NOBOX Gene
protein-coding GIFtS : 46
GCID: GC07 M144094
NOBOX oogenesis homeobox
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Aliasesfor NOBOX gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases NOBOX Oogenesis Homeobox 1 2 OG2X2 OG21 2 TCAG_120422 POF52 5 Homeobox Protein NOBOX2 Og2x1 Newborn Ovary Homeobox-Encoding2 OG-22
Export aliases for NOBOX gene to outside databases Previous GC identifers: GC07M143533 GC07M143726 GC07M138173
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Summariesfor NOBOX gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for NOBOX : This homeobox gene encodes a transcription factor that is thought to play a role in oogenesis. In mice, it is essential for folliculogenesis and regulation of oocyte-specific genes. Defects in this gene result in premature ovarian failure type 5.(provided by RefSeq, May 2011) UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393 Function : Transcription factor which may play a role in oogenesis. Binds preferentially to the DNA sequences5'-TAATTG-3', 5'-TAGTTG-3' and 5'-TAATTA-3' (By similarity) Gene Wiki entry for NOBOX
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Genomic Viewsfor NOBOX gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000007.13 NC_018918.1 NT_007914.15 NT_079596.2 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NOBOX gene promoter: C/EBPbeta FOXF2 GATA-3 HNF-1A AREB6 POU2F1 POU2F1a HNF-1 Pax-4a Other transcription factors Search SABiosciences Chromatin IP Primers for NOBOX Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NOBOX
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 7q35 Ensembl cytogenetic band: 7q35 HGNC cytogenetic band: 7q35 NOBOX Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 7 GeneLoc Exon Structure
GeneLoc location for GC07M144094: view genomic region
(about GC identifiers )
Start:
144,094,333 bp from pter
End:
144,107,320 bp from pter
Size:
12,988 bases
Orientation:
minus strand
1 alternative location : Chr 7-,CRA_TCAG 143,432,585-143,439,039
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Proteinsfor NOBOX gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393 (See
protein sequence )Recommended Name: Homeobox protein NOBOX Size : 691 amino acids; 73906 Da
Subcellular location : Nucleus (By similarity)
Sequence caution : Sequence=AAC12957.1; Type=Erroneous gene model prediction;
Secondary accessions : A6NCD3 A8MZN5Alternative splicing : 2 isoforms : O60393-1 O60393-2 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for NOBOX: NX_O60393 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_O60393 NOBOX Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001073882.3 ENSEMBL proteins: ENSP00000419565 ENSP00000419457 ENSP00000450769 ENSP00000223140 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
NOBOX for ontologies About GeneDecksing NOBOX Antibody Products: Assay Products for NOBOX:
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Protein
Domains / Familiesfor NOBOX gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NOBOX for domains About GeneDecksing 2 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O60393 ProtoNet protein and cluster: O60393
UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393 Similarity : Contains 1 homeobox DNA-binding domain
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Functionfor NOBOX gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393 Function : Transcription factor which may play a role in oogenesis. Binds preferentially to the DNA sequences5'-TAATTG-3', 5'-TAGTTG-3' and 5'-TAATTA-3' (By similarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOX (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOXOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NOBOX (NM_001080413 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NOBOX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOBOX
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOBOX
Gene Ontology (GO): 4 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0000976 transcription regulatory region sequence-specific DNA binding
-- -- GO:0003677 DNA binding
-- -- GO:0003700 sequence-specific DNA binding transcription factor activity
IEA -- GO:0043565 sequence-specific DNA binding
IEA --
NOBOX for ontologies About GeneDecksing 1 GenomeRNAi human phenotype for NOBOX :Animal Models: Mouse knock-out Nobox tm1Rajk for NOBOX 2 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nobox) :
NOBOX for phenotypes About GeneDecksing
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Pathways & Interactionsfor NOBOX gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NOBOX Gene Ontology (GO): 5 biological process terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0001541 ovarian follicle development
IEA -- GO:0006351 transcription, DNA-dependent
IEA -- GO:0030154 cell differentiation
IEA -- GO:0045944 positive regulation of transcription from RNA polymerase II promoter
IEA -- GO:0048477 oogenesis
IEA --
NOBOX for ontologies About GeneDecksing
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Drugs & Compoundsfor NOBOX gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NOBOX Search CenterWatch for drugs/clinical trials and news about NOBOX
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Transcriptsfor NOBOX gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NOBOX gene: NM_001080413.3 Unigene Cluster for NOBOX:
NOBOX oogenesis homeobox Hs.558628 [show with all ESTs ] Unigene Representative Sequence: NM_001080413 4 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000483238 ENST00000467773 (uc022aoj.1 ) ENST00000555556 ENST00000223140 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOX (see all 2 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOXOriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NOBOX (NM_001080413 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NOBOX Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOBOX
2 DOTS entries : DT.121116056 DT.121116057
GeneLoc Exon Structure
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Expression for NOBOX gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NOBOX expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CTGCTGACTT
About this image NOBOX expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See NOBOX Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NOBOX SOURCE GeneReport for Unigene cluster: Hs.558628 UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393 Tissue specificity : Expressed in ovaries, testes and pancreas. Expressed within all stages of the adult femalegermline, from primordial follicles through to MII oocytes SABiosciences Custom PCR Arrays for NOBOX Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NOBOXBrowse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NOBOX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NOBOX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NOBOX In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOBOX
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Orthologsfor NOBOX gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of chordates.
Orthologs for NOBOX gene from 5/10 species (see all 10 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
mouse (Mus musculus)
Mammalia
Nobox1 , 5
NOBOX oogenesis homeobox1, 5
70.27(n) 1 57.37(a) 1
 
6 (21.17 cM) 5 18291 1 NM_130869.3 1 NP_570939.1 1 43303674 5
chicken (Gallus gallus)
Aves
F1NPY3_CHICK6
Uncharacterized protein
44(a)
1 ↔ 1
1(76775432-76779851)
lizard (Anolis carolinensis)
Reptilia
NOBOX6
--
34(a)
1 ↔ 1
5(82096934-82107253)
African clawed frog (Xenopus laevis)
Amphibia
hbox10-A2
homeobox-containing protein
77.15(n)
 
L36805.1
zebrafish (Danio rerio)
Actinopterygii
wu:fi69e096
wu:fi69e09
22(a)
1 ↔ 1
19(44793343-44805126)
ENSEMBL Gene Tree for NOBOX (if available)TreeFam Gene Tree for NOBOX (if available)
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Paralogsfor NOBOX gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section --
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Genomic Variantsfor NOBOX gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 7 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NOBOX (144094333 - 144107320 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 3 variations for NOBOX 2 CNVs : 4573 3708 1 Inversion : 37284 Human Gene Mutation Database (HGMD) : NOBOX SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NOBOX
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Disorders
/ Diseasesfor NOBOX gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NOBOX for disorders About GeneDecksing OMIM gene information: 610934 OMIM disorders : 611548 UniProtKB/Swiss-Prot: NOBOX_HUMAN, O60393
Defects in NOBOX are the cause of premature ovarian failure type 5 (POF5) [MIM:611548]. An ovarian disorder defined as the cessation of ovarian function under the age of 40 years. It is characterized by oligomenorrhea or amenorrhea, in the presence of elevated levels of serum gonadotropins and low estradiol 5 diseases for NOBOX : About MalaCards premature ovarian failure premature ovarian failure 5 oophoritis ovarian cyst amenorrhea 1 disease from the University of Copenhagen DISEASES database for NOBOX :Premature ovarian failure Human Genome Epidemiology (HuGE) Navigator: NOBOX (3 documents) Export disorders for NOBOX gene to outside databases
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Publicationsfor NOBOX gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NOBOX gene, integrated from 9 sources (see all 14 ): (articles sorted by number of sources associating them with NOBOX) Utopia : connect your pdf to the dynamic world of online information
cDNA cloning and expression of the human NOBOX gene in oocytes and ovarian follicles. (PubMed id 16597639) 1 , 2 , 3 Huntriss J.... Picton H.M. (2006) Novel NOBOX loss-of-function mutations account for 6.2% of cases in a large primary ovarian insufficiency cohort. (PubMed id 21837770) 1 , 2 Bouilly J.... Binart N. (2011) NOBOX homeobox mutation causes premature ovarian failure. (PubMed id 17701902) 1 , 2 Qin Y.... Rajkovic A. (2007) The DNA sequence of human chromosome 7. (PubMed id 12853948) 1 , 2 Hillier L.W.... Wilson R.K. (2003) Nobox is a homeobox-encoding gene preferentially expressed in primordial and growing oocytes. (PubMed id 11804785) 1 , 3 Suzumori N....Rajkovic A. (2002) Clinical, biological and genetic analysis of prepuber tal isolated ovarian cyst in 11 girls. (PubMed id 20593028) 1 Brauner R....McElreavey K. (2010) Premature ovarian failure and gene polymorphisms. (PubMed id 19610175) 1 van Dooren M.F....Oldenburg R.A. (2009) A genome-wide linkage scan in a Dutch family identifi es a premature ovarian failure susceptibility locus. (PubMed id 18689850) 1 Oldenburg R.A....Bertoli-Avella A.M. (2008) A 12Mb deletion at 7q33-q35 associated with autism sp ectrum disorders and primary amenorrhea. (PubMed id 18675947) 1 Rossi E....Zuffardi O. (2008) Mutation analysis of NOBOX homeodomain in chinese women with premature ovarian failure. (PubMed id 18930203) 1 Qin Y....Chen Z.J. (2008)
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External Searches for NOBOX gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NOBOX gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NOBOX gene
(According to HUGE )
About This Section --
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Specialized Databases showing NOBOX gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NOBOX Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NOBOX gene: Search GeneIP for patents involving NOBOX GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NOBOX gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NOBOX OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NOBOX OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NOBOX OriGene Protein Over-expression Lysate for NOBOX Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NOBOX Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOX OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NOBOX Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NOBOX OriGene Custom Protein Services for NOBOX OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NOBOX QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NOBOX QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NOBOX QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NOBOX QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NOBOX QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NOBOX
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NOBOX Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NOBOX
Search ThermoFisher Antibodies for NOBOX
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NOBOX
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