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Aliases & Descriptions for NOG
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| SYM1 2, 5 | | SYNS1 2, 5 | | noggin 2 |
| | | Descriptions |
|---|
| symphalangism 1 (proximal) 1, 2 | | synostoses (multiple) syndrome 1 1 |
|
| | Search outside databases for aliases for NOG genePrevious GC identifers: GC17P054405 GC17P057152 GC17P055013 GC17P055146 GC17P055147 |
Summaries for NOG(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NOG: The secreted polypeptide, encoded by this gene, binds and inactivates members of the transforming growth factor-beta (TGF-beta) superfamily signaling proteins, such as bone morphogenetic protein-4 (BMP4). By diffusing through extracellular matrices more efficiently than members of the TGF-beta superfamily, this protein may have a principal role in creating morphogenic gradients. The protein appears to have pleiotropic effect, both early in development as well as in later stages. It was originally isolated from Xenopus based on its ability to restore normal dorsal-ventral body axis in embryos that had been artificially ventralized by UV treatment. The results of the mouse knockout of the ortholog suggest that it is involved in numerous developmental processes, such as neural tube fusion and joint formation. Recently, several dominant human NOG mutations in unrelated families with proximal symphalangism (SYM1) and multiple synostoses syndrome (SYNS1) were identified; both SYM1 and SYNS1 have multiple joint fusion as their principal feature, and map to the same region (17q22) as this gene. All of these mutations altered evolutionarily conserved amino acid residues. The amino acid sequence of this human gene is highly homologous to that of Xenopus, rat and mouse. [provided by RefSeq] UniProtKB/Swiss-Prot: NOGG_HUMAN, Q13253Function: Essential for cartilage morphogenesis and joint formation. Inhibitor of bone morphogenetic proteins (BMP) signaling which is required for growth and patterning of the neural tube and somite (By similarity)Gene Wiki entry for NOG (Noggin) |
Genomic Location for NOG
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NOG gene 
Entrez Gene cytogenetic band: 17q21-q22 Ensembl cytogenetic band: 17q22 HGNC cytogenetic band: 17q22NOG Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P052026:
(about GC identifiers)
Start:
|
52,026,274 bp from pter |
End:
|
52,027,546 bp from pter |
Size:
|
1,273 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010783.14
| Proteins for NOG
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: NOGG_HUMAN, Q13253 (See
protein sequence)Recommended Name: Noggin precursor Size: 232 amino acids; 25774 Da
Subunit: Homodimer; disulfide-linked (By similarity)
Subcellular location: Secreted
PDB structures from and Proteopedia :1M4U (3D)
 REFSEQ proteins: NP_005441.1
ENSEMBL proteins: ENSP00000328181
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
2 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for NOG: Assays for NOG: | Protein
Domains/ Families for NOG(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry Q13253
ProtoNet protein and cluster: Q13253 1 Blocks protein family: IPB008717 Noggin
UniProtKB/Swiss-Prot: NOGG_HUMAN, Q13253Similarity: Belongs to the noggin family | Gene Function for NOG
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005450
Applied Biosystems Silencer® siRNAs for NOG
Sigma-Aldrich siRNA and siRNA Panels for NOG  Sigma-Aldrich shRNA for NOG  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_005450                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005450                                  untagged cDNA clone in CMV expression vector: NM_005450 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_005450
UniProtKB/Swiss-Prot: NOGG_HUMAN, Q13253Function: Essential for cartilage morphogenesis and joint formation. Inhibitor of bone morphogenetic proteins (BMP) signaling which is required for growth and patterning of the neural tube and somite (By similarity)Genatlas biochemistry entry for NOG:noggin,Spemann organizer,binding and inactivating BMP4 and other TGFB family members,involved in the joint formation and in skeletogenesis15/21 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nog) (see all 21
):
2 Gene Ontology (GO) molecular function terms (links to tree view): About this table | Pathways & Interactions for NOG
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
| 3 Sigma-Aldrich "Your Favorite Gene" Pathways for NOG (Your Favorite Gene powered by Ingenuity) 
Gene Network CentralTM Interacting Genes and Proteins Network for NOG 
5/88 Interacting proteins for NOG (Q132531 ENSP000003281813) via UniProtKB, MINT, and/or STRING (see all 88
)About this table
5/24 Gene Ontology (GO) biological process terms (links to tree view) (see all 24
): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0001649 | osteoblast differentiation |
IEA | -- | | GO:0001657 | ureteric bud development |
IEA | -- | | GO:0001837 | epithelial to mesenchymal transition |
IEA | -- | | GO:0007389 | pattern specification process |
IEA | -- | | GO:0007420 | brain development |
IEA | -- | About this table
|
Drugs & Compounds for NOG(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|
Browse Tocris compounds for NOG 7 Novoseek chemical compound relationships for NOG gene
About this table
|
Transcripts for NOG(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_005450
Sigma-Aldrich siRNA and siRNA Panels for NOG  Sigma-Aldrich shRNA for NOG  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_005450 REFSEQ mRNAs for NOG gene: NM_005450.4
Applied Biosystems TaqMan ® Gene Expression Assays: NM_005450               OriGene GFP tagged cDNA clone in CMV expression vector: NM_005450                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_005450                                  untagged cDNA clone in CMV expression vector: NM_005450  Additional cDNA sequence: AK314080.1 BC034027.1 CR611456.1 1 DOTS entry: DT.75174211 12 AceView cDNA sequences:NM_005450 AI634984 BX283192 CR611456 AW295785 BQ710008 BC034027 AA045124 AW205295 AL551507 BG610858 AL575177
highest scoring ESTs for NOG:BC034027 BX283192 AI634984 AL551507 AW205295 AW295785 BG610858 BQ710008 CR611456 NM_005450 Unigene Cluster for NOG: Noggin Hs.248201 [show with all ESTs]Unigene Representative Sequence: NM_005450
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000332822
|
Expression for NOG
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NOG expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NOG
1 / 2 / 3 2 probe-sets matching NOG gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GCGAAGCAGG
SOURCE GeneReport for Unigene cluster: Hs.248201
|
Orthologs for NOG
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NOG gene from 5/7 species (see all 7
)
About this table Species with no ortholog for NOG
ENSEMBL Gene Tree for NOG | Paralogs for NOG(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| -- |
SNPs/Variants for NOG(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NOG (up to first 250kb)
|
Disorders & Mutations for NOG
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 602991 disorders: 185800 186500 186570 184460 611377 UniProtKB/Swiss-Prot: NOGG_HUMAN, Q13253
Defects in NOG are a cause of symphalangism proximal syndrome (SYM1) [MIM:185800]. SYM1 is characterized by the hereditary absence of the proximal interphalangeal (PIP) joints (Cushing symphalangism). Severity of PIP joint involvement diminishes towards the radial side. Distal interphalangeal joints are less frequently involved and metacarpophalangeal joints are rarely affected whereas carpal bone malformation and fusion are common. In the lower extremities, tarsal bone coalition is common. Conducive hearing loss is seen and is due to fusion of the stapes to the petrous part of the temporal bone Defects in NOG are the cause of multiple synostoses syndrome 1 (SYNS1) [MIM:186500]; also known as synostoses, multiple, with brachydactyly/symphalangism-brachydactyly syndrome. SYNS1 is characterized by tubular-shaped (hemicylindrical) nose with lack of alar flare, otosclerotic deafness, and multiple progressive joint fusions commencing in the hand. The joint fusions are progressive, commencing in the fifth proximal interphalangeal joint in early childhood (or at birth in some individuals) and progressing in an ulnar-to-radial and proximal-to-distal direction. With increasing age, ankylosis of other joints, including the cervical vertebrae, hips, and humeroradial joints, develop Defects in NOG are the cause of tarsal-carpal coalition syndrome (TCC) [MIM:186570]. TCC is an autosomal dominant disorder characterized by fusion of the carpals, tarsals and phalanges, short first metacarpals causing brachydactyly, and humeroradial fusion. TCC is allelic to SYM1, and different mutations in NOG can result in either TCC or SYM1 in different families Defects in NOG are a cause of stapes ankylosis with broad thumb and toes [MIM:184460]. Stapes ankylosis with broad thumb and toes is a congenital autosomal dominant disorder that includes hyperopia, a hemicylindrical nose, broad thumbs, great toes, and other minor skeletal anomalies but lacked carpal and tarsal fusion and symphalangism Defects in NOG are the cause of brachydactyly type B2 (BDB2) [MIM:611377]. BDB2 is a subtype of brachydactyly characterized by hypoplasia/aplasia of distal phalanges in combination with distal symphalangism, fusion of carpal/tarsal bones, and partial cutaneous syndactyly10/24 Novoseek disease relationships for NOG gene (see all 24
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| symphalangism, proximal |
93.90 |
16 |
11846737 (2), 11545688 (1), 7557985 (1), 18096605 (1) (see all 11) |
| syns1 |
91.86 |
5 |
11562478 (2), 16151340 (1), 18440889 (1), 12089654 (1) |
| brachydactyly, type b |
78.55 |
2 |
18440889 (1), 11932993 (1) |
| fibrodysplasia ossificans progressiva |
78.52 |
8 |
12672843 (1), 18019378 (1), 19400542 (1), 11503156 (1) (see all 7) |
| synostosis |
68.86 |
10 |
18096605 (1), 18449926 (1), 15736221 (1), 17668388 (1) (see all 7) |
| conductive hearing loss |
66.73 |
3 |
18096605 (1), 18983945 (1), 15699718 (1) |
| craniosynostosis |
57.46 |
6 |
17437358 (2), 19182668 (1), 12687003 (1) |
| arthrodesis |
55.32 |
7 |
12621334 (2), 16353259 (1), 12955858 (1), 12089654 (1) (see all 6) |
| hyperopia |
45.76 |
3 |
12621334 (1), 18983945 (1), 12089654 (1) |
| osteolytic |
37.72 |
11 |
17200191 (2), 19111821 (2), 16750435 (1), 16995812 (1) (see all 6) |
About this table
Human Gene Mutation Database: NOG Genetic Association Database: NOG Human Genome Epidemiology Navigator: NOG (2 documents)
|
Medical News for NOG(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NOG (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/301 PubMed articles for NOG gene (see all 301
):- Identical mutations in NOG can cause either tarsal/carpal coalition syndrome or proximal symphalangism. (PubMed id 11545688)1, 2, 3, 4 Dixon M.E....Bamshad M. (2001)
- Identification of mammalian noggin and its expression in the adult nervous system. (PubMed id 7666191)1, 2, 3, 4 Valenzuela D.M....Yancopoulos G.D. (1995)
- Heterozygous mutations in the gene encoding noggin affect human joint morphogenesis. (PubMed id 10080184)1, 2, 3, 4 Gong Y....Warman M.L. (1999)
- Identification of a novel NOG gene mutation (P35S) in an Italian family with symphalangism. (PubMed id 11857750)1, 3, 4 Mangino M.... Dallapiccola B. (2002)
- Mutations of the NOG gene in individuals with proximal symphalangism and multiple synostosis syndrome. (PubMed id 11846737)1, 3, 4 Takahashi T.... Takada G. (2001)
- A new subtype of brachydactyly type B caused by point mutations in the bone morphogenetic protein antagonist NOGGIN. (PubMed id 17668388)1, 3, 4 Lehmann K.... Mundlos S. (2007)
- Autosomal dominant stapes ankylosis with broad thumbs and toes, hyperopia, and skeletal anomalies is caused by heterozygous nonsense and frameshift mutations in NOG, the gene encoding noggin. (PubMed id 12089654)1, 3, 4 Brown D.J.... Lesperance M.M. (2002)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- Evaluation of BMP4 and its specific inhibitor NOG as candidates in human neural tube defects (NTDs). (PubMed id 12404109)3, 6 Felder B....Koch M.C. (2002)
- Lack of noggin expression by cancer cells is a determinant of the osteoblast response in bone metastases. (PubMed id 17200191)1, 3 Schwaninger R....Cecchini M.G. (2007)
|
Search for NOG
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NOG
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NOG
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NOG(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NOG(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NOG:

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