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Aliases for NOM1 Gene

Aliases for NOM1 Gene

  • Nucleolar Protein With MIF4G Domain 1 2 3 5
  • Protein Phosphatase 1, Regulatory Subunit 113 2 3
  • SGD1 Homolog 3 4
  • C7orf3 3 4
  • Nucleolar MIF4G Domain-Containing Protein 1 3
  • Chromosome 7 Open Reading Frame 3 2
  • PPP1R113 3
  • SGD1 3

External Ids for NOM1 Gene

Previous HGNC Symbols for NOM1 Gene

  • C7orf3

Previous GeneCards Identifiers for NOM1 Gene

  • GC00U921619
  • GC07P156242
  • GC07P156435
  • GC07P156742
  • GC07P150475

Summaries for NOM1 Gene

Entrez Gene Summary for NOM1 Gene

  • Proteins that contain MIF4G (middle of eIF4G (MIM 600495)) and/or MA3 domains, such as NOM1, function in protein translation. These domains include binding sites for members of the EIF4A family of ATP-dependent DEAD box RNA helicases (see EIF4A1; MIM 602641) (Simmons et al., 2005 [PubMed 15715967]).[supplied by OMIM, Mar 2008]

GeneCards Summary for NOM1 Gene

NOM1 (Nucleolar Protein With MIF4G Domain 1) is a Protein Coding gene. Diseases associated with NOM1 include Ovarian Mucinous Adenocarcinoma. GO annotations related to this gene include poly(A) RNA binding and binding.

UniProtKB/Swiss-Prot for NOM1 Gene

  • Plays a role in targeting PPP1CA to the nucleolus.

Gene Wiki entry for NOM1 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOM1 Gene

Genomics for NOM1 Gene

Regulatory Elements for NOM1 Gene

Enhancers for NOM1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH07G157298 1.9 FANTOM5 Ensembl ENCODE dbSUPER 68.7 +351.2 351231 4.9 HDGF ARNT ZFP64 SIN3A YBX1 ZNF2 CBX5 ZNF207 ZNF548 MCM3 NOM1 DNAJB6 UBE3C GC07M157304 GC07M157305 ENSG00000229660
GH07G156948 1.1 ENCODE 35.6 +0.8 802 3.7 HDGF CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF207 NOM1 RPL36AP30 PIR33298
GH07G157275 1.7 FANTOM5 Ensembl ENCODE dbSUPER 21.8 +327.2 327244 2.8 YBX3 NFIB ZFP64 RAD21 GLIS2 EGR1 ZNF354C FOS ZBTB11 ELF4 NOM1 UBE3C DNAJB6 ENSG00000229660 C7orf13 PIR42191
GH07G157345 1.1 ENCODE 31.2 +397.2 397169 2.2 HDGF FOXA2 PKNOX1 CREB3L1 ARID4B SIN3A DMAP1 FEZF1 ZNF2 YY1 NOM1 LOC100506585 GC07P157345 GC07M157268
GH07G157335 1.1 ENCODE 18.4 +388.7 388677 5.0 HDGF PKNOX1 ARNT WRNIP1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF766 NOM1 RPL36AP30 LOC100506585 PIR48695 GC07P157345
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NOM1 on UCSC Golden Path with GeneCards custom track

Promoters for NOM1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000220172 377 3001 HDGF CREB3L1 ARNT AGO1 ARID4B SIN3A DMAP1 ZNF2 YY1 ZNF143

Transcription factor binding sites by QIAGEN in the NOM1 gene promoter:

Genomic Location for NOM1 Gene

Chromosome:
7
Start:
156,949,723 bp from pter
End:
156,973,182 bp from pter
Size:
23,460 bases
Orientation:
Plus strand

Genomic View for NOM1 Gene

Genes around NOM1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOM1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOM1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOM1 Gene

Proteins for NOM1 Gene

  • Protein details for NOM1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q5C9Z4-NOM1_HUMAN
    Recommended name:
    Nucleolar MIF4G domain-containing protein 1
    Protein Accession:
    Q5C9Z4
    Secondary Accessions:
    • Q96I08

    Protein attributes for NOM1 Gene

    Size:
    860 amino acids
    Molecular mass:
    96257 Da
    Quaternary structure:
    • May interact with EIF4A1, EIF4A2 and EIF4A3. Interacts with PPP1CA and PPP1CC.

neXtProt entry for NOM1 Gene

Post-translational modifications for NOM1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NOM1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NOM1 Gene

Domains & Families for NOM1 Gene

Gene Families for NOM1 Gene

Suggested Antigen Peptide Sequences for NOM1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q5C9Z4

UniProtKB/Swiss-Prot:

NOM1_HUMAN :
  • Belongs to the CWC22 family.
Family:
  • Belongs to the CWC22 family.
genes like me logo Genes that share domains with NOM1: view

Function for NOM1 Gene

Molecular function for NOM1 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in targeting PPP1CA to the nucleolus.

Gene Ontology (GO) - Molecular Function for NOM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding IDA 22681889
GO:0005515 protein binding IPI 17965019
genes like me logo Genes that share ontologies with NOM1: view
genes like me logo Genes that share phenotypes with NOM1: view

Animal Model Products

CRISPR Products

miRNA for NOM1 Gene

miRTarBase miRNAs that target NOM1

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NOM1 Gene

Localization for NOM1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOM1 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NOM1 gene
Compartment Confidence
nucleus 5

Gene Ontology (GO) - Cellular Components for NOM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA,IEA 15715967
genes like me logo Genes that share ontologies with NOM1: view

Pathways & Interactions for NOM1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NOM1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0022008 neurogenesis IBA --
GO:0042274 ribosomal small subunit biogenesis IBA --
GO:0048820 hair follicle maturation IEA --
genes like me logo Genes that share ontologies with NOM1: view

No data available for Pathways by source and SIGNOR curated interactions for NOM1 Gene

Drugs & Compounds for NOM1 Gene

No Compound Related Data Available

Transcripts for NOM1 Gene

Unigene Clusters for NOM1 Gene

Nucleolar protein with MIF4G domain 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOM1 Gene

ExUns: 1 ^ 2 ^ 3a · 3b ^ 4 ^ 5 ^ 6a · 6b ^ 7a · 7b · 7c ^ 8a · 8b ^ 9a · 9b ^ 10 ^ 11 ^ 12a · 12b ^ 13a · 13b
SP1: - - -
SP2: - -
SP3: -
SP4: -
SP5: -
SP6:
SP7:
SP8:

Relevant External Links for NOM1 Gene

GeneLoc Exon Structure for
NOM1
ECgene alternative splicing isoforms for
NOM1

Expression for NOM1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NOM1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NOM1 Gene

This gene is overexpressed in Brain (35.9) and Peripheral blood mononuclear cells (10.6).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NOM1 Gene



NURSA nuclear receptor signaling pathways regulating expression of NOM1 Gene:

NOM1

SOURCE GeneReport for Unigene cluster for NOM1 Gene:

Hs.15825

mRNA Expression by UniProt/SwissProt for NOM1 Gene:

Q5C9Z4-NOM1_HUMAN
Tissue specificity: Expressed in heart and skeletal muscle.

Evidence on tissue expression from TISSUES for NOM1 Gene

  • Muscle(4.2)
genes like me logo Genes that share expression patterns with NOM1: view

Primer Products

No data available for mRNA differential expression in normal tissues , Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOM1 Gene

Orthologs for NOM1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NOM1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NOM1 34 35
  • 98.41 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NOM1 35
  • 78 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nom1 34 16 35
  • 76.14 (n)
cow
(Bos Taurus)
Mammalia NOM1 34 35
  • 75.64 (n)
dog
(Canis familiaris)
Mammalia NOM1 34 35
  • 75.21 (n)
rat
(Rattus norvegicus)
Mammalia LOC682058 34
  • 70.25 (n)
oppossum
(Monodelphis domestica)
Mammalia NOM1 35
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves NOM1 34 35
  • 72.42 (n)
lizard
(Anolis carolinensis)
Reptilia NOM1 35
  • 57 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.10492 34
zebrafish
(Danio rerio)
Actinopterygii nom1 34 35
  • 64.23 (n)
Dr.6026 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP011285 34
  • 51.09 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG9004 34 35
  • 49.42 (n)
worm
(Caenorhabditis elegans)
Secernentea CELE_Y52B11A.10 34
  • 42.1 (n)
Y52B11A.10 35
  • 25 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SGD1 35 37
  • 20 (a)
OneToOne
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G17930 34
  • 47.11 (n)
rice
(Oryza sativa)
Liliopsida Os05g0147200 34
  • 47.51 (n)
Os.18996 34
Species where no ortholog for NOM1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NOM1 Gene

ENSEMBL:
Gene Tree for NOM1 (if available)
TreeFam:
Gene Tree for NOM1 (if available)

Paralogs for NOM1 Gene

No data available for Paralogs for NOM1 Gene

Variants for NOM1 Gene

Sequence variations from dbSNP and Humsavar for NOM1 Gene

SNP ID Clin Chr 07 pos Sequence Context AA Info Type
rs1000043819 -- 156,952,998(+) TTTAA(A/G)AACAG intron-variant
rs1000078474 -- 156,968,695(+) TATAT(A/T)TATAT intron-variant
rs1000267647 -- 156,955,041(+) TTTCT(A/G)TGTCA intron-variant
rs1000530213 -- 156,954,574(+) GGCTG(A/G)AGTGC intron-variant
rs1000619224 -- 156,948,255(+) CACAC(C/T)TGTAA upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NOM1 Gene

Variant ID Type Subtype PubMed ID
esv2735655 CNV deletion 23290073
esv3615681 CNV loss 21293372
nsv1015433 CNV gain 25217958
nsv1141840 CNV insertion 24896259
nsv465249 CNV loss 19166990
nsv609210 CNV loss 21841781
nsv824415 CNV gain 20364138

Variation tolerance for NOM1 Gene

Residual Variation Intolerance Score: 83.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 23.23; 99.52% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOM1 Gene

Human Gene Mutation Database (HGMD)
NOM1
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOM1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NOM1 Gene

Disorders for NOM1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NOM1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
ovarian mucinous adenocarcinoma
  • mucinous carcinoma of ovary
- elite association - COSMIC cancer census association via MalaCards
Search NOM1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NOM1

Genetic Association Database (GAD)
NOM1
Human Genome Epidemiology (HuGE) Navigator
NOM1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOM1
genes like me logo Genes that share disorders with NOM1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NOM1 Gene

Publications for NOM1 Gene

  1. A physical and transcriptional map of the preaxial polydactyly locus on chromosome 7q36. (PMID: 10329000) Heus H.C. … Heutink P. (Genomics 1999) 2 3 4 64
  2. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose J.E. … Uhl G.R. (Mol. Med. 2010) 3 46 64
  3. NOM1 targets protein phosphatase I to the nucleolus. (PMID: 17965019) Gunawardena S.R. … Conklin K.F. (J. Biol. Chem. 2008) 3 4 64
  4. Identification of NOM1, a nucleolar, eIF4A binding protein encoded within the chromosome 7q36 breakpoint region targeted in cases of pediatric acute myeloid leukemia. (PMID: 15715967) Simmons H.M. … Conklin K.F. (Gene 2005) 3 4 64
  5. Temporal proteomics of NGF-TrkA signaling identifies an inhibitory role for the E3 ligase Cbl-b in neuroblastoma cell differentiation. (PMID: 25921289) Emdal K.B. … Olsen J.V. (Sci Signal 2015) 3 64

Products for NOM1 Gene

Sources for NOM1 Gene

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