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Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NOP9 Gene

protein-coding   GIFtS: 36
GCID: GC14P024770

NOP9 Nucleolar Protein

(Previous names: chromosome 14 open reading frame 21, NOP9 nucleolar protein...)
(Previous symbol: C14orf21)
  Search for NOP9
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
About This Section

Aliases
NOP9 Nucleolar Protein1 2     NOP9 Nucleolar Protein Homolog2
C14orf211 2 3     Nucleolar Protein 92
Chromosome 14 Open Reading Frame 211     Pumilio Domain-Containing Protein C14orf212
NOP9 Nucleolar Protein Homolog (Yeast)1     KIAA20213

External Ids:    HGNC: 198261   Entrez Gene: 1614242   Ensembl: ENSG000001969437   UniProtKB: Q86U383   

Export aliases for NOP9 gene to outside databases


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

GeneCards Summary for NOP9 Gene: 
NOP9 (NOP9 nucleolar protein) is a protein-coding gene. GO annotations related to this gene include RNA binding and molecular_function.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 73), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
Regulatory elements:
   Search SABiosciences Regulatory transcription factor binding sites for NOP9
         Other transcription factors

Browse SwitchGear Promoter luciferase reporter plasmids
   Search SABiosciences Chromatin IP Primers for NOP9

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NOP9


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 14q12   Ensembl cytogenetic band:  14q12   HGNC cytogenetic band: 14q12

NOP9 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NOP9 gene location

GeneLoc information about chromosome 14         GeneLoc Exon Structure

GeneLoc location for GC14P024770:  view genomic region     (about GC identifiers)

Start:
24,769,068 bp from pter      End:
24,778,330 bp from pter
Size:
9,263 bases      Orientation:
plus strand

(According to UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MAXQB RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Ontologies according to Gene Ontology Consortium 01 Oct 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
About This Section

UniProtKB/Swiss-Prot: NOP9_HUMAN, Q86U38 (See protein sequence)
Recommended Name: Nucleolar protein 9  
Size: 636 amino acids; 69438 Da
Sequence caution: Sequence=BAC23117.1; Type=Erroneous initiation; Note=Translation N-terminally shortened;
Secondary accessions: Q8IVF0 Q8TBS6

Explore the universe of human proteins at neXtProt for NOP9: NX_Q86U38

Explore proteomics data for NOP9 at MOPED 

Post-translational modifications:

  • View modification sites using PhosphoSitePlus
  • View neXtProt modification sites for NX_Q86U38

  • NOP9 Protein expression data from MOPED1, PaxDb2 and MAXQB3 :    About this image 

    NOP9 Protein Expression
    REFSEQ proteins: NP_777573.1  
    ENSEMBL proteins: 
     ENSP00000267425   ENSP00000380020   ENSP00000451905  

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    Gene Ontology (GO): 1 cellular component term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005575cellular_component ND--

    NOP9 for ontologies           About GeneDecksing



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    (According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section
    3 InterPro protein domains:
     IPR011989 ARM-like
     IPR001313 Pumilio_RNA-bd_rpt
     IPR016024 ARM-type_fold

    Graphical View of Domain Structure for InterPro Entry Q86U38

    ProtoNet protein and cluster: Q86U38

    UniProtKB/Swiss-Prot: NOP9_HUMAN, Q86U38
    Similarity: Belongs to the NOP9 family
    Similarity: Contains 6 pumilio repeats


    NOP9 for domains           About GeneDecksing


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase, shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Sirion Biotech, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, Vector BioLabs, and Sirion Biotech, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene.)
    About This Section

         Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003674molecular_function ND--
    GO:0003723RNA binding IEA--
    GO:0005488binding ----
         
    NOP9 for ontologies           About GeneDecksing


    Phenotypes:
         3 GenomeRNAi human phenotypes for NOP9:
     Increased cell number in G1, a  Nuclear 60S biogenesis defects  Nucleolar pre-40S maturation d 

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    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Oct 2013 via Entrez Gene).
    About This Section



    Interactions:

        Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NOP9

    Gene Ontology (GO): 1 biological process term (GO ID links to tree view):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0008150biological_process ND--

    NOP9 for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section
    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for NOP9

    Search CenterWatch for drugs/clinical trials and news about NOP9

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
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    About This Section

    REFSEQ mRNAs for NOP9 gene: 
    NM_174913.1  

    3 Ensembl transcripts including schematic representations, and UCSC links where relevant:
    ENST00000267425(uc001wol.1 uc001wom.1) ENST00000396802 ENST00000557362

    miRNA
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    24/247 AceView cDNA sequences (see all 247):

    CR590406 AB044402 AI828498 NM_181657 BE676698 NM_174913 BU146237 BQ049406 
    AI572517 AW140048 BM975595 BM786156 BX248018 AF277230 AB095941 BC038437 
    BF512397 CR618079 AI223801 BG752524 BX099451 NM_019839 BT007267 CB241246 

    GeneLoc Exon Structure


    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section
    See probesets specificity/sensitivity at GeneAnnot
    CGAP TAG: --


    See NOP9 Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for NOP9
        SABiosciences Custom PCR Arrays for NOP9
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    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOP9

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of eukaryotes.

    Orthologs for NOP9 gene from 9/20 species (see all 20)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    mouse
    (Mus musculus)
    Mammalia Nop91 , 5 RIKEN cDNA 2610027L16 gene5
    NOP9 nucleolar protein1
    83.02(n)1
    82.08(a)1
      14 (28.19 cM)5
    678421  NM_026403.31  NP_080679.31 
     557456935 
    chicken
    (Gallus gallus)
    Aves NOP96
    NOP9 nucleolar protein
    37(a)
    1 ↔ 1
    AADN03015797.1(332-1819)
    lizard
    (Anolis carolinensis)
    Reptilia NOP96
    Uncharacterized protein
    37(a)
    1 ↔ 1
    GL343400.1(235336-256216)
    African clawed frog
    (Xenopus laevis)
    Amphibia MGC691562 hypothetical protein MGC69156 72.6(n)    BC059344.1 
    zebrafish
    (Danio rerio)
    Actinopterygii LOC1003325771 pumilio domain-containing protein C14orf21-like 48.73(n)
    36.33(a)
      100332577  XM_002662078.1  XP_002662124.1 
    fruit fly
    (Drosophila melanogaster)
    Insecta CG111231 CG11123 42.46(n)
    30.42(a)
      35664  NM_136432.1  NP_610276.1 
    baker's yeast
    (Saccharomyces cerevisiae)
    Saccharomycetes NOP9(YJL010C)4
    NOP91
    Essential subunit of U3-containing 90S preribosome more4
    Nop9p1
    38.81(n)1
    25.05(a)1
      10(419562-417562)4
    8534451, 4  NP_012524.31  NP_012524.14 
    thale cress
    (Arabidopsis thaliana)
    eudicotyledons PUM231 pumilio 23 37.94(n)
    25.91(a)
      843564  NM_105891.2  NP_177376.1 
    rice
    (Oryza sativa)
    Liliopsida Os10g03901001 hypothetical protein 38.55(n)
    26.61(a)
      4348523  NM_001071038.1  NP_001064503.1 


    ENSEMBL Gene Tree for NOP9 (if available)
    TreeFam Gene Tree for NOP9 (if available)

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for NOP9 gene
    1 SIMAP similar gene for NOP9 using alignment to 3 protein entries:     NOP9_HUMAN (see all proteins):
    DKFZp686E1893

    NOP9 for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/138 SNPs in NOP9 are shown (see all 138)    About this table     
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 14 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    VAR_0364574
    A breast cancer sample4--see VAR_0364572 R Q mis40--------
    VAR_0364564
    A breast cancer sample4--see VAR_0364562 S Y mis40--------
    VAR_0516124
    ----see VAR_0516122 P S mis40--------
    rs1120934511,2
    F--24771046(+) TTGACG/ATTCAG 1 -- int13Minor allele frequency- A:0.06CSA WA 122
    rs735896971,2
    C,F--24771048(+) GACGTT/CCAGAG 1 -- int13Minor allele frequency- C:0.05WA CSA 122
    rs796805811,2
    F--24771051(+) GTTCAG/AAGCAC 1 -- int12Minor allele frequency- A:0.05CSA WA 120
    rs1142163651,2
    F--24771079(+) TGTCCA/GTAGTG 1 -- int11Minor allele frequency- G:0.01WA 118
    rs43740851,2
    C,F,A,H--24771080(+) GTCCAT/CAGTGC 1 -- int120Minor allele frequency- C:0.15NS EA NA WA CSA 2180
    rs43666411,2
    C,F,A,H--24771101(+) GTTGCC/TTAAAG 1 -- int119Minor allele frequency- T:0.14NS EA NA WA EU 2789
    rs42470001,2
    C,F,H--24771137(+) TTTTGA/GGAAAG 1 -- int128Minor allele frequency- G:0.08NS EA NA WA CSA EU 3784

    HapMap Linkage Disequilibrium report for NOP9 (24769068 - 24778330 bp)

    Structural Variations
          Database of Genomic Variants (DGV) variations for NOP9: --
    SABiosciences Cancer Mutation PCR Assays
    SeqTarget long-range PCR primers for resequencing NOP9
    DNA2.0 Custom Variant and Variant Library Synthesis for NOP9

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section
      --

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for NOP9 gene, integrated from 9 sources (see all 18):
    (articles sorted by number of sources associating them with NOP9)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Specific and modular binding code for cytosine recogni tion in Pumilio/FBF (PUF) RNA-binding domains. (PubMed id 21653694)1, 3 Dong S....Wang Z. (2011)
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    3. The DNA sequence and analysis of human chromosome 14. (PubMed id 12508121)1, 2 Heilig R.... Weissenbach J. (2003)
    4. Charting the landscape of tandem BRCT domain-mediated protein interactions. (PubMed id 22990118)1 Woods N.T....Monteiro A.N. (2012)
    5. Host cell interactome of HIV-1 Rev includes RNA helica ses involved in multiple facets of virus production. (PubMed id 22174317)1 Naji S....Gerace L. (2012)
    6. Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
    7. Initial characterization of the human central proteome. (PubMed id 21269460)2 Burkard T.R.... Colinge J. (2011)
    8. System-wide temporal characterization of the proteome and phosphoproteome of human embryonic stem cell differentiation. (PubMed id 21406692)2 Rigbolt K.T....Blagoev B. (2011)
    9. Mass spectrometric analysis of lysine ubiquitylation r eveals promiscuity at site level. (PubMed id 21139048)1 Danielsen J.M....Nielsen M.L. (2011)
    10. Global identification of modular cullin-RING ligase su bstrates. (PubMed id 21963094)1 Emanuele M.J....Elledge S.J. (2011)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 161424 HGNC: 19826 AceView: LTB4R2andC14orf21andLTB4R Ensembl:ENSG00000196943 euGenes: HUgn161424
    ECgene: NOP9 H-InvDB: NOP9

    (According to HUGE)
    About This Section
    HUGE: KIAA2021

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for NOP9 Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for NOP9 gene:
    Search GeneIP for patents involving NOP9

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0 and Sirion Biotech, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Sirion Biotech, Cell lines from GenScript, and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences, In Situ Hybridization Assays from
    Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
    About This Section

     
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    GeneCards Homepage - Last full update: 23 Oct 2013 - Incrementals: 3 Nov 2013 , 7 Nov 2013 , 23 Jan 2014

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    Category
    (GIFtS: 73)
    transforming growth factor, beta 1
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


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