Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NNT-AS1 Gene

Subcategory (RNA class) for NNT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NNT-AS1 Gene

  • NNT Antisense RNA 1 2 3 5

External Ids for NNT-AS1 Gene

Summaries for NNT-AS1 Gene

GeneCards Summary for NNT-AS1 Gene

NNT-AS1 (NNT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NNT-AS1 Gene

Genomics for NNT-AS1 Gene

Regulatory Elements for NNT-AS1 Gene

Enhancers for NNT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05F043771 1.5 FANTOM5 Ensembl ENCODE 12.3 -169.9 -169914 2.7 ATF1 ARNT ZNF766 ELK1 FOS ZNF518A CREB3 MEF2D MAFF SMARCA4 ZNF131 NNT-AS1 C5orf34 NNT ENSG00000249276 RPL29P12
GH05F043601 1.1 ENCODE 14.8 +0.2 202 3.6 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 SP3 NFYC ZNF131 NNT-AS1 NNT C5orf34 CCL28
GH05F043554 1.1 ENCODE 12.1 +46.9 46856 3.2 ARNT CREB3L1 ARID4B SIN3A DMAP1 ZNF2 ZNF207 ZNF143 KLF13 ZNF263 NNT ENSG00000248240 EEF1A1P19 NNT-AS1 RPL29P12 ENSG00000249492 LOC153684 FGF10-AS1 ENSG00000272382 ANXA2R
GH05F043635 0.4 ENCODE 25.1 -32.5 -32489 0.9 HLF NNT-AS1 NNT GC05M043668
GH05F043631 0.8 ENCODE 11.6 -28.3 -28254 0.2 HDGF CTCF PKNOX1 MAX RAD21 YY1 RFX5 ZNF664 POLR2A ZNF143 NNT NNT-AS1 GC05M043668
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NNT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

Genomic Location for NNT-AS1 Gene

43,571,594 bp from pter
43,603,230 bp from pter
31,637 bases
Minus strand

Genomic View for NNT-AS1 Gene

Genes around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NNT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NNT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NNT-AS1 Gene

Proteins for NNT-AS1 Gene

Post-translational modifications for NNT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NNT-AS1 Gene

Domains & Families for NNT-AS1 Gene

Gene Families for NNT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NNT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NNT-AS1 Gene

Function for NNT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NNT-AS1 Gene

Localization for NNT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NNT-AS1 Gene

Pathways & Interactions for NNT-AS1 Gene

SuperPathways for NNT-AS1 Gene

No Data Available

Interacting Proteins for NNT-AS1 Gene

Gene Ontology (GO) - Biological Process for NNT-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NNT-AS1 Gene

Transcripts for NNT-AS1 Gene

mRNA/cDNA for NNT-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NNT-AS1 Gene

No ASD Table

Relevant External Links for NNT-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NNT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NNT-AS1 Gene

genes like me logo Genes that share expression patterns with NNT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NNT-AS1 Gene

Orthologs for NNT-AS1 Gene

Evolution for NNT-AS1 Gene

Gene Tree for NNT-AS1 (if available)
Gene Tree for NNT-AS1 (if available)

No data available for Orthologs for NNT-AS1 Gene

Paralogs for NNT-AS1 Gene

No data available for Paralogs for NNT-AS1 Gene

Variants for NNT-AS1 Gene

Sequence variations from dbSNP and Humsavar for NNT-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs10044355 -- 43,592,914(+) TCTGA(A/C)TGCCT intron-variant
rs10044400 -- 43,592,916(+) TGACT(G/T)CCTAA intron-variant
rs10055616 -- 43,594,141(+) TCCGA(G/T)TTATT intron-variant
rs10059993 -- 43,598,250(+) TGGTA(A/G)AATAA intron-variant
rs10065689 -- 43,604,156(+) GCTGG(C/T)ATGTC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NNT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671038 CNV deletion 23128226
esv3604904 CNV gain 21293372
esv3604909 CNV loss 21293372
nsv830275 CNV gain 17160897
nsv980640 CNV duplication 23825009

Relevant External Links for NNT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NNT-AS1 Gene

Disorders for NNT-AS1 Gene

Relevant External Links for NNT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NNT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NNT-AS1 Gene

Publications for NNT-AS1 Gene

  1. Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo. (PMID: 27966450) Wang Q. … Feng G. (Oncotarget 2016) 2 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NNT-AS1 Gene

Sources for NNT-AS1 Gene

Loading form....