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Aliases for NOTUM Gene

Aliases for NOTUM Gene

  • NOTUM, Palmitoleoyl-Protein Carboxylesterase 2 3 5
  • [Wnt Protein] O-Palmitoleoyl-L-Serine Hydrolase 2 3
  • HNOTUM 3 4
  • Notum Pectinacetylesterase Homolog (Drosophila) 2
  • Palmitoleoyl-Protein Carboxylesterase NOTUM 3
  • Notum Pectinacetylesterase Homolog 3
  • Protein Notum Homolog 3
  • EC 3.1.1.98 4

External Ids for NOTUM Gene

Previous GeneCards Identifiers for NOTUM Gene

  • GC17M077504
  • GC17M079910
  • GC17M075311

Summaries for NOTUM Gene

GeneCards Summary for NOTUM Gene

NOTUM (NOTUM, Palmitoleoyl-Protein Carboxylesterase) is a Protein Coding gene. Among its related pathways are CDK-mediated phosphorylation and removal of Cdc6 and Wnt Signaling Pathway and Pluripotency. GO annotations related to this gene include hydrolase activity and palmitoleyl hydrolase activity.

UniProtKB/Swiss-Prot for NOTUM Gene

  • Carboxylesterase that acts as a key negative regulator of the Wnt signaling pathway by specifically mediating depalmitoleylation of WNT proteins. Serine palmitoleylation of WNT proteins is required for efficient binding to frizzled receptors (PubMed:25731175).

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOTUM Gene

Genomics for NOTUM Gene

Regulatory Elements for NOTUM Gene

Enhancers for NOTUM Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G081990 1.9 FANTOM5 Ensembl ENCODE dbSUPER 3.2 -30.0 -30007 2.9 MLX ZFP64 ARID4B DMAP1 YY1 SLC30A9 ZNF143 PAF1 SP5 MXD4 ENSG00000262049 ASPSCR1 GPS1 CEP131 ENSG00000265678 ARL16 RFNG ENSG00000262877 SLC25A10 DCXR
GH17G081958 1.6 Ensembl ENCODE dbSUPER 0.7 +0.5 507 5.2 FOXA2 MLX ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF143 ZNF207 ZNF263 ENSG00000262049 ASPSCR1 HGS MYADML2 ENSG00000265678 OGFOD3 NARF-IT1 ARL2BPP9 ENSG00000262652 ENSG00000262663
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NOTUM on UCSC Golden Path with GeneCards custom track

Genomic Location for NOTUM Gene

Chromosome:
17
Start:
81,952,507 bp from pter
End:
81,961,840 bp from pter
Size:
9,334 bases
Orientation:
Minus strand

Genomic View for NOTUM Gene

Genes around NOTUM on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOTUM Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOTUM Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOTUM Gene

Proteins for NOTUM Gene

  • Protein details for NOTUM Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6P988-NOTUM_HUMAN
    Recommended name:
    Palmitoleoyl-protein carboxylesterase NOTUM
    Protein Accession:
    Q6P988
    Secondary Accessions:
    • Q8N410
    • Q8NI82

    Protein attributes for NOTUM Gene

    Size:
    496 amino acids
    Molecular mass:
    55699 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH36872.2; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=AAH60882.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB93501.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NOTUM Gene

neXtProt entry for NOTUM Gene

Post-translational modifications for NOTUM Gene

  • Glycosylation at Asn96
  • Modification sites at PhosphoSitePlus

Other Protein References for NOTUM Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for NOTUM Gene

Domains & Families for NOTUM Gene

Protein Domains for NOTUM Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NOTUM Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q6P988

UniProtKB/Swiss-Prot:

NOTUM_HUMAN :
  • Belongs to the pectinacetylesterase family. Notum subfamily.
Family:
  • Belongs to the pectinacetylesterase family. Notum subfamily.
genes like me logo Genes that share domains with NOTUM: view

No data available for Gene Families for NOTUM Gene

Function for NOTUM Gene

Molecular function for NOTUM Gene

UniProtKB/Swiss-Prot CatalyticActivity:
[Wnt]-O-(9Z)-hexadec-9-enoyl-L-serine + H(2)O = [Wnt]-L-serine + (9Z)-hexadec-9-enoate.
UniProtKB/Swiss-Prot Function:
Carboxylesterase that acts as a key negative regulator of the Wnt signaling pathway by specifically mediating depalmitoleylation of WNT proteins. Serine palmitoleylation of WNT proteins is required for efficient binding to frizzled receptors (PubMed:25731175).
UniProtKB/Swiss-Prot Induction:
Up-regulated in hepatocellular carcinoma (HCC) with high intracellular beta-catenin.

Enzyme Numbers (IUBMB) for NOTUM Gene

Gene Ontology (GO) - Molecular Function for NOTUM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004629 phospholipase C activity TAS --
GO:0016787 hydrolase activity IEA --
GO:0052689 carboxylic ester hydrolase activity IEA --
GO:1990699 palmitoleyl hydrolase activity IDA 25731175
genes like me logo Genes that share ontologies with NOTUM: view
genes like me logo Genes that share phenotypes with NOTUM: view

Animal Model Products

miRNA for NOTUM Gene

miRTarBase miRNAs that target NOTUM

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NOTUM Gene

Localization for NOTUM Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOTUM Gene

Secreted.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NOTUM gene
Compartment Confidence
extracellular 5
cytoskeleton 1
peroxisome 1
nucleus 1
endoplasmic reticulum 1
lysosome 1
golgi apparatus 1

Gene Ontology (GO) - Cellular Components for NOTUM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005788 endoplasmic reticulum lumen TAS --
genes like me logo Genes that share ontologies with NOTUM: view

Pathways & Interactions for NOTUM Gene

genes like me logo Genes that share pathways with NOTUM: view

Pathways by source for NOTUM Gene

Interacting Proteins for NOTUM Gene

Gene Ontology (GO) - Biological Process for NOTUM Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016055 Wnt signaling pathway IEA --
GO:0030178 negative regulation of Wnt signaling pathway IDA 25731175
GO:0043687 post-translational protein modification TAS --
GO:0044267 cellular protein metabolic process TAS --
GO:0090090 negative regulation of canonical Wnt signaling pathway IBA --
genes like me logo Genes that share ontologies with NOTUM: view

No data available for SIGNOR curated interactions for NOTUM Gene

Transcripts for NOTUM Gene

mRNA/cDNA for NOTUM Gene

Unigene Clusters for NOTUM Gene

Notum pectinacetylesterase homolog (Drosophila):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOTUM Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6 ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12
SP1: -
SP2: -
SP3: -

Relevant External Links for NOTUM Gene

GeneLoc Exon Structure for
NOTUM
ECgene alternative splicing isoforms for
NOTUM

Expression for NOTUM Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NOTUM Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NOTUM Gene

This gene is overexpressed in Liver (x10.6), Muscle - Skeletal (x5.8), and Testis (x4.4).

Protein differential expression in normal tissues from HIPED for NOTUM Gene

This gene is overexpressed in Placenta (68.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NOTUM Gene



Protein tissue co-expression partners for NOTUM Gene

NURSA nuclear receptor signaling pathways regulating expression of NOTUM Gene:

NOTUM

SOURCE GeneReport for Unigene cluster for NOTUM Gene:

Hs.106137

mRNA Expression by UniProt/SwissProt for NOTUM Gene:

Q6P988-NOTUM_HUMAN
Tissue specificity: Rarely expressed in adult normal tissues.

Evidence on tissue expression from TISSUES for NOTUM Gene

  • Pancreas(4.1)
  • Skin(2)
genes like me logo Genes that share expression patterns with NOTUM: view

Primer Products

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for NOTUM Gene

Orthologs for NOTUM Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NOTUM Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NOTUM 34 35
  • 97.32 (n)
cow
(Bos Taurus)
Mammalia NOTUM 34
  • 91.29 (n)
dog
(Canis familiaris)
Mammalia NOTUM 34 35
  • 90.34 (n)
rat
(Rattus norvegicus)
Mammalia Notum 34
  • 87.16 (n)
mouse
(Mus musculus)
Mammalia Notum 34 16 35
  • 86.9 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NOTUM 35
  • 85 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NOTUM 35
  • 69 (a)
OneToOne
chicken
(Gallus gallus)
Aves NOTUM 34 35
  • 79.19 (n)
lizard
(Anolis carolinensis)
Reptilia NOTUM 35
  • 84 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia notum 34
  • 72.73 (n)
zebrafish
(Danio rerio)
Actinopterygii notum1a 34 35
  • 74.15 (n)
NOTUM (3 of 3) 35
  • 67 (a)
OneToMany
notum2 35
  • 50 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Notum 34 35
  • 55.47 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G45280 34
  • 39.86 (n)
rice
(Oryza sativa)
Liliopsida Os04g0602500 34
  • 41.26 (n)
Species where no ortholog for NOTUM was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NOTUM Gene

ENSEMBL:
Gene Tree for NOTUM (if available)
TreeFam:
Gene Tree for NOTUM (if available)

Paralogs for NOTUM Gene

No data available for Paralogs for NOTUM Gene

Variants for NOTUM Gene

Sequence variations from dbSNP and Humsavar for NOTUM Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000216246 -- 81,955,292(+) ACCTC(C/T)ATTTT intron-variant
rs1000282395 -- 81,960,151(+) CGGCT(A/G)TCCTC intron-variant
rs1000356190 -- 81,955,024(+) CACCC(A/C)GGCTG intron-variant
rs1001514886 -- 81,959,670(+) GCTGC(C/T)CCTGG reference, missense
rs1001585565 -- 81,959,456(+) CCCCA(A/G)GGCCC intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOTUM Gene

Variant ID Type Subtype PubMed ID
esv21913 CNV gain+loss 19812545
esv29964 CNV loss 17803354
nsv1133416 CNV deletion 24896259
nsv428351 CNV gain 18775914
nsv470620 CNV loss 18288195
nsv828137 CNV loss 20364138
nsv833569 CNV loss 17160897
nsv833571 CNV loss 17160897
nsv952392 CNV deletion 24416366

Variation tolerance for NOTUM Gene

Residual Variation Intolerance Score: 69.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.17; 61.74% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOTUM Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOTUM

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NOTUM Gene

Disorders for NOTUM Gene

Relevant External Links for NOTUM

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOTUM

No disorders were found for NOTUM Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOTUM Gene

Publications for NOTUM Gene

  1. Notum deacylates Wnt proteins to suppress signalling activity. (PMID: 25731175) Kakugawa S. … Vincent J.P. (Nature 2015) 2 3 4 64
  2. Human homolog of NOTUM, overexpressed in hepatocellular carcinoma, is regulated transcriptionally by beta-catenin/TCF. (PMID: 18429952) Torisu Y. … Aburatani H. (Cancer Sci. 2008) 3 4 64
  3. Novel insights into Notum and glypicans regulation in colorectal cancer. (PMID: 26517809) De Robertis M. … Signori E. (Oncotarget 2015) 3 64
  4. A single kinase generates the majority of the secreted phosphoproteome. (PMID: 26091039) Tagliabracci V.S. … Dixon J.E. (Cell 2015) 4 64
  5. hORFeome v3.1: a resource of human open reading frames representing over 10,000 human genes. (PMID: 17207965) Lamesch P. … Vidal M. (Genomics 2007) 3 64

Products for NOTUM Gene

Sources for NOTUM Gene

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