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NME9 Gene(Protein Coding)

NME/NM23 Family Member 9

GCID:
GC03M138261
GIFtS:
43
Genes Participants
UDN Logo

Aliases for NME9 Gene

Aliases for NME9 Gene

  • NME/NM23 Family Member 9 2 3 5
  • Thioredoxin-Like Protein 2 3 4
  • NME Gene Family Member 9 2 3
  • TXNDC6 3 4
  • TXL-2 3 4
  • TXL2 3 4
  • Thioredoxin Domain Containing 6 2
  • NME Family Member 9 2
  • NM23-H9 3

External Ids for NME9 Gene

Previous HGNC Symbols for NME9 Gene

  • TXNDC6

Previous GeneCards Identifiers for NME9 Gene

  • GC03M137981

Summaries for NME9 Gene

GeneCards Summary for NME9 Gene

NME9 (NME/NM23 Family Member 9) is a Protein Coding gene. GO annotations related to this gene include nucleoside diphosphate kinase activity. An important paralog of this gene is NME7.

UniProtKB/Swiss-Prot for NME9 Gene

  • May be a regulator of microtubule physiology.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NME9 Gene

Genomics for NME9 Gene

Products:

  1. Regulatory Element

Regulatory Elements for NME9 Gene

Enhancers for NME9 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NME9 on UCSC Golden Path with GeneCards custom track

Promoters for NME9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NME9 on UCSC Golden Path with GeneCards custom track

Genomic Location for NME9 Gene

Chromosome:
3
Start:
138,261,437 bp from pter
End:
138,330,149 bp from pter
Size:
68,713 bases
Orientation:
Minus strand

Genomic View for NME9 Gene

Genes around NME9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NME9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NME9 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NME9 Gene

Proteins for NME9 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NME9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XW9-TXND6_HUMAN
    Recommended name:
    Thioredoxin domain-containing protein 6
    Protein Accession:
    Q86XW9
    Secondary Accessions:
    • Q7Z4A8
    • Q8N1V7

    Protein attributes for NME9 Gene

    Size:
    330 amino acids
    Molecular mass:
    36856 Da
    Quaternary structure:
    • Monomer and homodimer.
    Miscellaneous:
    • Shows no detectable enzyme activity.

    Alternative splice isoforms for NME9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NME9 Gene

Proteomics data for NME9 Gene at MOPED

Protein Expression for NME9 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NME9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NME9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NME9 Gene

Domains & Families for NME9 Gene

Gene Families for NME9 Gene

HGNC:

Protein Domains for NME9 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NME9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86XW9

UniProtKB/Swiss-Prot:

TXND6_HUMAN :
  • Contains 1 thioredoxin domain.
  • Belongs to the NDK family.
Domain:
  • Contains 1 thioredoxin domain.
Family:
  • Belongs to the NDK family.
genes like me logo Genes that share domains with NME9: view

Function for NME9 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line
  7. Flow Cytometry

Molecular function for NME9 Gene

UniProtKB/Swiss-Prot Function:
May be a regulator of microtubule physiology.

Phenotypes for NME9 Gene

GenomeRNAi human phenotypes for NME9:
genes like me logo Genes that share phenotypes with NME9: view

Animal Model Products

Inhibitory RNA Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NME9 Gene

Localization for NME9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NME9 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Note=Associated with microtubules. Detected in cilia of lung epithelium, and associated with the spermatid tail and manchette (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NME9 Gene COMPARTMENTS Subcellular localization image for NME9 gene
Compartment Confidence
cytoskeleton 3
cytosol 3
nucleus 3

Gene Ontology (GO) - Cellular Components for NME9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with NME9: view

Pathways & Interactions for NME9 Gene

SuperPathways for NME9 Gene

PathCards logoMore details on SuperPathways for NME9
No Data Available

Interacting Proteins for NME9 Gene

Gene Ontology (GO) - Biological Process for NME9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006183 GTP biosynthetic process IEA --
GO:0006228 UTP biosynthetic process IEA --
genes like me logo Genes that share ontologies with NME9: view

No data available for Pathways by source and SIGNOR curated interactions for NME9 Gene

Drugs & Compounds for NME9 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NME9 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone
  5. Flow Cytometry

mRNA/cDNA for NME9 Gene

(12) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NME9 Gene

NME/NM23 family member 9:
Representative Sequences:

Inhibitory RNA Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NME9 Gene

No ASD Table

Relevant External Links for NME9 Gene

GeneLoc Exon Structure for
NME9
ECgene alternative splicing isoforms for
NME9

Expression for NME9 Gene

Products:

  1. Primer

mRNA expression in normal human tissues for NME9 Gene

mRNA expression in normal human tissues for NME9 Gene
mRNA expression by BioGPS for NME9 GenemRNA expression by GTEx for NME9 Gene

Protein differential expression in normal tissues from HIPED for NME9 Gene

This gene is overexpressed in Neutrophil (45.5) and Heart (23.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NME9 Gene



SOURCE GeneReport for Unigene cluster for NME9 Gene Hs.660992

mRNA Expression by UniProt/SwissProt for NME9 Gene

Q86XW9-TXND6_HUMAN
Tissue specificity: Detected at very low levels in testis, lung and brain.
genes like me logo Genes that share expression patterns with NME9: view

Protein tissue co-expression partners for NME9 Gene

- Elite partner

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA differential expression in normal tissues for NME9 Gene

Orthologs for NME9 Gene

This gene was present in the common ancestor of animals.

Orthologs for NME9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
 Mammalia NME9 35
  • 88.76 (n)
  • 86.35 (a)
NME9 36
  • 60 (a)
 OneToOne
dog
(Canis familiaris)
 Mammalia NME9 35
  • 87.95 (n)
  • 85.94 (a)
NME9 36
  • 67 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Nme9 35
  • 80.79 (n)
  • 79.39 (a)
Nme9 16
1600029I14Rik 36
  • 80 (a)
 OneToOne
chimpanzee
(Pan troglodytes)
 Mammalia TXNDC6 35
  • 99.46 (n)
  • 100 (a)
NME9 36
  • 94 (a)
 OneToOne
rat
(Rattus norvegicus)
 Mammalia Nme9 35
  • 80.93 (n)
  • 80 (a)
oppossum
(Monodelphis domestica)
 Mammalia NME9 36
  • 52 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia NME9 36
  • 45 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii nme8 36
  • 22 (a)
 OneToOne
fruit fly
(Drosophila melanogaster)
 Insecta nmdyn-D6 36
  • 17 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea -- 36
  • 18 (a)
 OneToMany
Species with no ortholog for NME9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NME9 Gene

ENSEMBL:
Gene Tree for NME9 (if available)
TreeFam:
Gene Tree for NME9 (if available)

Paralogs for NME9 Gene

Paralogs for NME9 Gene

(2) SIMAP similar genes for NME9 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with NME9: view

Variants for NME9 Gene

Sequence variations from dbSNP and Humsavar for NME9 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs9815238 -- 138,332,144(+) TTTTT(G/T)GTTTT upstream-variant-2KB
rs10580643 -- 138,322,486(+) AAGGG(-/GTGT)GTGTG intron-variant
rs4678406 -- 138,312,597(+) acaaa(C/T)acaaa intron-variant
rs4678407 -- 138,331,843(+) TGGGC(A/C)TGGTG upstream-variant-2KB
rs58680542 -- 138,325,411(+) TTTTT(-/T)GTTTT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NME9 Gene

Variant ID Type Subtype PubMed ID
nsv428422 CNV Gain+Loss 18775914
nsv4030 CNV Insertion 18451855
nsv877537 CNV Gain 21882294
nsv822263 CNV Loss 20364138
nsv822264 CNV Loss 20364138
nsv528349 CNV Loss 19592680

Variation tolerance for NME9 Gene

Residual Variation Intolerance Score: 56.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.07; 37.86% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for NME9 Gene

Disorders for NME9 Gene

Relevant External Links for NME9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NME9

No disorders were found for NME9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NME9 Gene

Publications for NME9 Gene

  1. Characterization of human thioredoxin-like 2. A novel microtubule- binding thioredoxin expressed predominantly in the cilia of lung airway epithelium and spermatid manchette and axoneme. (PMID: 12569107) Sadek C.M. … Miranda-Vizuete A. (J. Biol. Chem. 2003) 2 3 4 23 67
  2. Nme protein family evolutionary history, a vertebrate perspective. (PMID: 19852809) Desvignes T. … Bobe J. (BMC Evol. Biol. 2009) 2 3
  3. Thioredoxin-like protein 2b facilitates colon cancer cell proliferation and inhibits apoptosis via NF-I_B pathway. (PMID: 25555669) Lu Y. … Fan D. (Cancer Lett. 2015) 3
  4. Thioredoxin-like protein 2 is overexpressed in colon cancer and promotes cancer cell metastasis by interaction with ran. (PMID: 23311631) Lu Y. … Fan D. (Antioxid. Redox Signal. 2013) 3
  5. Genome-wide association with MRI atrophy measures as a quantitative trait locus for Alzheimer's disease. (PMID: 21116278) Furney S.J. … . (Mol. Psychiatry 2011) 3

Products for NME9 Gene

Sources for NME9 Gene

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