NOL4 Gene
protein-coding GIFtS : 55
GCID: GC18 M031465
nucleolar protein 4
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Aliasesfor NOL4 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section This gene clusters with an RNA geneSubcategory (RNA class): lncRNAQuality score for the ORGUL clustered with this gene is 3 Aliases Nucleolar Protein 4 1 2 Cancer/Testis Antigen 1252 NOLP1 2 3 Nucleolar Localized Protein2 CT1251 2 Nucleolar-Localized Protein3 HRIHFB22551
External Ids: HGNC: 7870 1 Entrez Gene: 8715 2 Ensembl: ENSG00000101746 7 OMIM: 603577 5 UniProtKB: O94818 3 ORGUL members: NONCODE:n410195
Export aliases for NOL4 gene to outside databases Previous GC identifers: GC18M031251 GC18M029684 GC18M029686 GC18M028290
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Summariesfor NOL4 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Gene Wiki entry for NOL4
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Genomic Viewsfor NOL4 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000018.9 NC_018929.1 NT_010966.14 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NOL4 gene promoter: Max1 Nkx2-5 MIF-1 POU6F1 (c2) S8 HSF2 Meis-1a Pax-4a c-Myc Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for NOL4 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NOL4
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 18q12 Ensembl cytogenetic band: 18q12.1 HGNC cytogenetic band: 18q12 NOL4 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 18 GeneLoc Exon Structure
GeneLoc location for GC18M031465: view genomic region
(about GC identifiers )
Start:
31,431,064 bp from pter
End:
31,804,916 bp from pter
Size:
373,853 bases
Orientation:
minus strand
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Proteinsfor NOL4 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NOL4_HUMAN, O94818 (See
protein sequence )Recommended Name: Nucleolar protein 4 Size : 638 amino acids; 71357 Da
Subcellular location : Nucleus, nucleolus
Sequence caution : Sequence=AAH00313.1; Type=Miscellaneous discrepancy; Note=Contaminating sequence. Sequence of unknownorigin in the N-terminal part; Sequence=BAA34576.1; Type=Erroneous termination; Positions=38; Note=Translated as Gln; Sequence=BAA34576.1; Type=Frameshift; Positions=82;
Secondary accessions : B4DSQ0 B7Z3Z7 F5H1E3 Q6IBS2 Q9BWF1Alternative splicing : 4 isoforms : O94818-1 O94818-2 O94818-3 O94818-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for NOL4: NX_O94818 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O94818 NOL4 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins (5 alternative transcripts):
NP_001185475.1 NP_001185476.1 NP_001185477.1 NP_001185478.1 NP_003778.2 ENSEMBL proteins: ENSP00000261592 ENSP00000445733 ENSP00000464704 ENSP00000465450 ENSP00000443472 ENSP00000467629 ENSP00000467015 ENSP00000467326 ENSP00000464790 ENSP00000269185 ENSP00000438190 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005730 nucleolus
IEA --
NOL4 for ontologies About GeneDecksing NOL4 Antibody Products: Assay Products for NOL4:
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Protein
Domains / Familiesfor NOL4 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NOL4 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry O94818 ProtoNet protein and cluster: O94818
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Functionfor NOL4 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: Genatlas biochemistry entry for NOL4 : nucleolar protein 4 Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): NOL4 (NM_001198547 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NOL4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOL4
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOL4
Gene Ontology (GO): 1 molecular function term (GO ID links to tree view) : About this table
NOL4 for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for NOL4 :
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Pathways & Interactionsfor NOL4 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NOL4 STRING Interaction
Network Preview (showing 5 interactants - click image to see more details)5/9 Interacting proteins for NOL4 (O94818 2 , 3 ENSP00000261592 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table
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Drugs & Compoundsfor NOL4 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NOL4 Search CenterWatch for drugs/clinical trials and news about NOL4
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Transcriptsfor NOL4 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NOL4 gene (5 alternative transcripts): NM_001198546.1 NM_001198547.1 NM_001198548.1 NM_001198549.1 NM_003787.4 Unigene Cluster for NOL4:
Nucleolar protein 4 Hs.514795 [show with all ESTs ] Unigene Representative Sequence: NM_003787 16 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000261592 (uc010xbs.2 uc002kxr.4 uc010xbt.2 uc010dmh.3 uc010dmi.3 uc010xbu.2 )ENST00000535384 (uc010xbv.1 ) ENST00000586314 ENST00000589544 ENST00000538587 ENST00000590712 ENST00000586553 ENST00000588280 ENST00000591917 ENST00000587971 ENST00000587953 ENST00000586309 ENST00000590846 ENST00000588355 ENST00000269185 (uc002kxt.4 )ENST00000535475 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 (see all 8 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 (see all 2 )OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector (see all 5 ): NOL4 (NM_001198547 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NOL4 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOL4
Additional cDNA sequence: AB015339.1 AB017800.1 AK091463.1 AK296539.1 AK297185.1 AK299850.1 AK312562.1 BC000313.2 BT006763.1 CR456730.1 NR_036752.1
9 DOTS entries : DT.412647 DT.121090082
DT.100708122 DT.91712623 DT.100746870 DT.121084267 DT.40127323 DT.91712622 DT.100746869 24/89 AceView cDNA sequences (see all 89 ):
BM505405 CA865772 AV704251 BM312832 BP370892 T16121 BM973283 AA326094 AI243344 BE252468 BX505305 BP369540 BX281610 AI468245 BE793687 BI830078 AA430033 AW248833 CA865522 H09988 CR608782 BF219730 BI755747 BX424616 GeneLoc Exon Structure 3 Alternative Splicing Database (ASD) splice patterns (SP) for NOL4 About this scheme ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 SP1 :     -     -                     SP2 :                     -         SP3 :     -     -             -   -      
ECgene alternative splicing isoforms for NOL4
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Expression for NOL4 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NOL4 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: TAAAATTTAT
About this image NOL4 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See NOL4 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NOL4 SOURCE GeneReport for Unigene cluster: Hs.514795 UniProtKB/Swiss-Prot: NOL4_HUMAN, O94818 Tissue specificity : Expressed predominantly in fetal brain, adult brain and testis SABiosciences Custom PCR Arrays for NOL4 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NOL4Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NOL4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NOL4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NOL4 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOL4
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Orthologsfor NOL4 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NOL4 gene from 4/13 species (see all 13 ) About this table
ENSEMBL Gene Tree for NOL4 (if available)TreeFam Gene Tree for NOL4 (if available)
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Paralogsfor NOL4 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for NOL4 gene C20orf112 2 2 SIMAP similar genes for NOL4 using alignment to 7 protein entries: NOL4_HUMAN (see all proteins ):C20orf112 LOC284804
NOL4 for paralogs About GeneDecksing
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Genomic Variantsfor NOL4 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 18 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NOL4 (31431064 - 31681064 bp, first 250kb of NOL4)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 6 variations for NOL4 1 CNV : 88781 5 Indels : 45641 11941 26028 42989 11940
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NOL4
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Disorders
/ Diseasesfor NOL4 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NOL4 for disorders About GeneDecksing
OMIM gene information: 603577
OMIM disorders : --3 diseases for NOL4 : About MalaCards major depressive disorder cervical cancer cervicitis Human Genome Epidemiology (HuGE) Navigator: NOL4 (1 document)Export disorders for NOL4 gene to outside databases
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Publicationsfor NOL4 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NOL4 gene, integrated from 9 sources (see all 17 ): (articles sorted by number of sources associating them with NOL4) Utopia : connect your pdf to the dynamic world of online information
NOLP: identification of a novel human nucleolar protein and determination of sequence requirements for its nucleolar localization. (PubMed id 9813152) 1 , 2 , 3 Ueki N....Muramatsu M.-A. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Selection system for genes encoding nuclear-targeted proteins. (PubMed id 9853615) 1 , 2 Ueki N.... Muramatsu M.-A. (1998) Genetic variants associated with breast size also infl uence breast cancer risk. (PubMed id 22747683) 1 Eriksson N....Tung J.Y. (2012) A directed protein interaction network for investigat ing intracellular signal transduction. (PubMed id 21900206) 1 Vinayagam A....Wanker E.E. (2011) Proliferating cell nuclear antigen (PCNA)-associated KIAA0101/PAF15 protein is a cell cycle-regulated anaphase-promoting complex/cyc losome substrate. (PubMed id 21628590) 1 Emanuele M.J....Elledge S.J. (2011) Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PubMed id 20379614) 1 Rose J.E....Uhl G.R. (2010) A genomewide association study of citalopram response in major depressive disorder. (PubMed id 19846067) 1 Garriock H.A....Hamilton S.P. (2010) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006)
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External Searches for NOL4 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NOL4 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NOL4 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NOL4 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NOL4 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NOL4 gene: Search GeneIP for patents involving NOL4 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NOL4 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NOL4 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NOL4 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NOL4 OriGene Protein Over-expression Lysate for NOL4 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NOL4 OriGene 3'-UTR Clone for NOL4 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOL4 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for NOL4 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NOL4 OriGene Custom Protein Services for NOL4 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NOL4 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NOL4 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NOL4 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NOL4 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NOL4 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NOL4
Search Tocris compounds for NOL4
NOL4 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOL4
Search ThermoFisher Antibodies for NOL4
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOL4
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Aliases for NOL4
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Disorders / Diseases for NOL4
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Expression for NOL4
Function for NOL4
Genomic Views for NOL4
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Pathways / Interactions for NOL4
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