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Aliases for NOMO2 Gene

Aliases for NOMO2 Gene

  • NODAL Modulator 2 2 3 5
  • PM5 Protein 2 3 4
  • PM5 Protein, Centromeric Copy 3
  • Nomo 3
  • PM5 3

External Ids for NOMO2 Gene

Previous GeneCards Identifiers for NOMO2 Gene

  • GC16M018419
  • GC16M018511

Summaries for NOMO2 Gene

Entrez Gene Summary for NOMO2 Gene

  • This gene encodes a protein originally thought to be related to the collagenase gene family. This gene is one of three highly similar genes in a region of duplication located on the p arm of chromosome 16. These three genes encode closely related proteins that may have the same function. The protein encoded by one of these genes has been identified as part of a protein complex that participates in the Nodal signaling pathway during vertebrate development. Mutations in ABCC6, which is located nearby, rather than mutations in this gene are associated with pseudoxanthoma elasticum (PXE). Two transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for NOMO2 Gene

NOMO2 (NODAL Modulator 2) is a Protein Coding gene. Diseases associated with NOMO2 include Pseudoxanthoma Elasticum and Superficial Urinary Bladder Cancer. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is NOMO3.

UniProtKB/Swiss-Prot for NOMO2 Gene

  • May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NCLN.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOMO2 Gene

Genomics for NOMO2 Gene

Regulatory Elements for NOMO2 Gene

Enhancers for NOMO2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16F018562 0.6 ENCODE 0.8 +0.1 58 0.2 MAZ NRF1 SP2 SIN3A GLIS2 POLR2A GLIS1 ZBTB26 NOMO2 GC16M018540
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NOMO2 on UCSC Golden Path with GeneCards custom track

Promoters for NOMO2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001800135 611 2001 MAZ MTA2 NR2F1 NRF1 SP2 SIN3A ZBTB40 ZNF121 GLIS2 POLR2A

Genomic Location for NOMO2 Gene

Chromosome:
16
Start:
18,417,325 bp from pter
End:
18,562,211 bp from pter
Size:
144,887 bases
Orientation:
Minus strand

Genomic View for NOMO2 Gene

Genes around NOMO2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOMO2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOMO2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOMO2 Gene

Proteins for NOMO2 Gene

  • Protein details for NOMO2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JPE7-NOMO2_HUMAN
    Recommended name:
    Nodal modulator 2
    Protein Accession:
    Q5JPE7
    Secondary Accessions:
    • Q4G177

    Protein attributes for NOMO2 Gene

    Size:
    1267 amino acids
    Molecular mass:
    139439 Da
    Quaternary structure:
    • Forms a complex with NCLN and TMEM147, resulting in a stabilization of the 3 proteins, which are otherwise quickly degraded by the proteasome.

    Alternative splice isoforms for NOMO2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NOMO2 Gene

Post-translational modifications for NOMO2 Gene

  • Glycosylation at Asn 50, Asn 218, and Asn 618
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for NOMO2 Gene

Domains & Families for NOMO2 Gene

Suggested Antigen Peptide Sequences for NOMO2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NOMO2: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NOMO2 Gene

Function for NOMO2 Gene

Molecular function for NOMO2 Gene

UniProtKB/Swiss-Prot Function:
May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NCLN.

Gene Ontology (GO) - Molecular Function for NOMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 17261586
GO:0030246 carbohydrate binding IEA --
genes like me logo Genes that share ontologies with NOMO2: view

Phenotypes for NOMO2 Gene

GenomeRNAi human phenotypes for NOMO2:
genes like me logo Genes that share phenotypes with NOMO2: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOMO2 Gene

Localization for NOMO2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOMO2 Gene

Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NOMO2 gene
Compartment Confidence
endoplasmic reticulum 5
plasma membrane 2
extracellular 2
mitochondrion 1
peroxisome 1
nucleus 1

Gene Ontology (GO) - Cellular Components for NOMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005783 endoplasmic reticulum IEA --
GO:0005789 endoplasmic reticulum membrane IEA,IDA 17261586
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NOMO2: view

Pathways & Interactions for NOMO2 Gene

SuperPathways for NOMO2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NOMO2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0031648 protein destabilization IMP 20538592
genes like me logo Genes that share ontologies with NOMO2: view

No data available for Pathways by source and SIGNOR curated interactions for NOMO2 Gene

Transcripts for NOMO2 Gene

Unigene Clusters for NOMO2 Gene

NODAL modulator 2:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOMO2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21 ^
SP1:
SP2:
SP3:
SP4:
SP5: -
SP6:

ExUns: 22a · 22b ^ 23
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for NOMO2 Gene

GeneLoc Exon Structure for
NOMO2
ECgene alternative splicing isoforms for
NOMO2

Expression for NOMO2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NOMO2 Gene

Protein differential expression in normal tissues from HIPED for NOMO2 Gene

This gene is overexpressed in Heart (19.9), Peripheral blood mononuclear cells (17.0), Brain (15.3), Placenta (9.3), and Pancreatic juice (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NOMO2 Gene



Protein tissue co-expression partners for NOMO2 Gene

NURSA nuclear receptor signaling pathways regulating expression of NOMO2 Gene:

NOMO2

SOURCE GeneReport for Unigene cluster for NOMO2 Gene:

Hs.460141

mRNA Expression by UniProt/SwissProt for NOMO2 Gene:

Q5JPE7-NOMO2_HUMAN
Tissue specificity: Highly expressed in pancreas and skeletal muscle and, at lower levels, in heart.
genes like me logo Genes that share expression patterns with NOMO2: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NOMO2 Gene

Orthologs for NOMO2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NOMO2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 99 (a)
OneToMany
cow
(Bos Taurus)
Mammalia -- 35
  • 95 (a)
OneToMany
NOMO1 34
  • 88.45 (n)
dog
(Canis familiaris)
Mammalia -- 35
  • 95 (a)
OneToMany
NOMO1 34
  • 89.97 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 87 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Nomo1 34
  • 86.82 (n)
mouse
(Mus musculus)
Mammalia Nomo1 34 35
  • 86.32 (n)
chicken
(Gallus gallus)
Aves -- 35
  • 86 (a)
OneToMany
PM5 34
  • 77.23 (n)
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 86 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia nomo3 34
  • 72.02 (n)
Str.1592 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.4837 34
zebrafish
(Danio rerio)
Actinopterygii nomo 34 35
  • 66.67 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG1371 34 35
  • 46.02 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005856 34
  • 45.18 (n)
worm
(Caenorhabditis elegans)
Secernentea nra-4 34 35
  • 42.93 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G62360 34
  • 44.96 (n)
rice
(Oryza sativa)
Liliopsida Os01g0300600 34
  • 45.37 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4870 35
  • 37 (a)
OneToMany
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7168 34
Species where no ortholog for NOMO2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NOMO2 Gene

ENSEMBL:
Gene Tree for NOMO2 (if available)
TreeFam:
Gene Tree for NOMO2 (if available)

Paralogs for NOMO2 Gene

Paralogs for NOMO2 Gene

(3) SIMAP similar genes for NOMO2 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with NOMO2: view

Variants for NOMO2 Gene

Sequence variations from dbSNP and Humsavar for NOMO2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1062413 -- 18,531,526(-) GGCCC(A/G/T)TGATG reference, missense
rs1064356 -- 18,528,639(+) CAGCT(C/T)CTTCC intron-variant
rs11075409 -- 18,533,449(+) GACAT(C/G)TGGCA intron-variant
rs111327322 -- 18,528,567(+) TCCTG(A/G)AACCC intron-variant
rs111349269 -- 18,526,914(+) AAAAA(G/T)CCATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOMO2 Gene

Variant ID Type Subtype PubMed ID
nsv984274 CNV duplication 23825009
nsv984273 CNV duplication 23825009
nsv978101 CNV duplication 23825009
nsv9379 CNV gain 18304495
nsv9363 CNV loss 18304495
nsv9362 CNV loss 18304495
nsv833160 CNV gain 17160897
nsv7278 OTHER inversion 18451855
nsv509599 CNV insertion 20534489
nsv469785 CNV gain+loss 16826518
nsv457428 CNV gain 19166990
nsv435664 CNV deletion 17901297
nsv428320 CNV loss 18775914
nsv428319 CNV loss 18775914
nsv1160365 CNV duplication 26073780
nsv1144760 CNV deletion 24896259
nsv1143812 CNV deletion 24896259
nsv1125134 CNV deletion 24896259
nsv1110271 CNV duplication 24896259
nsv1049647 CNV gain+loss 25217958
nsv1048002 CNV gain 25217958
nsv1047898 CNV loss 25217958
nsv1043239 CNV gain 25217958
esv3638111 CNV gain 21293372
esv3638110 CNV loss 21293372
esv3582069 CNV loss 25503493
esv3570398 CNV gain 25503493
esv34419 CNV gain 17911159
esv33614 CNV gain+loss 17666407
esv28069 CNV gain+loss 19812545
esv2762276 CNV gain+loss 21179565
esv2762176 CNV gain+loss 21179565
esv2760417 CNV loss 21179565
esv2758634 CNV gain+loss 17122850
esv2758633 CNV gain+loss 17122850
esv2751550 CNV gain 17911159
esv2714015 CNV deletion 23290073
esv2421404 CNV deletion 20811451
dgv4924n54 CNV gain 21841781
dgv2786n100 CNV gain+loss 25217958
dgv2785n100 CNV gain 25217958
dgv2784n100 CNV gain 25217958
dgv2783n100 CNV gain 25217958
dgv2782n100 CNV loss 25217958
dgv2781n100 CNV gain+loss 25217958
dgv2777n100 CNV loss 25217958
dgv2776n100 CNV gain+loss 25217958
dgv2775n100 CNV gain 25217958

Variation tolerance for NOMO2 Gene

Gene Damage Index Score: 4.06; 60.77% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOMO2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOMO2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NOMO2 Gene

Disorders for NOMO2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NOMO2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
pseudoxanthoma elasticum
  • pseudoxanthoma elasticum, modifier of severity of
superficial urinary bladder cancer
  • superficial urinary bladder carcinoma
- elite association - COSMIC cancer census association via MalaCards
Search NOMO2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NOMO2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOMO2
genes like me logo Genes that share disorders with NOMO2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NOMO2 Gene

Publications for NOMO2 Gene

  1. Nicalin and its binding partner Nomo are novel Nodal signaling antagonists. (PMID: 15257293) Haffner C. … Haass C. (EMBO J. 2004) 2 3 4 64
  2. Transmembrane protein 147 (TMEM147) is a novel component of the Nicalin-NOMO protein complex. (PMID: 20538592) Dettmer U. … Haffner C. (J. Biol. Chem. 2010) 3 4 64
  3. The Nicastrin-like protein Nicalin regulates assembly and stability of the Nicalin-nodal modulator (NOMO) membrane protein complex. (PMID: 17261586) Haffner C. … Haass C. (J. Biol. Chem. 2007) 3 4 64
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  5. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J. … Pennacchio L.A. (Nature 2004) 3 4 64

Products for NOMO2 Gene

Sources for NOMO2 Gene

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