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Aliases for NOTCH2NL Gene

Aliases for NOTCH2NL Gene

  • Notch 2 N-Terminal Like 2 3
  • N2N 3 4
  • Notch Homolog 2 (Drosophila) N-Terminal Like 2
  • Notch Homolog 2 N-Terminal Like Protein 3
  • Notch Homolog 2 N-Terminal-Like Protein 3

External Ids for NOTCH2NL Gene

Summaries for NOTCH2NL Gene

GeneCards Summary for NOTCH2NL Gene

NOTCH2NL (Notch 2 N-Terminal Like) is a Protein Coding gene. Diseases associated with NOTCH2NL include hajdu-cheney syndrome. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is LOC100996763.

UniProtKB/Swiss-Prot for NOTCH2NL Gene

  • May function in the Notch signaling pathway and regulate neutrophil differentiation.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOTCH2NL Gene

Genomics for NOTCH2NL Gene

Genomic Location for NOTCH2NL Gene

Start:
146,146,203 bp from pter
End:
146,229,032 bp from pter
Size:
82,830 bases
Orientation:
Minus strand

Genomic View for NOTCH2NL Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NOTCH2NL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOTCH2NL Gene

Regulatory Elements for NOTCH2NL Gene

Proteins for NOTCH2NL Gene

  • Protein details for NOTCH2NL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z3S9-NT2NL_HUMAN
    Recommended name:
    Notch homolog 2 N-terminal-like protein
    Protein Accession:
    Q7Z3S9
    Secondary Accessions:
    • Q5BKT8
    • Q5VTG9
    • Q5XG84
    • Q6P192
    • Q8NC23
    • Q8WUQ9
    • Q96FY1

    Protein attributes for NOTCH2NL Gene

    Size:
    236 amino acids
    Molecular mass:
    25835 Da
    Quaternary structure:
    • Interacts with ELANE.
    SequenceCaution:
    • Sequence=AAH84572.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC11381.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for NOTCH2NL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NOTCH2NL Gene

Proteomics data for NOTCH2NL Gene at MOPED

Post-translational modifications for NOTCH2NL Gene

Other Protein References for NOTCH2NL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NOTCH2NL Gene

Domains for NOTCH2NL Gene

UniProtKB/Swiss-Prot:

NT2NL_HUMAN
Domain:
  • Contains 6 EGF-like domains.:
    • Q7Z3S9
Family:
  • Belongs to the NOTCH family.:
    • Q7Z3S9
genes like me logo Genes that share domains with NOTCH2NL: view

No data available for Gene Families for NOTCH2NL Gene

Function for NOTCH2NL Gene

Molecular function for NOTCH2NL Gene

UniProtKB/Swiss-Prot Function: May function in the Notch signaling pathway and regulate neutrophil differentiation.

Gene Ontology (GO) - Molecular Function for NOTCH2NL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with NOTCH2NL: view

miRNA for NOTCH2NL Gene

miRTarBase miRNAs that target NOTCH2NL

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for NOTCH2NL Gene

Localization for NOTCH2NL Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOTCH2NL Gene

Secreted. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NOTCH2NL Gene COMPARTMENTS Subcellular localization image for NOTCH2NL gene
Compartment Confidence
extracellular 5
cytosol 2
nucleus 2
cytoskeleton 1
plasma membrane 1

Gene Ontology (GO) - Cellular Components for NOTCH2NL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region IEA --
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with NOTCH2NL: view

Pathways for NOTCH2NL Gene

SuperPathways for NOTCH2NL Gene

No Data Available

Gene Ontology (GO) - Biological Process for NOTCH2NL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007219 Notch signaling pathway IEA --
GO:0007275 multicellular organismal development IEA --
GO:0030154 cell differentiation IEA --
genes like me logo Genes that share ontologies with NOTCH2NL: view

No data available for Pathways by source for NOTCH2NL Gene

Transcripts for NOTCH2NL Gene

mRNA/cDNA for NOTCH2NL Gene

Unigene Clusters for NOTCH2NL Gene

Notch 2 N-terminal like:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NOTCH2NL Gene

No ASD Table

Relevant External Links for NOTCH2NL Gene

GeneLoc Exon Structure for
NOTCH2NL
ECgene alternative splicing isoforms for
NOTCH2NL

Expression for NOTCH2NL Gene

mRNA expression in normal human tissues for NOTCH2NL Gene

SOURCE GeneReport for Unigene cluster for NOTCH2NL Gene Hs.655156

mRNA Expression by UniProt/SwissProt for NOTCH2NL Gene

Q7Z3S9-NT2NL_HUMAN
Tissue specificity: Widely expressed with higher levels in leukocytes and lymph nodes.
genes like me logo Genes that share expressions with NOTCH2NL: view

Orthologs for NOTCH2NL Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NOTCH2NL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NOTCH2NL 36
  • 95.72 (n)
  • 93.58 (a)
Species with no ortholog for NOTCH2NL:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NOTCH2NL Gene

ENSEMBL:
Gene Tree for NOTCH2NL (if available)
TreeFam:
Gene Tree for NOTCH2NL (if available)

Paralogs for NOTCH2NL Gene

Paralogs for NOTCH2NL Gene

Selected SIMAP similar genes for NOTCH2NL Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NOTCH2NL: view

Variants for NOTCH2NL Gene

Sequence variations from dbSNP and Humsavar for NOTCH2NL Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs8002 - 146,156,641(-) TGGCA(C/T)CTGCC reference, missense
rs327188 -- 146,159,692(-) ACACC(C/G)GGCCG intron-variant
rs856488 -- 146,161,636(+) tgcca(C/T)cagaa intron-variant
rs856487 -- 146,161,580(+) tcccg(C/T)aacat intron-variant
rs856486 -- 146,161,188(+) atccg(C/T)ggact intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOTCH2NL Gene

Variant ID Type Subtype PubMed ID
nsv428212 CNV Gain 18775914
nsv872203 CNV Gain 21882294
dgv104e1 CNV Complex 17122850
nsv7181 OTHER Inversion 18451855
nsv436028 CNV Insertion 17901297
esv2717206 CNV Deletion 23290073
dgv66e199 CNV Deletion 23128226
dgv15n16 CNV Deletion 17901297
dgv46e201 CNV Deletion 23290073
nsv510962 CNV Complex 20534489
nsv509457 CNV Insertion 20534489
dgv105e1 CNV Complex 17122850
dgv107e1 CNV Complex 17122850
dgv108e1 CNV Complex 17122850
nsv872222 CNV Gain 21882294
dgv111e1 CNV Complex 17122850
essv18481 CNV CNV 17122850
nsv2655 CNV Loss 18451855
nsv469755 CNV Loss 16826518
esv27127 CNV Gain 19812545
nsv824442 CNV Gain 20364138
nsv8091 CNV Gain 18304495
nsv831337 CNV Loss 17160897
nsv820512 CNV Duplication 20802225
nsv831348 CNV Loss 17160897
esv269263 CNV Insertion 20981092
nsv824453 CNV Gain 20364138
esv2422428 CNV Duplication 17116639
nsv2677 CNV Loss 18451855
esv2717385 CNV Deletion 23290073
nsv508582 CNV Loss 20534489

Relevant External Links for NOTCH2NL Gene

HapMap Linkage Disequilibrium report
NOTCH2NL

Disorders for NOTCH2NL Gene

(1) MalaCards Diseases for NOTCH2NL Gene

Search for NOTCH2NL Gene in MalaCards »

(3) University of Copenhagen DISEASES for NOTCH2NL Gene

genes like me logo Genes that share disorders with NOTCH2NL: view

No data available for UniProtKB/Swiss-Prot for NOTCH2NL Gene

Publications for NOTCH2NL Gene

  1. A novel notch protein, N2N, targeted by neutrophil elastase and implicated in hereditary neutropenia. (PMID: 14673143) Duan Z. … Horwitz M. (Mol. Cell. Biol. 2004) 2 3 4
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  3. Signal sequence and keyword trap in silico for selection of full- length human cDNAs encoding secretion or membrane proteins from oligo- capped cDNA libraries. (PMID: 16303743) Otsuki T. … Isogai T. (DNA Res. 2005) 3
  4. Transcriptome analysis of human gastric cancer. (PMID: 16341674) Oh J.H. … Kim N.S. (Mamm. Genome 2005) 3
  5. A protein-protein interaction network for human inherited ataxias and disorders of Purkinje cell degeneration. (PMID: 16713569) Lim J. … Zoghbi H.Y. (Cell 2006) 3

Products for NOTCH2NL Gene

Sources for NOTCH2NL Gene

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