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Aliases for NOL4 Gene

Aliases for NOL4 Gene

  • Nucleolar Protein 4 2 3 5
  • Cancer/Testis Antigen 125 2 3
  • NOLP 3 4
  • Nucleolar Localized Protein 3
  • Nucleolar-Localized Protein 4
  • HRIHFB2255 3
  • CT125 3

External Ids for NOL4 Gene

Previous GeneCards Identifiers for NOL4 Gene

  • GC18M031465
  • GC18M031251
  • GC18M029684
  • GC18M029686
  • GC18M028290

Summaries for NOL4 Gene

GeneCards Summary for NOL4 Gene

NOL4 (Nucleolar Protein 4) is a Protein Coding gene. GO annotations related to this gene include RNA binding. An important paralog of this gene is NOL4L.

Gene Wiki entry for NOL4 Gene

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOL4 Gene

Genomics for NOL4 Gene

Regulatory Elements for NOL4 Gene

Enhancers for NOL4 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NOL4 on UCSC Golden Path with GeneCards custom track

Promoters for NOL4 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NOL4 on UCSC Golden Path with GeneCards custom track

Genomic Location for NOL4 Gene

Chromosome:
18
Start:
33,851,100 bp from pter
End:
34,224,952 bp from pter
Size:
373,853 bases
Orientation:
Minus strand

Genomic View for NOL4 Gene

Genes around NOL4 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOL4 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOL4 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOL4 Gene

Proteins for NOL4 Gene

  • Protein details for NOL4 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O94818-NOL4_HUMAN
    Recommended name:
    Nucleolar protein 4
    Protein Accession:
    O94818
    Secondary Accessions:
    • B4DSQ0
    • B7Z3Z7
    • F5H1E3
    • Q6IBS2
    • Q9BWF1

    Protein attributes for NOL4 Gene

    Size:
    638 amino acids
    Molecular mass:
    71357 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH00313.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknown origin in the N-terminal part.; Evidence={ECO:0000305}; Sequence=BAA34576.1; Type=Erroneous termination; Positions=38; Note=Translated as Gln.; Evidence={ECO:0000305}; Sequence=BAA34576.1; Type=Frameshift; Positions=82; Evidence={ECO:0000305};

    Alternative splice isoforms for NOL4 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NOL4 Gene

Proteomics data for NOL4 Gene at MOPED

Post-translational modifications for NOL4 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NOL4 Gene

Domains & Families for NOL4 Gene

Protein Domains for NOL4 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NOL4: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NOL4 Gene

Function for NOL4 Gene

Molecular function for NOL4 Gene

GENATLAS Biochemistry:
nucleolar protein 4

Gene Ontology (GO) - Molecular Function for NOL4 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003723 RNA binding TAS 9813152
genes like me logo Genes that share ontologies with NOL4: view
genes like me logo Genes that share phenotypes with NOL4: view

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NOL4 Gene

Localization for NOL4 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOL4 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NOL4 Gene COMPARTMENTS Subcellular localization image for NOL4 gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for NOL4 Gene

Pathways & Interactions for NOL4 Gene

SuperPathways for NOL4 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NOL4 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOL4 Gene

Drugs & Compounds for NOL4 Gene

No Compound Related Data Available

Transcripts for NOL4 Gene

Unigene Clusters for NOL4 Gene

Nucleolar protein 4:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NOL4 Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1: - -
SP2: -
SP3: - - - -

Relevant External Links for NOL4 Gene

GeneLoc Exon Structure for
NOL4
ECgene alternative splicing isoforms for
NOL4

Expression for NOL4 Gene

mRNA expression in normal human tissues for NOL4 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NOL4 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x5.5), Brain - Anterior cingulate cortex (BA24) (x5.5), Brain - Cerebellar Hemisphere (x4.4), Brain - Cortex (x4.1), and Brain - Nucleus accumbens (basal ganglia) (x4.0).

Protein differential expression in normal tissues from HIPED for NOL4 Gene

This gene is overexpressed in Frontal cortex (61.9).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for NOL4 Gene



SOURCE GeneReport for Unigene cluster for NOL4 Gene Hs.514795

mRNA Expression by UniProt/SwissProt for NOL4 Gene

O94818-NOL4_HUMAN
Tissue specificity: Expressed predominantly in fetal brain, adult brain and testis.
genes like me logo Genes that share expression patterns with NOL4: view

Protein tissue co-expression partners for NOL4 Gene

- Elite partner

Primer Products

Orthologs for NOL4 Gene

This gene was present in the common ancestor of animals.

Orthologs for NOL4 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NOL4 35
  • 93.36 (n)
  • 97.18 (a)
NOL4 36
  • 97 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NOL4 35
  • 94.88 (n)
  • 97.18 (a)
NOL4 36
  • 97 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nol4 35
  • 89.68 (n)
  • 93.81 (a)
Nol4 16
Nol4 36
  • 92 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NOL4 35
  • 99.63 (n)
  • 100 (a)
NOL4 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nol4 35
  • 84.06 (n)
  • 87.78 (a)
oppossum
(Monodelphis domestica)
Mammalia NOL4 36
  • 93 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NOL4 36
  • 81 (a)
OneToOne
chicken
(Gallus gallus)
Aves NOL4 35
  • 88.3 (n)
  • 93.64 (a)
NOL4 36
  • 79 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NOL4 36
  • 87 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nol4 35
  • 80.75 (n)
  • 85.47 (a)
fruit fly
(Drosophila melanogaster)
Insecta BG:DS01523.1 37
  • 75 (a)
CG17341 36
  • 24 (a)
OneToOne
Species with no ortholog for NOL4:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NOL4 Gene

ENSEMBL:
Gene Tree for NOL4 (if available)
TreeFam:
Gene Tree for NOL4 (if available)

Paralogs for NOL4 Gene

Paralogs for NOL4 Gene

(2) SIMAP similar genes for NOL4 Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with NOL4: view

Variants for NOL4 Gene

Sequence variations from dbSNP and Humsavar for NOL4 Gene

SNP ID Clin Chr 18 pos Sequence Context AA Info Type
rs17179 -- 33,977,931(-) GTCTC(C/G)AAGGC intron-variant
rs1573351 -- 33,983,753(+) TCACT(C/T)TTCCC intron-variant
rs1573352 -- 34,019,294(-) TTCCA(A/G)AATTT intron-variant
rs1597849 -- 33,973,104(-) agcag(C/G)agagt intron-variant
rs1597850 -- 33,934,407(+) AGGCA(C/T)TAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOL4 Gene

Variant ID Type Subtype PubMed ID
esv2668525 CNV Deletion 23128226
nsv458048 CNV Loss 19166990
nsv909531 CNV Gain 21882294
nsv909532 CNV Loss 21882294
esv267479 CNV Insertion 20981092
nsv132109 CNV Insertion 16902084
esv2670669 CNV Deletion 23128226
nsv458049 CNV Loss 19166990
nsv909533 CNV Loss 21882294
nsv909534 CNV Loss 21882294
nsv470415 CNV Gain 18288195
nsv909535 CNV Gain 21882294
esv2019786 CNV Deletion 18987734
esv3222 CNV Deletion 18987735
esv2716952 CNV Deletion 23290073
esv1010069 CNV Deletion 20482838
dgv58n6 CNV Loss 16902084
esv1694854 CNV Deletion 17803354
nsv519676 CNV Gain 19592680
esv2663858 CNV Deletion 23128226

Variation tolerance for NOL4 Gene

Residual Variation Intolerance Score: 6.49% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.02; 20.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOL4 Gene

HapMap Linkage Disequilibrium report
NOL4

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NOL4 Gene

Disorders for NOL4 Gene

Relevant External Links for NOL4

Genetic Association Database (GAD)
NOL4
Human Genome Epidemiology (HuGE) Navigator
NOL4
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOL4

No disorders were found for NOL4 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOL4 Gene

Publications for NOL4 Gene

  1. NOLP: identification of a novel human nucleolar protein and determination of sequence requirements for its nucleolar localization. (PMID: 9813152) Ueki N. … Muramatsu M.-A. (Biochem. Biophys. Res. Commun. 1998) 2 3 4 67
  2. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3
  3. Validation of nucleolar protein 4 as a novel methylated tumor suppressor gene in head and neck cancer. (PMID: 24337411) Demokan S. … Califano J.A. (Oncol. Rep. 2014) 3
  4. Protein interaction network of alternatively spliced isoforms from brain links genetic risk factors for autism. (PMID: 24722188) Corominas R. … Iakoucheva L.M. (Nat. Commun. 2014) 3
  5. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3

Products for NOL4 Gene

Sources for NOL4 Gene

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