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Aliases for NNT-AS1 Gene

Subcategory (RNA class) for NNT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NNT-AS1 Gene

  • NNT Antisense RNA 1 2 3 5

External Ids for NNT-AS1 Gene

Summaries for NNT-AS1 Gene

GeneCards Summary for NNT-AS1 Gene

NNT-AS1 (NNT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NNT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NNT-AS1 Gene

Genomics for NNT-AS1 Gene

Regulatory Elements for NNT-AS1 Gene

Enhancers for NNT-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH05H043771 1.7 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -169.9 -169914 2 ATF1 ARNT ZNF766 ELK1 FOS ATF7 CAVIN1 ZNF518A ZNF592 MEF2D TMEM267 ZNF131 NNT-AS1 ENSG00000249492 PAIP1 FGF10-AS1 NNT ENSG00000249276 RPL29P12
GH05H043601 1.1 ENCODE 14.7 +0.2 202 3 HDGF PKNOX1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 SP3 MXD4 NNT-AS1 NNT TMEM267 ZNF131 CCL28
GH05H043631 1.3 Ensembl ENCODE dbSUPER 11.6 -28.2 -28155 0 HDGF CTCF PKNOX1 MAX RAD21 RFX5 YY1 POLR2A SMC3 ZNF143 NNT NNT-AS1 GC05M043668
GH05H043768 1.2 Ensembl ENCODE dbSUPER 12.3 -166.8 -166808 2 BRD4 ATF1 ZNF197 L3MBTL2 E2F5 ZNF175 PTTG1 PYGO2 ZNF644 NR2C1 NNT NNT-AS1 ENSG00000249276 RPL29P12
GH05H043554 1.1 ENCODE 12.1 +46.9 46856 3 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 ZC3H11A REST SMARCB1 NNT ENSG00000248240 C5orf34 EEF1A1P19 NNT-AS1 RPL29P12 ENSG00000249492 FGF10-AS1 LOC153684 ENSG00000272382
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NNT-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000180214 30 2401 HDGF PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 ZNF766 SP3

Genomic Location for NNT-AS1 Gene

Chromosome:
5
Start:
43,571,594 bp from pter
End:
43,603,230 bp from pter
Size:
31,637 bases
Orientation:
Minus strand

Genomic View for NNT-AS1 Gene

Genes around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NNT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NNT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NNT-AS1 Gene

Proteins for NNT-AS1 Gene

Post-translational modifications for NNT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NNT-AS1 Gene

Domains & Families for NNT-AS1 Gene

Gene Families for NNT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NNT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NNT-AS1 Gene

Function for NNT-AS1 Gene

Phenotypes From GWAS Catalog for NNT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NNT-AS1 Gene

Localization for NNT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NNT-AS1 Gene

Pathways & Interactions for NNT-AS1 Gene

SuperPathways for NNT-AS1 Gene

No Data Available

Interacting Proteins for NNT-AS1 Gene

Gene Ontology (GO) - Biological Process for NNT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NNT-AS1 Gene

Drugs & Compounds for NNT-AS1 Gene

No Compound Related Data Available

Transcripts for NNT-AS1 Gene

mRNA/cDNA for NNT-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NNT-AS1 Gene

No ASD Table

Relevant External Links for NNT-AS1 Gene

GeneLoc Exon Structure for
NNT-AS1
ECgene alternative splicing isoforms for
NNT-AS1

Expression for NNT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NNT-AS1 Gene

genes like me logo Genes that share expression patterns with NNT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NNT-AS1 Gene

Orthologs for NNT-AS1 Gene

Evolution for NNT-AS1 Gene

ENSEMBL:
Gene Tree for NNT-AS1 (if available)
TreeFam:
Gene Tree for NNT-AS1 (if available)

No data available for Orthologs for NNT-AS1 Gene

Paralogs for NNT-AS1 Gene

No data available for Paralogs for NNT-AS1 Gene

Variants for NNT-AS1 Gene

Sequence variations from dbSNP and Humsavar for NNT-AS1 Gene

SNP ID Clin Chr 05 pos Sequence Context AA Info Type
rs1000002629 -- 43,577,910(+) CACAG(C/G)ACATG intron-variant
rs1000016069 -- 43,580,150(+) ATTCT(C/G)TAGTG intron-variant
rs1000056445 -- 43,577,533(+) TCAGA(C/T)TCCAC intron-variant
rs1000169417 -- 43,572,989(+) ATTTT(A/G)TCAGT downstream-variant-500B
rs1000172541 -- 43,595,268(+) ATCTG(C/T)TCTCT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NNT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671038 CNV deletion 23128226
esv3604904 CNV gain 21293372
esv3604909 CNV loss 21293372
nsv830275 CNV gain 17160897
nsv980640 CNV duplication 23825009

Relevant External Links for NNT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NNT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NNT-AS1 Gene

Disorders for NNT-AS1 Gene

Relevant External Links for NNT-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NNT-AS1

No disorders were found for NNT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NNT-AS1 Gene

Publications for NNT-AS1 Gene

  1. Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer. (PMID: 28628975) Hua F … Yang J (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 60
  2. Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo. (PMID: 27966450) Wang Q … Feng G (Oncotarget 2017) 2 3 60
  3. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 60
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 60

Products for NNT-AS1 Gene

Sources for NNT-AS1 Gene

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