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Aliases for NOC4L Gene

Aliases for NOC4L Gene

  • Nucleolar Complex Associated 4 Homolog 2 3 5
  • Nucleolar Complex-Associated Protein 4-Like Protein 3 4
  • NOC4 Protein Homolog 3 4
  • NOC4-Like Protein 3 4
  • Nucleolar Complex Associated 4 Homolog (S. Cerevisiae) 2
  • Nucleolar Complex Protein 4 Homolog 3
  • NET49 3
  • UTP19 3
  • NOC4 3

External Ids for NOC4L Gene

Previous GeneCards Identifiers for NOC4L Gene

  • GC12P131296
  • GC12P131194
  • GC12P132628
  • GC12P129514

Summaries for NOC4L Gene

GeneCards Summary for NOC4L Gene

NOC4L (Nucleolar Complex Associated 4 Homolog) is a Protein Coding gene. Among its related pathways are rRNA processing in the nucleus and cytosol and Gene Expression. GO annotations related to this gene include poly(A) RNA binding and binding.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOC4L Gene

Genomics for NOC4L Gene

Regulatory Elements for NOC4L Gene

Enhancers for NOC4L Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH12F132487 1.6 FANTOM5 Ensembl ENCODE 24.7 +354.9 354928 23.9 HDGF PKNOX1 ARNT CREB3L1 ZFP64 ARID4B SIN3A FEZF1 DMAP1 ZNF2 ZNF26 EP400NL ZNF891 FBRSL1 EP400 ZNF10 GOLGA3 NOC4L ENSG00000256875 ZNF84
GH12F131864 0.5 ENCODE 17.4 -279.0 -279042 1.2 ATF1 PKNOX1 ZNF133 SIN3A YBX1 PLRG1 RAD21 ZNF155 ZNF302 SMARCC2 EP400 GOLGA3 SFSWAP DDX51 ENSG00000255933 FBRSL1 NOC4L EP400NL RNU6-1017P MMP17
GH12F133079 1.1 ENCODE 15.9 +936.2 936201 2.8 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A FEZF1 NOC4L EP400NL ZNF891 ZNF140 ZNF26 RPS11P5 PIR46776
GH12F131948 0.2 ENCODE 14.1 -194.5 -194467 3.2 PKNOX1 CREB3L1 ARID4B SIN3A ZNF143 ZNF207 FOS KLF13 SP3 SP5 NOC4L ENSG00000255933 EP400 RPS11P5 EP400NL DDX51 PUS1 GC12P131952
GH12F131237 0.7 Ensembl ENCODE 14.1 -907.1 -907061 0.7 BCOR HDAC1 ETV1 MAX ZBTB40 RFX5 GTF3C2 GATA3 POLR2A ADNP NOC4L ENSG00000255933 EP400 ENSG00000280217 LOC105370082
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NOC4L on UCSC Golden Path with GeneCards custom track

Promoters for NOC4L Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000439592 -222 2001 CREB3L1 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 YY1 CBX5 ZNF143

Genomic Location for NOC4L Gene

Chromosome:
12
Start:
132,144,422 bp from pter
End:
132,152,473 bp from pter
Size:
8,052 bases
Orientation:
Plus strand

Genomic View for NOC4L Gene

Genes around NOC4L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOC4L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOC4L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOC4L Gene

Proteins for NOC4L Gene

  • Protein details for NOC4L Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BVI4-NOC4L_HUMAN
    Recommended name:
    Nucleolar complex protein 4 homolog
    Protein Accession:
    Q9BVI4
    Secondary Accessions:
    • Q8N2S5
    • Q96I14

    Protein attributes for NOC4L Gene

    Size:
    516 amino acids
    Molecular mass:
    58468 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NOC4L Gene

Post-translational modifications for NOC4L Gene

  • Ubiquitination at Lys 138
  • Modification sites at PhosphoSitePlus

Other Protein References for NOC4L Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NOC4L Gene

Domains & Families for NOC4L Gene

Protein Domains for NOC4L Gene

Suggested Antigen Peptide Sequences for NOC4L Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BVI4

UniProtKB/Swiss-Prot:

NOC4L_HUMAN :
  • Belongs to the CBF/MAK21 family.
Family:
  • Belongs to the CBF/MAK21 family.
genes like me logo Genes that share domains with NOC4L: view

No data available for Gene Families for NOC4L Gene

Function for NOC4L Gene

Gene Ontology (GO) - Molecular Function for NOC4L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with NOC4L: view
genes like me logo Genes that share phenotypes with NOC4L: view

Animal Model Products

miRNA for NOC4L Gene

miRTarBase miRNAs that target NOC4L

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NOC4L Gene

Localization for NOC4L Gene

Subcellular locations from UniProtKB/Swiss-Prot for NOC4L Gene

Nucleus membrane; Multi-pass membrane protein. Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NOC4L Gene COMPARTMENTS Subcellular localization image for NOC4L gene
Compartment Confidence
nucleus 5
cytosol 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NOC4L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm TAS --
GO:0005730 nucleolus ISS,IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NOC4L: view

Pathways & Interactions for NOC4L Gene

genes like me logo Genes that share pathways with NOC4L: view

Gene Ontology (GO) - Biological Process for NOC4L Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA --
GO:0006364 rRNA processing TAS --
GO:0042254 ribosome biogenesis IEA --
genes like me logo Genes that share ontologies with NOC4L: view

No data available for SIGNOR curated interactions for NOC4L Gene

Transcripts for NOC4L Gene

Unigene Clusters for NOC4L Gene

Nucleolar complex associated 4 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOC4L Gene

ExUns: 1 ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13a · 13b ^ 14 ^ 15 ^ 16
SP1: - -
SP2: -
SP3:

Relevant External Links for NOC4L Gene

GeneLoc Exon Structure for
NOC4L
ECgene alternative splicing isoforms for
NOC4L

Expression for NOC4L Gene

mRNA expression in normal human tissues for NOC4L Gene

Protein differential expression in normal tissues from HIPED for NOC4L Gene

This gene is overexpressed in Bone (29.3) and Peripheral blood mononuclear cells (11.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NOC4L Gene



Protein tissue co-expression partners for NOC4L Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NOC4L Gene:

NOC4L

SOURCE GeneReport for Unigene cluster for NOC4L Gene:

Hs.558536
genes like me logo Genes that share expression patterns with NOC4L: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NOC4L Gene

Orthologs for NOC4L Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NOC4L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NOC4L 34
  • 98.65 (n)
cow
(Bos Taurus)
Mammalia NOC4L 34 35
  • 84.13 (n)
dog
(Canis familiaris)
Mammalia NOC4L 34 35
  • 82.04 (n)
mouse
(Mus musculus)
Mammalia Noc4l 34 16 35
  • 79.84 (n)
rat
(Rattus norvegicus)
Mammalia Noc4l 34
  • 79.52 (n)
oppossum
(Monodelphis domestica)
Mammalia NOC4L 35
  • 73 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 67 (a)
OneToMany
-- 35
  • 50 (a)
OneToMany
chicken
(Gallus gallus)
Aves EP400 34
  • 63.76 (n)
NOC4L 35
  • 58 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NOC4L 35
  • 54 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia Str.3697 34
African clawed frog
(Xenopus laevis)
Amphibia Xl.33955 34
zebrafish
(Danio rerio)
Actinopterygii noc4l 34 35
  • 57.96 (n)
sbcb534 34
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.381 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP001872 34
  • 47.44 (n)
fruit fly
(Drosophila melanogaster)
Insecta CG2875 34 35
  • 46.45 (n)
worm
(Caenorhabditis elegans)
Secernentea T20B12.3 35
  • 24 (a)
OneToOne
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0B10890g 34
  • 49.38 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ADR171C 34
  • 48.38 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NOC4 34 35 37
  • 43.82 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons EMB2762 34
  • 44.16 (n)
rice
(Oryza sativa)
Liliopsida Os04g0585300 34
  • 45.91 (n)
bread mold
(Neurospora crassa)
Ascomycetes NCU00501 34
  • 47.97 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPBC1604.06c 34
  • 41.57 (n)
Species where no ortholog for NOC4L was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NOC4L Gene

ENSEMBL:
Gene Tree for NOC4L (if available)
TreeFam:
Gene Tree for NOC4L (if available)

Paralogs for NOC4L Gene

No data available for Paralogs for NOC4L Gene

Variants for NOC4L Gene

Sequence variations from dbSNP and Humsavar for NOC4L Gene

SNP ID Clin Chr 12 pos Sequence Context AA Info Type
rs10794454 -- 132,146,277(+) GGCTT(C/T)TTCCA intron-variant, upstream-variant-2KB
rs10902498 -- 132,145,355(+) GTCCT(G/T)GGGTA intron-variant, upstream-variant-2KB
rs111232707 -- 132,144,799(+) CTAGG(C/G/T)AGGGG intron-variant, upstream-variant-2KB
rs111237387 -- 132,149,137(+) CACTC(A/C/G)TACCA intron-variant
rs111244500 -- 132,150,547(+) ACCAC(A/G)CCCCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NOC4L Gene

Variant ID Type Subtype PubMed ID
dgv103n21 CNV loss 19592680
dgv3014n54 CNV loss 21841781
dgv3015n54 CNV loss 21841781
dgv3016n54 CNV loss 21841781
dgv3017n54 CNV loss 21841781
dgv3018n54 CNV loss 21841781
dgv945e59 CNV duplication 20981092
esv2670820 CNV deletion 23128226
esv2746915 CNV deletion 23290073
esv2746916 CNV deletion 23290073
esv29137 CNV gain+loss 19812545
esv990728 CNV deletion 20482838
esv992467 CNV loss 20482838
nsv1041402 CNV gain 25217958
nsv1143581 CNV deletion 24896259
nsv428285 CNV gain 18775914
nsv470333 CNV loss 18288195
nsv509493 CNV insertion 20534489
nsv53069 CNV deletion 16902084
nsv560935 CNV loss 21841781
nsv826563 CNV gain 20364138
nsv944 CNV insertion 18451855
nsv952511 CNV deletion 24416366

Variation tolerance for NOC4L Gene

Residual Variation Intolerance Score: 98.4% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.66; 45.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NOC4L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOC4L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NOC4L Gene

Disorders for NOC4L Gene

Relevant External Links for NOC4L

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NOC4L

No disorders were found for NOC4L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOC4L Gene

Publications for NOC4L Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 64
  2. A Noc complex specifically involved in the formation and nuclear export of ribosomal 40 S subunits. (PMID: 12446671) Milkereit P. … Tschochner H. (J. Biol. Chem. 2003) 2 3 64
  3. Functional proteomic analysis of human nucleolus. (PMID: 12429849) Scherl A. … Diaz J.-J. (Mol. Biol. Cell 2002) 3 4 64
  4. Interactions of the Antiviral Factor Interferon Gamma-Inducible Protein 16 (IFI16) Mediate Immune Signaling and Herpes Simplex Virus-1 Immunosuppression. (PMID: 25693804) Diner B.A. … Cristea I.M. (Mol. Cell Proteomics 2015) 3 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for NOC4L Gene

Sources for NOC4L Gene

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