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Aliases & Descriptions for NOTCH4
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| FLJ16302 2 | | INT3 2, 3, 5 | | MGC74442 2 | | NOTCH3 2 | | OTTHUMP00000062678 2 | | hNotch4 3 | | notch4 2 |
| | | Descriptions |
|---|
| Notch (Drosophila) homolog 4 1 | | Notch 4 3 | | Notch homolog 4 (Drosophila) 2 |
|
| | Search outside databases for aliases for NOTCH4 genePrevious GC identifers: GC06M032185 GC06M031933 GC06M032234 GC06M032231 |
Summaries for NOTCH4(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NOTCH4: This gene encodes a member of the Notch family. Members of this Type 1 transmembrane protein family share structural characteristics including an extracellular domain consisting of multiple epidermal growth factor-like (EGF) repeats, and an intracellular domain consisting of multiple, different domain types. Notch family members play a role in a variety of developmental processes by controlling cell fate decisions. The Notch signaling network is an evolutionarily conserved intercellular signaling pathway which regulates interactions between physically adjacent cells. In Drosophilia, notch interaction with its cell-bound ligands (delta, serrate) establishes an intercellular signaling pathway that plays a key role in development. Homologues of the notch-ligands have also been identified in human, but precise interactions between these ligands and the human notch homologues remain to be determined. This protein is cleaved in the trans-Golgi network, and presented on the cell surface as a heterodimer. This protein functions as a receptor for membrane bound ligands, and may play a role in vascular, renal and hepatic development. This gene may be associated with susceptibility to schizophrenia in a small portion of cases. An alternative splice variant has been described but its biological nature has not been determined. [provided by RefSeq] UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466Function: Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBP-J kappa and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May regulate branching morphogenesis in the developing vascular system (By similarity)Gene Wiki entry for NOTCH4 |
Genomic Location for NOTCH4
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NOTCH4 gene 
Entrez Gene cytogenetic band: 6p21.3 Ensembl cytogenetic band: 6p21.32 HGNC cytogenetic band: 6p21.3NOTCH4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M032270:
(about GC identifiers)
Start:
|
32,270,598 bp from pter |
End:
|
32,299,822 bp from pter |
Size:
|
29,225 bases |
Orientation:
|
minus strand |
2 alternative locations:
| Chr6-,c6_QBL 32,263,094-32,292,321 | Chr6-,c6_COX 32,258,348-32,287,570 |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14 NT_113891.1 NT_113896.1
| Proteins for NOTCH4
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466 (See
protein sequence)Recommended Name: Neurogenic locus notch homolog protein 4 precursor Size: 2003 amino acids; 209622 Da
Subunit: Heterodimer of a C-terminal fragment N(TM) and a N-terminal fragment N(EC) which are probably linked by disulfide bonds (By similarity). Interacts with MAML1, MAML2 and MAML3 which act as transcriptional coactivators for NOTCH4
Subcellular location: Cell membrane; Single-pass type I membrane protein
Subcellular location: Notch 4 intracellular domain: Nucleus. Note=Following proteolytical processing NICD is translocated to the nucleus
Sequence caution: Sequence=BAA09708.1; Type=Frameshift; Positions=1438, 1463;
Secondary accessions: B0V1X5 O00306 Q5SSY7 Q99458 Q99940 Q9H3S8 Q9UII9 Q9UIJ0Alternative splicing: 3 isoforms: Q99466-1 Q99466-2 Q99466-3 (Experimental confirmation may be lacking for some isoforms)Post-translational modifications:
Synthesized in the endoplasmic reticulum as an inactive form which is proteolytically cleaved by a furin-like convertase in the trans-Golgi network before it reaches the plasma membrane to yield an active, ligand-accessible form. Cleavage results in a C-terminal fragment N(TM) and a N-terminal fragment N(EC). Following ligand binding, it is cleaved by TNF-alpha converting enzyme (TACE) to yield a membrane-associated intermediate fragment called notch extracellular truncation (NEXT). This fragment is then cleaved by presenilin dependent gamma-secretase to release a notch-derived peptide containing the intracellular domain (NICD) from the membrane (By similarity)1
Phosphorylated (By similarity)1
REFSEQ proteins: NP_004548.3
ENSEMBL proteins: ENSP00000364163
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
5/6 Gene Ontology (GO) cellular component terms (links to tree view) (see all 6
): About this table
Antibodies for NOTCH4: Assays for NOTCH4: | Protein
Domains/ Families for NOTCH4(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q99466
ProtoNet protein and cluster: Q99466 4 Blocks protein families: IPB000152 Aspartic acid and asparagine hydroxylation site IPB000800 LIN-12/notch repeat (LNR) signature IPB001881 EGF-like calcium-binding IPB002110 Ankyrin repeat signature
UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466Similarity: Belongs to the NOTCH familySimilarity: Contains 5 ANK repeatsSimilarity: Contains 28 EGF-like domainsSimilarity: Contains 3 LNR (Lin/Notch) repeats | Gene Function for NOTCH4
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004557
Applied Biosystems Silencer® siRNAs for NOTCH4
Sigma-Aldrich siRNA and siRNA Panels for NOTCH4  Sigma-Aldrich shRNA for NOTCH4  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004557                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004557                                  untagged cDNA clone in CMV expression vector: NM_004557 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004557
UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466Function: Functions as a receptor for membrane-bound ligands Jagged1, Jagged2 and Delta1 to regulate cell-fate determination. Upon ligand activation through the released notch intracellular domain (NICD) it forms a transcriptional activator complex with RBP-J kappa and activates genes of the enhancer of split locus. Affects the implementation of differentiation, proliferation and apoptotic programs. May regulate branching morphogenesis in the developing vascular system (By similarity)Genatlas biochemistry entry for NOTCH4:Drosophila Notch homolog 4,mediating cell-cell interactions that specify cell fate during development,undergoing a first proteolytic cleavage by furin (PACE1) in the Golgi during trafficking of Notch to the cell surface,undergoing further cleavage by gamma secretase (see PSEN1) releasing an intracellular domain (NICD) which translocates to the nucleus and modulates transcription of target genes,homologous to MMTV integration site int-3,containing a (CTG)n repeats polymorphism,with 2 isoforms L and S6 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Notch4):
4 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for NOTCH4
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
1 Sigma-Aldrich "Your Favorite Gene" Pathway for NOTCH4 (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for NOTCH4 
5/22 Interacting proteins for NOTCH4 (ENSP000003641633) via UniProtKB, MINT, and/or STRING (see all 22
)About this table
5/16 Gene Ontology (GO) biological process terms (links to tree view) (see all 16
): About this table
|
Drugs & Compounds for NOTCH4(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  | Sigma-Aldrich Small Molecules for NOTCH4: Inhibitor |
Browse Tocris compounds for NOTCH4 1 Novoseek chemical compound relationship for NOTCH4 gene
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| snp 2 |
76.81 |
3 |
11239712 (2), 15653273 (1) |
About this table
|
Transcripts for NOTCH4(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004557
Sigma-Aldrich siRNA and siRNA Panels for NOTCH4  Sigma-Aldrich shRNA for NOTCH4  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004557 REFSEQ mRNAs for NOTCH4 gene: NM_004557.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004557               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004557                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004557                                  untagged cDNA clone in CMV expression vector: NM_004557  Additional cDNA sequence: AK131314.1 AK290785.1 AK293692.1 AK294161.1 BC033869.1 BC063815.1 BC140782.1 BC144540.1 BC144541.1 D63395.1 U95299.1 6 DOTS entries: DT.443558 DT.97785448 DT.40281802 DT.121378239 DT.99962397 DT.91906043 24/222 AceView cDNA sequences (see all 222
):AK131314 BU149977 AI244789 BG743359 AJ243938 CR623296 BU163550 BP368231 BQ183096 BU580994 BX089524 BQ023076 AA868548 CA307082 BM705319 CK821917 CD672916 BC018724 BM707893 BU172121 BQ057520 BQ933211 BU617696 CR604341
highest scoring ESTs for NOTCH4:U95299 AL705835 AL705928 BU146559 CB960724 BF957194 BF994400 BP211398 DA043727 DA441071 Unigene Cluster for NOTCH4: Notch homolog 4 (Drosophila) Hs.436100 [show with all ESTs]Unigene Representative Sequence: NM_004557
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000375023
|
Expression for NOTCH4
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NOTCH4 expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NOTCH4
1 / 2 / 3 6 probe-sets matching NOTCH4 gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GTAGGGAGGA
SOURCE GeneReport for Unigene cluster: Hs.436100
Expression variation in blood from EXPOLDB for NOTCH4 UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466Tissue specificity: Highly expressed in the heart, moderately in the lung and placenta and at low levels in the liver, skeletal muscle, kidney, pancreas, spleen, lymph node, thymus, bone marrow and fetal liver. No expression was seen in adult brain or peripheral blood leukocytes |
Orthologs for NOTCH4
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NOTCH4 gene from 5/7 species (see all 7
)
About this table Species with no ortholog for NOTCH4
ENSEMBL Gene Tree for NOTCH4 | Paralogs for NOTCH4(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for NOTCH4 gene
- CRB22 CRB12
|
SNPs/Variants for NOTCH4(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
| UniProtKB/Swiss-Prot: NOTC4_HUMAN, Q99466Polymorphism: The poly-Leu region of NOTCH4 (in the signal peptide) is polymorphic and the number of Leu varies in the population (from 6 to 12)
HapMap Linkage Disequilibrium images for NOTCH4 (up to first 250kb)
|
Disorders & Mutations for NOTCH4
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 164951
10/13 Novoseek disease relationships for NOTCH4 gene (see all 13
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| schizophrenia |
56.74 |
83 |
12873802 (6), 12627456 (5), 16894623 (5), 11407996 (5) (see all 26) |
| mammary tumor |
41.75 |
3 |
9243759 (1), 15288259 (1) |
| schizoaffective disorder |
27.81 |
4 |
11239712 (4) |
| hepatocellular carcinoma |
19.97 |
8 |
16951162 (2), 17696940 (1), 17920003 (1), 19304334 (1) |
| ovarian cancer |
14.61 |
11 |
18974129 (2), 18632624 (2), 16778208 (1) |
| breast cancer |
12.86 |
5 |
17158237 (2), 18339869 (2) |
| tumors |
11.62 |
30 |
18339869 (3), 9243759 (3), 16778208 (3), 17675579 (2) (see all 14) |
| cancer |
3.30 |
6 |
18184405 (2), 17158237 (1), 15867348 (1), 17804716 (1) |
| carcinoma |
0.00 |
2 |
18632624 (1), 17948123 (1) |
| alzheimers disease |
0.00 |
3 |
14966150 (2), 17452726 (1) |
About this table
Human Gene Mutation Database: NOTCH4 Genetic Association Database: NOTCH4 Human Genome Epidemiology Navigator: NOTCH4 (28 documents) Tumor Gene Database: NOTCH4
|
Medical News for NOTCH4(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NOTCH4 (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/145 PubMed articles for NOTCH4 gene (see all 145
):- Gene organization of human NOTCH4 and (CTG)n polymorphism in this human counterpart gene of mouse proto-oncogene Int3. (PubMed id 9168133)1, 3, 4 Sugaya K.... Mita K. (1997)
- Family-based association study of the NOTCH4 gene in schizophrenia using Japanese and Chinese samples. (PubMed id 12873802)1, 3, 6 Takahashi S....Tsuang M.T. (2003)
- NOTCH4 gene polymorphism and susceptibility to schizophrenia and schizoaffective disorder. (PubMed id 11239712)1, 3, 6 Ujike H....Kuroda S. (2001)
- A NOTCH4 association with multiple sclerosis is secondary to HLA-DR*1501. (PubMed id 14651518)1, 3, 6 Duvefelt K....Hillert J. (2004)
- NOTCH4 gene haplotype is associated with schizophrenia in African Americans. (PubMed id 14732589)1, 3, 6 Luo X....Gelernter J. (2004)
- NOTCH4 and the frontal lobe in schizophrenia. (PubMed id 12627456)1, 3, 6 Wassink T.H....Andreasen N.C. (2003)
- Two NOTCH4 polymorphisms and their relation to schizophrenia susceptibility and different personality traits. (PubMed id 12605097)1, 3, 6 Carmine A....Olson L. (2003)
- The (CTG)n polymorphism in the NOTCH4 gene is not associated with schizophrenia in Japanese individuals. (PubMed id 11407996)1, 3, 6 Imai K....Suzuki T. (2001)
- Five NOTCH4 polymorphisms show weak evidence for association with schizophrenia: evidence from meta-analyses. (PubMed id 15653273)1, 3, 6 Glatt S.J....Faraone S.V. (2005)
- [Association study of NOTCH4 gene polymorphisms with schizophrenia and mood disorders in mixed pedigrees] (PubMed id 16378929)1, 3, 6 Wang Z.W....Jing S.D. (2005)
|
Search for NOTCH4
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NOTCH4
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NOTCH4
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NOTCH4(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NOTCH4(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NOTCH4:

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Incremental update: 13 Oct 2009
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