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Aliases for NOMO2 Gene

Aliases for NOMO2 Gene

  • NODAL Modulator 2 2 3 5
  • PM5 Protein 2 3 4
  • PM5 Protein, Centromeric Copy 3
  • Nomo 3
  • PM5 3

External Ids for NOMO2 Gene

Previous GeneCards Identifiers for NOMO2 Gene

  • GC16M018419
  • GC16M018511

Summaries for NOMO2 Gene

Entrez Gene Summary for NOMO2 Gene

  • This gene encodes a protein originally thought to be related to the collagenase gene family. This gene is one of three highly similar genes in a region of duplication located on the p arm of chromosome 16. These three genes encode closely related proteins that may have the same function. The protein encoded by one of these genes has been identified as part of a protein complex that participates in the Nodal signaling pathway during vertebrate development. Mutations in ABCC6, which is located nearby, rather than mutations in this gene are associated with pseudoxanthoma elasticum (PXE). Two transcripts encoding different isoforms have been described. [provided by RefSeq, Jul 2008]

GeneCards Summary for NOMO2 Gene

NOMO2 (NODAL Modulator 2) is a Protein Coding gene. Diseases associated with NOMO2 include Pseudoxanthoma Elasticum and Superficial Urinary Bladder Cancer. GO annotations related to this gene include carbohydrate binding. An important paralog of this gene is NOMO1.

UniProtKB/Swiss-Prot for NOMO2 Gene

  • May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NCLN.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOMO2 Gene

Genomics for NOMO2 Gene

Regulatory Elements for NOMO2 Gene

Enhancers for NOMO2 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NOMO2 on UCSC Golden Path with GeneCards custom track

Promoters for NOMO2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NOMO2 on UCSC Golden Path with GeneCards custom track

Genomic Location for NOMO2 Gene

Chromosome:
16
Start:
18,417,325 bp from pter
End:
18,562,211 bp from pter
Size:
144,887 bases
Orientation:
Minus strand

Genomic View for NOMO2 Gene

Genes around NOMO2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOMO2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOMO2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOMO2 Gene

Proteins for NOMO2 Gene

  • Protein details for NOMO2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5JPE7-NOMO2_HUMAN
    Recommended name:
    Nodal modulator 2
    Protein Accession:
    Q5JPE7
    Secondary Accessions:
    • Q4G177

    Protein attributes for NOMO2 Gene

    Size:
    1267 amino acids
    Molecular mass:
    139439 Da
    Quaternary structure:
    • Forms a complex with NCLN and TMEM147, resulting in a stabilization of the 3 proteins, which are otherwise quickly degraded by the proteasome.

    Alternative splice isoforms for NOMO2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NOMO2 Gene

Proteomics data for NOMO2 Gene at MOPED

Post-translational modifications for NOMO2 Gene

  • Glycosylation at Asn 50, Asn 218, and Asn 618
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for NOMO2 Gene

Domains & Families for NOMO2 Gene

Protein Domains for NOMO2 Gene

Suggested Antigen Peptide Sequences for NOMO2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NOMO2: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NOMO2 Gene

Function for NOMO2 Gene

Molecular function for NOMO2 Gene

UniProtKB/Swiss-Prot Function:
May antagonize Nodal signaling and subsequent organization of axial structures during mesodermal patterning, via its interaction with NCLN.

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOMO2 Gene

Localization for NOMO2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOMO2 Gene

Endoplasmic reticulum membrane; Single-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NOMO2 Gene COMPARTMENTS Subcellular localization image for NOMO2 gene
Compartment Confidence
endoplasmic reticulum 5
extracellular 2
plasma membrane 2
mitochondrion 1
nucleus 1
peroxisome 1

No data available for Gene Ontology (GO) - Cellular Components for NOMO2 Gene

Pathways & Interactions for NOMO2 Gene

SuperPathways for NOMO2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NOMO2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOMO2 Gene

Drugs & Compounds for NOMO2 Gene

No Compound Related Data Available

Transcripts for NOMO2 Gene

Unigene Clusters for NOMO2 Gene

NODAL modulator 2:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NOMO2 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12a · 12b · 12c ^ 13 ^ 14 ^ 15 ^ 16a · 16b · 16c ^ 17a · 17b ^ 18 ^ 19 ^ 20 ^ 21 ^
SP1:
SP2:
SP3:
SP4:
SP5: -
SP6:

ExUns: 22a · 22b ^ 23
SP1:
SP2:
SP3:
SP4:
SP5:
SP6:

Relevant External Links for NOMO2 Gene

GeneLoc Exon Structure for
NOMO2
ECgene alternative splicing isoforms for
NOMO2

Expression for NOMO2 Gene

mRNA expression in normal human tissues for NOMO2 Gene

Protein differential expression in normal tissues from HIPED for NOMO2 Gene

This gene is overexpressed in Heart (19.9), Peripheral blood mononuclear cells (17.0), Brain (15.3), Placenta (9.3), and Pancreatic juice (7.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for NOMO2 Gene



SOURCE GeneReport for Unigene cluster for NOMO2 Gene Hs.460141

mRNA Expression by UniProt/SwissProt for NOMO2 Gene

Q5JPE7-NOMO2_HUMAN
Tissue specificity: Highly expressed in pancreas and skeletal muscle and, at lower levels, in heart.
genes like me logo Genes that share expression patterns with NOMO2: view

Protein tissue co-expression partners for NOMO2 Gene

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NOMO2 Gene

Orthologs for NOMO2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NOMO2 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NOMO1 35
  • 88.45 (n)
  • 94.83 (a)
-- 36
  • 95 (a)
OneToMany
dog
(Canis familiaris)
Mammalia NOMO1 35
  • 89.97 (n)
  • 95.97 (a)
-- 36
  • 95 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Nomo1 35
  • 86.32 (n)
  • 93.28 (a)
Nomo1 36
  • 93 (a)
OneToMany
rat
(Rattus norvegicus)
Mammalia Nomo1 35
  • 86.82 (n)
  • 93.69 (a)
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 87 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia -- 36
  • 99 (a)
OneToMany
chicken
(Gallus gallus)
Aves PM5 35
  • 77.23 (n)
  • 87.14 (a)
-- 36
  • 86 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 86 (a)
OneToMany
tropical clawed frog
(Silurana tropicalis)
Amphibia nomo3 35
  • 72.02 (n)
  • 79.9 (a)
Str.1592 35
African clawed frog
(Xenopus laevis)
Amphibia Xl.4837 35
zebrafish
(Danio rerio)
Actinopterygii nomo 35
  • 66.67 (n)
  • 70.94 (a)
nomo 36
  • 70 (a)
OneToMany
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005856 35
  • 45.18 (n)
  • 35 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG1371 35
  • 46.02 (n)
  • 34.21 (a)
CG1371 36
  • 31 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea nra-4 35
  • 42.93 (n)
  • 27.68 (a)
nra-4 36
  • 25 (a)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT3G62360 35
  • 44.96 (n)
  • 34.26 (a)
rice
(Oryza sativa)
Liliopsida Os01g0300600 35
  • 45.37 (n)
  • 39.65 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.7168 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.4870 36
  • 37 (a)
OneToMany
Species with no ortholog for NOMO2:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NOMO2 Gene

ENSEMBL:
Gene Tree for NOMO2 (if available)
TreeFam:
Gene Tree for NOMO2 (if available)

Paralogs for NOMO2 Gene

Paralogs for NOMO2 Gene

(3) SIMAP similar genes for NOMO2 Gene using alignment to 6 proteins:

genes like me logo Genes that share paralogs with NOMO2: view

Variants for NOMO2 Gene

Sequence variations from dbSNP and Humsavar for NOMO2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs15984 - 18,529,569(-) ATGAC(A/G)TGTCT reference, missense
VAR_034138 -
VAR_034139 -
VAR_034140 -
rs86394 -- 18,544,140(-) gaggc(A/G)ggcgg intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOMO2 Gene

Variant ID Type Subtype PubMed ID
nsv7278 OTHER Inversion 18451855
esv2751550 CNV Gain 17911159
esv587 CNV CNV 17122850
dgv822e1 CNV Complex 17122850
dgv823e1 CNV Complex 17122850
dgv2633n71 CNV Gain 21882294
nsv428320 CNV Loss 18775914
nsv905522 CNV Gain 21882294
dgv824e1 CNV Complex 17122850
esv34419 CNV Gain 17911159
nsv905536 CNV Gain 21882294
nsv509601 CNV Insertion 20534489
nsv905537 CNV Gain 21882294
esv28183 CNV Gain+Loss 19812545
nsv833160 CNV Gain 17160897
nsv9378 CNV Gain+Loss 18304495
esv990950 CNV Gain 20482838
essv8865 CNV CNV 17122850
dgv825e1 CNV Complex 17122850
nsv9379 CNV Gain 18304495
dgv2636n71 CNV Loss 21882294
dgv2637n71 CNV Loss 21882294
esv2421404 CNV Deletion 20811451

Variation tolerance for NOMO2 Gene

Gene Damage Index Score: 4.06; 60.77% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for NOMO2 Gene

Disorders for NOMO2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NOMO2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
pseudoxanthoma elasticum
  • pseudoxanthoma elasticum, modifier of severity of
superficial urinary bladder cancer
  • superficial urinary bladder carcinoma
- elite association - COSMIC cancer census association via MalaCards
Search NOMO2 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NOMO2

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOMO2
genes like me logo Genes that share disorders with NOMO2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NOMO2 Gene

Publications for NOMO2 Gene

  1. Nicalin and its binding partner Nomo are novel Nodal signaling antagonists. (PMID: 15257293) Haffner C. … Haass C. (EMBO J. 2004) 2 3 4 67
  2. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3
  3. Proteomic Analysis of the EWS-Fli-1 Interactome Reveals the Role of the Lysosome in EWS-Fli-1 Turnover. (PMID: 24999758) Elzi D.J. … Shiio Y. (J. Proteome Res. 2014) 3
  4. Proteomic identification of common SCF ubiquitin ligase FBXO6-interacting glycoproteins in three kinds of cells. (PMID: 22268729) Liu B. … Wang L.S. (J. Proteome Res. 2012) 3
  5. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3

Products for NOMO2 Gene

Sources for NOMO2 Gene

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