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NMS Gene

protein-coding   GIFtS: 47
GCID: GC02P101086

Neuromedin S

  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Neuromedin S1 2
prepro-NMS1 2
neuromedin-S2
HMSNR5
NMSR5

External Ids:    HGNC: 322031   Entrez Gene: 1295212   Ensembl: ENSG000002046407   OMIM: 6052855   UniProtKB: Q5H8A33   

Export aliases for NMS gene to outside databases

Previous GC identifers: GC02P100546 GC02P100453 GC02P094851


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NMS Gene:
NMS (neuromedin S) is a protein-coding gene. Diseases associated with NMS include bjornstad syndrome, and vulvar melanoma.

UniProtKB/Swiss-Prot: NMS_HUMAN, Q5H8A3
Function: Implicated in the regulation of circadian rhythms through autocrine and/or paracrine actions (By
similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000002.12  NC_018913.2  NT_005403.18  
Regulatory elements:
   Regulatory transcription factor binding sites in the NMS gene promoter:
         STAT1   AML1a   NRSF form 1   NF-YC   CUTL1   Nkx2-5   Cdc5   NRSF form 2   Evi-1   IRF-2   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNMS promoter sequence
   Search Chromatin IP Primers for NMS

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NMS


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q11.2   Ensembl cytogenetic band:  2q11.2   HGNC cytogenetic band: 2q11.2

NMS Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NMS gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02P101086:  view genomic region     (about GC identifiers)

Start:
101,086,944 bp from pter      End:
101,099,742 bp from pter
Size:
12,799 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, and/or Cloud-Clone Corp.)
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UniProtKB/Swiss-Prot: NMS_HUMAN, Q5H8A3 (See protein sequence)
Recommended Name: Neuromedin-S precursor  
Size: 153 amino acids; 17731 Da

Explore the universe of human proteins at neXtProt for NMS: NX_Q5H8A3

Explore proteomics data for NMS at MOPED


See NMS Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001011717.1  
ENSEMBL proteins: 
 ENSP00000366061  
Reactome Protein details: Q5H8A3

NMS Human Recombinant Protein Products:

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Cloud-Clone Corp. CLIAs for NMS


(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
ENDOLIG: Endogenous ligands

1 InterPro protein domain:
 IPR018070 Neuromedin-U_amidation-site

Graphical View of Domain Structure for InterPro Entry Q5H8A3

ProtoNet protein and cluster: Q5H8A3

UniProtKB/Swiss-Prot: NMS_HUMAN, Q5H8A3
Similarity: Belongs to the NmU family


NMS for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: NMS_HUMAN, Q5H8A3
Function: Implicated in the regulation of circadian rhythms through autocrine and/or paracrine actions (By
similarity)

Animal Models:

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Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NMS

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Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NMS


(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
NMS_HUMAN, Q5H8A3: Secreted (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
extracellular4
cytoskeleton1
cytosol1
mitochondrion1
nucleus1
plasma membrane1

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005576extracellular region TAS--

NMS for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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SuperPaths for NMS About    
See pathways by source

SuperPathContained pathways About
1Peptide ligand-binding receptors
Class A/1 (Rhodopsin-like receptors)0.71
Peptide ligand-binding receptors0.60
GPCR ligand binding0.71
G alpha (i) signalling events0.44
2Signaling by GPCR
Signaling by GPCR0.90
Signal Transduction0.58
GPCR downstream signaling0.90
3Gastrin-CREB signalling pathway via PKC and MAPK
Gastrin-CREB signalling pathway via PKC and MAPK0.90
G alpha (q) signalling events0.90

Pathways by source                                                                                                                                                                 See SuperPaths
Show all pathways


3 Reactome Pathways for NMS
    Peptide ligand-binding receptors
G alpha (q) signalling events
G alpha (i) signalling events



NMS for pathways           About GeneDecksing

    Pathway & Disease-focused RT2 Profiler PCR Array including NMS: 
          Circadian Rhythms in human mouse rat

Interactions:

    Search GeneGlobe Interaction Network for NMS

STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

Selected Interacting proteins for NMS (Q5H8A33 ENSP000003660614) via UniProtKB, MINT, STRING, and/or I2D (see all 247)
InteractantInteraction Details
GeneCardExternal ID(s)
NMUR1Q9HB893, ENSP000003058774I2D: score=3 STRING: ENSP00000305877
NMUR2Q9GZQ43, ENSP000002552624I2D: score=2 STRING: ENSP00000255262
CASRENSP000002961544STRING: ENSP00000296154
CCKENSP000003356574STRING: ENSP00000335657
DRD2ENSP000003548594STRING: ENSP00000354859
About this table

Gene Ontology (GO): 2 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006940regulation of smooth muscle contraction ----
GO:0007218neuropeptide signaling pathway IEA--

NMS for ontologies           About GeneDecksing



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for NMS



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
Conferences by KenesGroup, exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for NMS gene: 
NM_001011717.1  

Unigene Cluster for NMS:

Neuromedin S
Hs.567676
Unigene Representative Sequence: AB164464
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000376865(uc002tan.1)
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Primer
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Additional mRNA sequence: AB164464.1 

1 DOTS entry:

DT.120994010 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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See probesets specificity/sensitivity at GeneAnnot
CGAP TAG: CTACAGATTC


NMS expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 
 Brain (Nervous System)    fully expand to see all 7 entries
         Thalamus
         Midbrain   
NMS Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

NMS Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.567676
    Pathway & Disease-focused RT2 Profiler PCR Array including NMS: 
          Circadian Rhythms in human mouse rat

Primer
Products:
OriGene qSTAR qPCR primer pairs in human, mouse for NMS
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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NMS

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for NMS gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Nms1 , 5 neuromedin S1, 5 76.44(n)1
66(a)1
  1 (17.31 cM)5
4332921  NM_001011684.21  NP_001011684.31 
 389391495 
zebrafish
(Danio rerio)
Actinopterygii BC057408.12   -- 73.69(n)   393603  BC057408.1 


ENSEMBL Gene Tree for NMS (if available)
TreeFam Gene Tree for NMS (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for NMS gene
1 SIMAP similar gene for NMS using alignment to 1 protein entry:     NMS_HUMAN:
NMU

NMS for paralogs           About GeneDecksing



(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for NMS (see all 376)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs803477461,2
F--101084947(+) TGCATA/GAACAC 1 -- us2k11Minor allele frequency- G:0.04WA 118
rs75993211,2
C,F,A,H--101085113(+) AAAAAT/GCATTT 1 -- us2k110Minor allele frequency- G:0.29NS EA NA WA 780
rs1998270111,2
C--101085125(+) TCATG-/TTTTTT 1 -- us2k10--------
rs1424485121,2
--101085254(+) ACTGTA/TATAAA 1 -- us2k10--------
rs76087741,2
C,F,A,H--101085322(+) GTAGTG/TTATAA 1 -- us2k18Minor allele frequency- T:0.28NS NA WA EA 478
rs75995571,2
C,F,A--101085332(+) ATTATT/CGCTCT 1 -- us2k16Minor allele frequency- C:0.29NA WA EA 364
rs75995651,2
C,F,A--101085339(+) CTCTGT/CTATGA 1 -- us2k16Minor allele frequency- C:0.29NA WA EA 364
rs75968511,2
C,F,H--101085481(+) TATTAA/GCATGT 1 -- us2k1 tfbs38Minor allele frequency- G:0.28NS EA WA NA 774
rs1468521331,2
--101085483(+) TTAACA/GTGTTT 1 -- us2k10--------
rs46307911,2
C,F,A,H--101085556(+) AAAGAC/TATGCG 1 -- us2k1 tfbs310Minor allele frequency- T:0.29NS EA NA WA 782

HapMap Linkage Disequilibrium report for NMS (101086944 - 101099742 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for NMS:    About this table    
Variant IDTypeSubtypePubMed ID
nsv834312CNV Loss17160897

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing NMS
DNA2.0 Custom Variant and Variant Library Synthesis for NMS

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Conferences by KenesGroup, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 605285    OMIM disorders: --

10 diseases for NMS:    
About MalaCards
bjornstad syndrome    vulvar melanoma    gracile syndrome    mitochondrial complex iii deficiency
acral lentiginous melanoma    nodular malignant melanoma    neuroleptic malignant syndrome    thymoma
anorexia nervosa    melanoma

3 diseases from the University of Copenhagen DISEASES database for NMS:
Nodular malignant melanoma     Acral lentiginous melanoma     Vulvar melanoma

NMS for disorders           About GeneDecksing

Genetic Association Database (GAD): NMS
Human Genome Epidemiology (HuGE) Navigator: NMS (10 documents)

Export disorders for NMS gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NMS gene integrated from 10 sources:
(articles sorted by number of sources associating them with NMS)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of neuromedin S and its possible role in the mammalian circadian oscillator system. (PubMed id 15635449)1, 2, 3 Mori K.... Kangawa K. (EMBO J. 2005)
  2. Association study of 182 candidate genes in anorexia nervosa. (PubMed id 20468064)1, 4 Pinheiro A.P....Woodside D.B. (Am. J. Med. Genet. B Neuropsychiatr. Genet. 2010)
  3. Expression and vasoconstrictor function of anorexigenic peptides neuromedin U-25 and S in the human cardiovascular system. (PubMed id 18987052)1, 9 Mitchell J.D....Davenport A.P. (Cardiovasc. Res. 2009)
  4. Emerging pharmacology and physiology of neuromedin U and the structurally related peptide neuromedin S. (PubMed id 19519756)1, 9 Mitchell J.D....Davenport A.P. (Br. J. Pharmacol. 2009)
  5. Identification and functional analysis of a novel ligand for G protein-coupled receptor, Neuromedin S. (PubMed id 17870195)1 Miyazato M....Kangawa K. (Regul. Pept. 2008)
  6. Stable association between G alpha(q) and phospholipase C beta 1 in living cells. (PubMed id 16754659)1 Dowal L....Scarlata S. (J. Biol. Chem. 2006)
  7. Identification and characterization of two neuromedin U receptors differentially expressed in peripheral tissues and the central nervous system. (PubMed id 10899166)1 Raddatz R....Adham N. (J. Biol. Chem. 2000)
  8. Expression of NMS and NMU2R in the pig reproductive axis during the estrus cycle and the effect of NMS on the reproductive axis in vitro. (PubMed id 19781586)9 Yang G....Liu Y. (Peptides 2009)
  9. Structural and functional analogs of the novel mammalian neuropeptide, neuromedin S (NmS), in the dermal venoms of Eurasian bombinid toads. (PubMed id 16682011)9 Chen T....Shaw C. (Biochem. Biophys. Res. Commun. 2006)
  10. Appetite-modifying actions of pro-neuromedin U-derived peptides. (PubMed id 19531638)9 Bechtold D.A....Luckman S.M. (Am. J. Physiol. Endocrinol. Metab. 2009)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 129521 HGNC: 32203 Ensembl:ENSG00000204640 euGenes: HUgn129521 ECgene: NMS
H-InvDB: NMS

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for NMS Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NMS gene:
Search GeneIP for patents involving NMS

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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 Block miRNA regulation of human, mouse, rat NMS using miScript Target Protectors SeqTarget long-range PCR primers for resequencing NMS
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 PCR Arrays including human, mouse, rat NMS Search Chromatin IP Primers for NMS
 Pre-validated RT2 qPCR Primer Assay in human, mouse, rat NMS  Search GeneGlobe Interaction Network for NMS
 Regulatory tfbs in NMS promoter
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 Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies

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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014

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