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Aliases for NOLC1 Gene

Aliases for NOLC1 Gene

  • Nucleolar And Coiled-Body Phosphoprotein 1 2 3 5
  • Hepatitis C Virus NS5A-Transactivated Protein 13 3 4
  • HCV NS5A-Transactivated Protein 13 3 4
  • 140 KDa Nucleolar Phosphoprotein 3 4
  • Nucleolar Phosphoprotein P130 3 4
  • Nucleolar 130 KDa Protein 3 4
  • NS5ATP13 3 4
  • NOPP140 3 4
  • Nucleolar And Coiled-Body Phosphprotein 1 3
  • HCV NS5A Trans-Regulated Protein 13 3
  • Nucleolar Protein P130 3
  • KIAA0035 4
  • NOPP130 3
  • P130 3

External Ids for NOLC1 Gene

Previous GeneCards Identifiers for NOLC1 Gene

  • GC10P102805
  • GC10P103145
  • GC10P104043
  • GC10P103576
  • GC10P103902
  • GC10P097544

Summaries for NOLC1 Gene

GeneCards Summary for NOLC1 Gene

NOLC1 (Nucleolar And Coiled-Body Phosphoprotein 1) is a Protein Coding gene. Diseases associated with NOLC1 include Treacher Collins Syndrome 1. GO annotations related to this gene include poly(A) RNA binding and GTP binding.

UniProtKB/Swiss-Prot for NOLC1 Gene

  • Nucleolar protein that acts as a regulator of RNA polymerase I by connecting RNA polymerase I with enzymes responsible for ribosomal processing and modification (PubMed:10567578, PubMed:26399832). Required for neural crest specification: following monoubiquitination by the BCR(KBTBD8) complex, associates with TCOF1 and acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification (PubMed:26399832). Involved in nucleologenesis, possibly by playing a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus (PubMed:9016786). It has intrinsic GTPase and ATPase activities (PubMed:9016786).

Gene Wiki entry for NOLC1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOLC1 Gene

Genomics for NOLC1 Gene

Regulatory Elements for NOLC1 Gene

Enhancers for NOLC1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10G102111 1.8 FANTOM5 ENCODE dbSUPER 11.7 -34.4 -34443 11.6 HDGF PKNOX1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 ZBTB7B YY1 CBX5 LDB1 HPS6 PPRC1 NOLC1 BORCS7 NFKB2 C10orf95 KCNIP2-AS1 KCNIP2 PSD
GH10G102127 1.1 ENCODE dbSUPER 11.7 -24.1 -24133 1.3 NFIB ZSCAN4 KLF17 DNMT3B ZNF2 RAD21 ZEB1 ZNF335 ZNF366 ZNF143 LDB1 HPS6 NOLC1 KCNIP2 KCNIP2-AS1 PPRC1
GH10G102342 1.2 FANTOM5 Ensembl ENCODE 10.5 +191.2 191241 2.3 SCRT1 TEAD4 CBX2 ETS1 FOXA1 BCL11A GATA2 POLR2A SCRT2 POU5F1 PITX3 GBF1 ELOVL3 NOLC1 PSD FBXL15 C10orf95 MFSD13A ACTR1A NFKB2
GH10G102333 1 ENCODE dbSUPER 10.2 +182.6 182571 1.5 ZNF7 ZEB1 ZNF335 FOSL1 HIC1 FOS EZH2 ZNF639 ZNF280D ZNF362 FBXL15 ELOVL3 GBF1 PITX3 NFKB2 NOLC1 PSD GC10P102289
GH10G102347 0.6 ENCODE 10.5 +195.2 195243 0.2 CTCF ZNF654 SMC3 REST RAD21 ZKSCAN1 ELOVL3 NOLC1 NFKB2 GC10P102289
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NOLC1 on UCSC Golden Path with GeneCards custom track

Promoters for NOLC1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000032695 524 1401 CREB3L1 AGO1 FEZF1 DMAP1 YY1 ZNF143 SP3 NFYC TBX21 GLIS1

Genomic Location for NOLC1 Gene

Chromosome:
10
Start:
102,152,176 bp from pter
End:
102,163,871 bp from pter
Size:
11,696 bases
Orientation:
Plus strand

Genomic View for NOLC1 Gene

Genes around NOLC1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOLC1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOLC1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOLC1 Gene

Proteins for NOLC1 Gene

  • Protein details for NOLC1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q14978-NOLC1_HUMAN
    Recommended name:
    Nucleolar and coiled-body phosphoprotein 1
    Protein Accession:
    Q14978
    Secondary Accessions:
    • Q15030
    • Q5VV70
    • Q9BUV3

    Protein attributes for NOLC1 Gene

    Size:
    699 amino acids
    Molecular mass:
    73603 Da
    Quaternary structure:
    • Heterodimer; heterodimerizes with TCOF1 following monoubiquitination (PubMed:26399832). Interacts with RNA polymerase I 194 kDa subunit (RPA194) and with casein kinase-II (PubMed:10567578). Interacts with DKC1/NAP57, NOP58 and fibrillarin (By similarity).

    Alternative splice isoforms for NOLC1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NOLC1 Gene

Post-translational modifications for NOLC1 Gene

  • Ubiquitinated. Monoubiquitination by the BCR(KBTBD8) complex promotes the formation of a NOLC1-TCOF1 complex that acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification (PubMed:26399832).
  • Undergoes rapid and massive phosphorylation/dephosphorylation cycles on CK2 and PKC sites. NOLC1 is one of the mostly phosphorylated proteins in the cell.
  • Ubiquitination at posLast=5959
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for NOLC1 Gene

Domains & Families for NOLC1 Gene

Protein Domains for NOLC1 Gene

Suggested Antigen Peptide Sequences for NOLC1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NOLC1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NOLC1 Gene

Function for NOLC1 Gene

Molecular function for NOLC1 Gene

UniProtKB/Swiss-Prot Function:
Nucleolar protein that acts as a regulator of RNA polymerase I by connecting RNA polymerase I with enzymes responsible for ribosomal processing and modification (PubMed:10567578, PubMed:26399832). Required for neural crest specification: following monoubiquitination by the BCR(KBTBD8) complex, associates with TCOF1 and acts as a platform to connect RNA polymerase I with enzymes responsible for ribosomal processing and modification, leading to remodel the translational program of differentiating cells in favor of neural crest specification (PubMed:26399832). Involved in nucleologenesis, possibly by playing a role in the maintenance of the fundamental structure of the fibrillar center and dense fibrillar component in the nucleolus (PubMed:9016786). It has intrinsic GTPase and ATPase activities (PubMed:9016786).

Gene Ontology (GO) - Molecular Function for NOLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001042 RNA polymerase I core binding IDA 26399832
GO:0003723 RNA binding IDA 22658674
GO:0005515 protein binding IPI 17620599
GO:0005524 ATP binding IEA --
GO:0005525 GTP binding IEA --
genes like me logo Genes that share ontologies with NOLC1: view
genes like me logo Genes that share phenotypes with NOLC1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NOLC1 Gene

Localization for NOLC1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOLC1 Gene

Nucleus, nucleolus. Cytoplasm. Note=Shuttles between the nucleolus and the cytoplasm. At telophase it begins to assemble into granular-like pre-nucleolar bodies which are subsequently relocated to nucleoli at the early G1-phase. {ECO:0000269 PubMed:7657714}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NOLC1 gene
Compartment Confidence
nucleus 5
cytosol 2

Gene Ontology (GO) - Cellular Components for NOLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005654 nucleoplasm IBA,IEA --
GO:0005730 nucleolus IDA,TAS --
GO:0005737 cytoplasm IEA,TAS --
GO:0015030 Cajal body IEA --
genes like me logo Genes that share ontologies with NOLC1: view

Pathways & Interactions for NOLC1 Gene

SuperPathways for NOLC1 Gene

No Data Available

SIGNOR curated interactions for NOLC1 Gene

Is activated by:

Gene Ontology (GO) - Biological Process for NOLC1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000278 mitotic cell cycle TAS 7657714
GO:0006364 rRNA processing TAS 7657714
GO:0006417 regulation of translation IMP 26399832
GO:0007000 nucleolus organization IEA --
GO:0007049 cell cycle TAS 7657714
genes like me logo Genes that share ontologies with NOLC1: view

No data available for Pathways by source for NOLC1 Gene

Drugs & Compounds for NOLC1 Gene

(4) Drugs for NOLC1 Gene - From: HMDB and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Guanosine triphosphate Experimental Pharma 0
genes like me logo Genes that share compounds with NOLC1: view

Transcripts for NOLC1 Gene

Unigene Clusters for NOLC1 Gene

Nucleolar and coiled-body phosphoprotein 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOLC1 Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10a · 10b ^ 11 ^ 12 ^ 13a · 13b
SP1: -
SP2:
SP3: - - - -
SP4: -
SP5:
SP6: - - -
SP7: -
SP8: - - - - - - -
SP9:

Relevant External Links for NOLC1 Gene

GeneLoc Exon Structure for
NOLC1
ECgene alternative splicing isoforms for
NOLC1

Expression for NOLC1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NOLC1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NOLC1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (14.3), Adrenal (10.4), Nasal epithelium (9.8), and Lung (7.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NOLC1 Gene



Protein tissue co-expression partners for NOLC1 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NOLC1 Gene:

NOLC1

SOURCE GeneReport for Unigene cluster for NOLC1 Gene:

Hs.523238

Evidence on tissue expression from TISSUES for NOLC1 Gene

  • Lung(4.6)
  • Liver(4.4)
  • Nervous system(4.3)
  • Bone marrow(4.2)
  • Intestine(2.7)
  • Skin(2.7)
genes like me logo Genes that share expression patterns with NOLC1: view

Primer Products

No data available for mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOLC1 Gene

Orthologs for NOLC1 Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for NOLC1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NOLC1 34 35
  • 99 (n)
dog
(Canis familiaris)
Mammalia NOLC1 34 35
  • 82.69 (n)
cow
(Bos Taurus)
Mammalia NOLC1 34 35
  • 79 (n)
rat
(Rattus norvegicus)
Mammalia Nolc1 34
  • 77.17 (n)
mouse
(Mus musculus)
Mammalia Nolc1 35
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NOLC1 35
  • 50 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NOLC1 35
  • 46 (a)
OneToOne
chicken
(Gallus gallus)
Aves NOLC1 35
  • 47 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NOLC1 35
  • 44 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC395027 34
African clawed frog
(Xenopus laevis)
Amphibia xNopp180 34
zebrafish
(Danio rerio)
Actinopterygii nolc1 35
  • 27 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea dao-5 35
  • 25 (a)
OneToOne
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes SRP40 35
  • 35 (a)
OneToOne
sea squirt
(Ciona savignyi)
Ascidiacea CSA.11097 35
  • 29 (a)
OneToOne
Species where no ortholog for NOLC1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NOLC1 Gene

ENSEMBL:
Gene Tree for NOLC1 (if available)
TreeFam:
Gene Tree for NOLC1 (if available)

Paralogs for NOLC1 Gene

Pseudogenes.org Pseudogenes for NOLC1 Gene

genes like me logo Genes that share paralogs with NOLC1: view

No data available for Paralogs for NOLC1 Gene

Variants for NOLC1 Gene

Sequence variations from dbSNP and Humsavar for NOLC1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs1000194324 -- 102,150,419(+) CTCCC(G/T)GGTCA downstream-variant-500B, upstream-variant-2KB
rs1000390197 -- 102,162,930(+) TATGG(C/T)GTGAA utr-variant-3-prime
rs1000522434 -- 102,155,308(+) GCGTT(C/T)AGCCA intron-variant
rs1000658253 -- 102,155,079(+) GTGCA(A/G)TGGTG intron-variant
rs1000670984 -- 102,161,764(+) TGCCC(A/G)TGTGT intron-variant

Variation tolerance for NOLC1 Gene

Residual Variation Intolerance Score: 32.5% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 4.28; 62.70% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOLC1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOLC1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NOLC1 Gene

Disorders for NOLC1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NOLC1 Gene - From: DISEASES

Disorder Aliases PubMed IDs
treacher collins syndrome 1
  • treacher collins syndrome
- elite association - COSMIC cancer census association via MalaCards
Search NOLC1 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NOLC1

Genetic Association Database (GAD)
NOLC1
Human Genome Epidemiology (HuGE) Navigator
NOLC1
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOLC1
genes like me logo Genes that share disorders with NOLC1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NOLC1 Gene

Publications for NOLC1 Gene

  1. Human Nopp140, which interacts with RNA polymerase I: implications for rRNA gene transcription and nucleolar structural organization. (PMID: 10567578) Chen H.-K. … Yeh N.-H. (Mol. Cell. Biol. 1999) 2 3 4 22 64
  2. Cell-cycle-dependent alterations of a highly phosphorylated nucleolar protein p130 are associated with nucleologenesis. (PMID: 7657714) Pai C.-Y. … Yeh N.-H. (J. Cell Sci. 1995) 2 3 4 22 64
  3. The nucleolar phosphoprotein P130 is a GTPase/ATPase with intrinsic property to form large complexes triggered by F- and Mg2+. (PMID: 9016786) Chen H.-K. … Yeh N.-H. (Biochem. Biophys. Res. Commun. 1997) 3 4 22 64
  4. Cell proliferation-dependent expression of two isoforms of the nucleolar phosphoprotein p130. (PMID: 8630004) Pai C.-Y. … Yeh N.-H. (Biochem. Biophys. Res. Commun. 1996) 3 4 22 64
  5. Cell-fate determination by ubiquitin-dependent regulation of translation. (PMID: 26399832) Werner A. … Rape M. (Nature 2015) 3 4 64

Products for NOLC1 Gene

Sources for NOLC1 Gene

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