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NOP9 Gene

protein-coding   GIFtS: 39
GCID: GC14P024770

NOP9 Nucleolar Protein

(Previous names: chromosome 14 open reading frame 21, NOP9 nucleolar protein...)
(Previous symbol: C14orf21)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
NOP9 Nucleolar Protein1 2     NOP9 Nucleolar Protein Homolog2
C14orf211 2 3     Nucleolar Protein 92
Chromosome 14 Open Reading Frame 211     Pumilio Domain-Containing Protein C14orf212
NOP9 Nucleolar Protein Homolog (Yeast)1     KIAA20213

External Ids:    HGNC: 198261   Entrez Gene: 1614242   Ensembl: ENSG000001969437   UniProtKB: Q86U383   

Export aliases for NOP9 gene to outside databases


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NOP9 Gene:
NOP9 (NOP9 nucleolar protein) is a protein-coding gene. GO annotations related to this gene include RNA binding.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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Regulatory elements:
   Search for regulatory transcription factor binding sites for NOP9
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search Chromatin IP Primers for NOP9

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NOP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q12   Ensembl cytogenetic band:  14q12   HGNC cytogenetic band: 14q12

NOP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NOP9 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P024770:  view genomic region     (about GC identifiers)

Start:
24,769,068 bp from pter      End:
24,778,330 bp from pter
Size:
9,263 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., and/or eBioscience,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., and/or eBioscience, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: NOP9_HUMAN, Q86U38 (See protein sequence)
Recommended Name: Nucleolar protein 9  
Size: 636 amino acids; 69438 Da
Sequence caution: Sequence=BAC23117.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: Q8IVF0 Q8TBS6

Explore the universe of human proteins at neXtProt for NOP9: NX_Q86U38

Explore proteomics data for NOP9 at MOPED

Post-translational modifications: 

  • Ubiquitination2 at Lys120, Lys611
  • Modification sites at PhosphoSitePlus

  • See NOP9 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

    REFSEQ proteins (2 alternative transcripts): 
    NP_001273296.1  NP_777573.1  

    ENSEMBL proteins: 
     ENSP00000267425   ENSP00000380020   ENSP00000451905  

    NOP9 Human Recombinant Protein Products:

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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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    3 InterPro protein domains:
     IPR001313 Pumilio_RNA-bd_rpt
     IPR011989 ARM-like
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q86U38

    ProtoNet protein and cluster: Q86U38

    UniProtKB/Swiss-Prot: NOP9_HUMAN, Q86U38
    Similarity: Belongs to the NOP9 family
    Similarity: Contains 6 pumilio repeats


    Find genes that share domains with NOP9           About GenesLikeMe


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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         Gene Ontology (GO): 4 molecular function terms:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003723RNA binding ----
    GO:0005488binding ----
    GO:0044822poly(A) RNA binding IDA--
         
    Find genes that share ontologies with NOP9           About GenesLikeMe


    Phenotypes:
         3 GenomeRNAi human phenotypes for NOP9:
     Increased cell number in G1, a  Nuclear 60S biogenesis defects  Nucleolar pre-40S maturation d 

    Animal Models:
       inGenious Targeting Laboratory: Let us create your new Knockout/Knockin mouse model for NOP9
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    hsa-mir-744-5p (MIRT037715)

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    (According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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    Gene Ontology (GO): 1 cellular component term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    Find genes that share ontologies with NOP9           About GenesLikeMe


    (SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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        Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NOP9
    Interactions:

        Search GeneGlobe Interaction Network for NOP9

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    Selected Interacting proteins for NOP9 (ENSP000002674254) via UniProtKB, MINT, STRING, and/or I2D (see all 117)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NIFKENSP000002858144STRING: ENSP00000285814
    NOP58ENSP000002642794STRING: ENSP00000264279
    PDCD11ENSP000003588124STRING: ENSP00000358812
    NOP56ENSP000003705894STRING: ENSP00000370589
    CIRH1AENSP000003271794STRING: ENSP00000327179
    About this table

    Gene Ontology (GO): 1 biological process term:    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    Find genes that share ontologies with NOP9           About GenesLikeMe



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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    Browse Small Molecules at EMD Millipore
       Browse drugs & compounds from Enzo Life Sciences
      Browse compounds at ApexBio 

    Browse Tocris compounds for NOP9



    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
    Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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    REFSEQ mRNAs for NOP9 gene (2 alternative transcripts): 
    NM_001286367.1  NM_174913.2  

    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000267425(uc001wol.1 uc001wom.1) ENST00000396802 ENST00000557362

    miRNA
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      QuantiTect SYBR Green Assays in human, mouse, rat NOP9
      QuantiFast Probe-based Assays in human, mouse, rat NOP9

    Selected AceView cDNA sequences (see all 247):

    BM975595 AI369257 BT007267 AW140048 CR593232 NM_019839 CR590406 BG752524 
    AB029892 BG678198 NM_181657 BE676698 CR619293 BQ049406 BM786156 BC038437 
    AA009760 AI459319 AA258472 BQ182452 CA775286 BG911571 AI493839 BX248018 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: --

    NOP9 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

    NOP9 Protein Expression
        Custom PCR Arrays for NOP9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOP9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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    This gene was present in the common ancestor of eukaryotes.

    Orthologs for NOP9 gene from Selected species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nop91 , 5 RIKEN cDNA 2610027L16 gene5
    NOP9 nucleolar protein1
    83.02(n)1
    82.08(a)1
      14 (28.19 cM)5
    678421  NM_026403.31  NP_080679.31 
     557456935 
    chicken
    (Gallus gallus)
    Aves LOC1017501181 nucleolar protein 9-like 51.39(n)
    42.19(a)
      101750118  XM_004950779.1  XP_004950836.1 
    lizard
    (Anolis carolinensis)
    Reptilia NOP96
    NOP9 nucleolar protein
    39(a)
    1 ↔ 1
    GL343400.1(235336-256216)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC691562 hypothetical protein MGC69156 72.6(n)    BC059344.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003325771 nucleolar protein 9-like 49.28(n)
    37.05(a)
      100332577  XM_002662078.2  XP_002662124.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG111231 CG11123 42.71(n)
    32.16(a)
      35664  NM_136432.2  NP_610276.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes NOP9(YJL010C)4
    NOP91
    Essential subunit of U3-containing 90S preribosome more4
    NOP91
    38.05(n)1
    24.15(a)1
      10(419562-417562)4
    8534451, 4  NP_012524.31  NP_012524.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons PUM231 PUM23 39.14(n)
    26.52(a)
      843564  NM_105891.2  NP_177376.1 
    rice
    (Oryza sativa)
    Liliopsida Os10g03901001 Os10g0390100 39.88(n)
    28.52(a)
      4348523  NM_001071038.1  NP_001064503.1 


    ENSEMBL Gene Tree for NOP9 (if available)
    TreeFam Gene Tree for NOP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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    Paralogs for NOP9 gene
    1 SIMAP similar gene for NOP9 using alignment to 3 protein entries:     NOP9_HUMAN (see all proteins):
    DKFZp686E1893

    Find genes that share paralogs with NOP9           About GenesLikeMe



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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    Selected SNPs for NOP9 (see all 138)    About this table                                 

    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0364574
    A breast cancer sample4--see VAR_0364572 R Q mis40--------
    VAR_0364564
    A breast cancer sample4--see VAR_0364562 S Y mis40--------
    rs1120934511,2
    F--24771046(+) TTGACG/ATTCAG 1 -- int13Minor allele frequency- A:0.06CSA WA 122
    rs735896971,2
    C,F--24771048(+) GACGTT/CCAGAG 1 -- int13Minor allele frequency- C:0.05WA CSA 122
    rs796805811,2
    F--24771051(+) GTTCAG/AAGCAC 1 -- int12Minor allele frequency- A:0.05CSA WA 120
    rs1142163651,2
    F--24771079(+) TGTCCA/GTAGTG 1 -- int11Minor allele frequency- G:0.01WA 118
    rs43740851,2
    C,F,A,H--24771080(+) GTCCAT/CAGTGC 1 -- int120Minor allele frequency- C:0.15NS EA NA WA CSA 2180
    rs43666411,2
    C,F,A,H--24771101(+) GTTGCC/TTAAAG 1 -- int119Minor allele frequency- T:0.14NS EA NA WA EU 2789
    rs42470001,2
    C,F,H--24771137(+) TTTTGA/GGAAAG 1 -- int128Minor allele frequency- G:0.08NS EA NA WA CSA EU 3784
    rs586722061,2
    C--24771142(+) GGAAAG/TCCGCT 1 -- int12Minor allele frequency- T:0.05CSA WA 120

    HapMap Linkage Disequilibrium report for NOP9 (24769068 - 24778330 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for NOP9: --
    Site Specific Mutation Identification with PCR Assays
    SeqTarget long-range PCR primers for resequencing NOP9
    DNA2.0 Custom Variant and Variant Library Synthesis for NOP9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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    PubMed articles for NOP9 gene, integrated from 10 sources (see all 18):
    (articles sorted by number of sources associating them with NOP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Specific and modular binding code for cytosine recognition in Pumilio/FBF (PUF) RNA-binding domains. (PubMed id 21653694)1, 3 Dong S....Wang Z. (J. Biol. Chem. 2011)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
    3. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (Nature 2003)
    4. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (Sci Signal 2012)
    5. Host cell interactome of HIV-1 Rev includes RNA helicases involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (amp 2012)
    6. Methods for quantification of in vivo changes in protein ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (amp 2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (BMC Syst. Biol. 2011)
    8. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (Sci. Signal. 2011)
    9. Mass spectrometric analysis of lysine ubiquitylation reveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (amp 2011)
    10. Global identification of modular cullin-RING ligase substrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (Cell 2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
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     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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    Entrez Gene: 161424 HGNC: 19826 AceView: LTB4R2andC14orf21andLTB4R Ensembl:ENSG00000196943 euGenes: HUgn161424
    ECgene: NOP9 H-InvDB: NOP9

    (According to HUGE)
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    HUGE: KIAA2021

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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    NameDescription
    PharmGKB entry for NOP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
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    Patent Information for NOP9 gene:
    Search GeneIP for patents involving NOP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, eBioscience, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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     Search Addgene for plasmids for NOP9
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    GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014

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