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NME9 Gene(Protein Coding)

NME/NM23 Family Member 9

GCID:
GC03M138261
GIFtS:
41
Genes Participants
UDN Logo

Aliases for NME9 Gene

Aliases for NME9 Gene

  • NME/NM23 Family Member 9 2 3 5
  • Thioredoxin-Like Protein 2 3 4
  • NME Gene Family Member 9 2 3
  • TXNDC6 3 4
  • TXL-2 3 4
  • TXL2 3 4
  • Thioredoxin Domain-Containing Protein 6 3
  • Thioredoxin Domain Containing 6 2
  • NME Family Member 9 2
  • NM23-H9 3

External Ids for NME9 Gene

Previous HGNC Symbols for NME9 Gene

  • TXNDC6

Previous GeneCards Identifiers for NME9 Gene

  • GC03M137981

Summaries for NME9 Gene

GeneCards Summary for NME9 Gene

NME9 (NME/NM23 Family Member 9) is a Protein Coding gene. GO annotations related to this gene include nucleoside diphosphate kinase activity. An important paralog of this gene is NME8.

UniProtKB/Swiss-Prot for NME9 Gene

  • May be a regulator of microtubule physiology.

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NME9 Gene

Genomics for NME9 Gene

Products:

  1. Regulatory Element

Regulatory Elements for NME9 Gene

Enhancers for NME9 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03G138410 1.3 Ensembl ENCODE dbSUPER 11.5 -82.3 -82301 3.7 ZNF766 ELK1 FOS IKZF2 ZBTB11 TFDP1 ZNF589 SMARCA4 IKZF1 IRF1 NME9 MRAS ESYT3 LOC105374129 GC03M138428
GH03G138417 1.2 Ensembl ENCODE dbSUPER 11.7 -88.3 -88346 1.8 CTCF FOXA2 ZSCAN4 ZNF2 RAD21 ZNF316 GATA3 ZNF143 SMC3 MAFK NME9 LOC105374129 GC03M138428
GH03G138393 0.9 dbSUPER 15.4 -65.7 -65707 4.0 RB1 ZNF76 KLF17 SIN3A DMAP1 ZNF2 RAD21 ZNF335 GLIS2 ZNF366 MRAS NME9 GC03P138407 GC03M138344
GH03G138367 1 Ensembl ENCODE dbSUPER 11.5 -37.7 -37653 1.2 RFX1 EGR1 ZSCAN4 BMI1 NME9 MRAS GC03M138344 GC03P138407
GH03G138363 0.9 dbSUPER 11.5 -34.7 -34689 3.1 ATF1 FOXA2 FEZF1 ZNF2 FOS ZNF263 TSHZ1 GLIS1 WT1 PRDM4 DBR1 NME9 MRAS DZIP1L GC03M138344 GC03P138407
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NME9 on UCSC Golden Path with GeneCards custom track

Promoters for NME9 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000158998 549 1201 ELF3 HDGF PKNOX1 FOXA2 SIN3A ARID4B BMI1 ZBTB40 RAD21 GLIS2

Genomic Location for NME9 Gene

Chromosome:
3
Start:
138,261,437 bp from pter
End:
138,330,149 bp from pter
Size:
68,713 bases
Orientation:
Minus strand

Genomic View for NME9 Gene

Genes around NME9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NME9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NME9 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NME9 Gene

Proteins for NME9 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NME9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86XW9-TXND6_HUMAN
    Recommended name:
    Thioredoxin domain-containing protein 6
    Protein Accession:
    Q86XW9
    Secondary Accessions:
    • Q7Z4A8
    • Q8N1V7

    Protein attributes for NME9 Gene

    Size:
    330 amino acids
    Molecular mass:
    36856 Da
    Quaternary structure:
    • Monomer and homodimer.
    Miscellaneous:
    • Shows no detectable enzyme activity.

    Alternative splice isoforms for NME9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NME9 Gene

Protein Expression for NME9 Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NME9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NME9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NME9 Gene

Domains & Families for NME9 Gene

Gene Families for NME9 Gene

HGNC:

Protein Domains for NME9 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NME9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86XW9

UniProtKB/Swiss-Prot:

TXND6_HUMAN :
  • Belongs to the NDK family.
Family:
  • Belongs to the NDK family.
genes like me logo Genes that share domains with NME9: view

Function for NME9 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for NME9 Gene

UniProtKB/Swiss-Prot Function:
May be a regulator of microtubule physiology.

Gene Ontology (GO) - Molecular Function for NME9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004550 nucleoside diphosphate kinase activity IEA --
genes like me logo Genes that share ontologies with NME9: view
genes like me logo Genes that share phenotypes with NME9: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NME9 Gene

Localization for NME9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NME9 Gene

Cytoplasm. Cytoplasm, cytoskeleton. Note=Associated with microtubules. Detected in cilia of lung epithelium, and associated with the spermatid tail and manchette (By similarity). {ECO:0000250}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NME9 gene
Compartment Confidence
cytoskeleton 3
nucleus 3
cytosol 3

Gene Ontology (GO) - Cellular Components for NME9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005623 cell IEA --
GO:0005737 cytoplasm IEA --
GO:0005856 cytoskeleton IEA --
genes like me logo Genes that share ontologies with NME9: view

Pathways & Interactions for NME9 Gene

SuperPathways for NME9 Gene

PathCards logo More details on SuperPathways for NME9
No Data Available

Interacting Proteins for NME9 Gene

Selected Interacting proteins: Q86XW9-TXND6_HUMAN for NME9 Gene via IID

Gene Ontology (GO) - Biological Process for NME9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006165 nucleoside diphosphate phosphorylation IEA --
GO:0006183 GTP biosynthetic process IEA --
GO:0006228 UTP biosynthetic process IEA --
GO:0006241 CTP biosynthetic process IEA --
GO:0045454 cell redox homeostasis IEA --
genes like me logo Genes that share ontologies with NME9: view

No data available for Pathways by source and SIGNOR curated interactions for NME9 Gene

Drugs & Compounds for NME9 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NME9 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NME9 Gene

(26) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(15) Selected AceView cDNA sequences:
(10) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NME9 Gene

NME/NM23 family member 9:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Alternative Splicing Database (ASD) splice patterns (SP) for NME9 Gene

No ASD Table

Relevant External Links for NME9 Gene

GeneLoc Exon Structure for
NME9
ECgene alternative splicing isoforms for
NME9

Expression for NME9 Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NME9 Gene

mRNA expression in normal human tissues for NME9 Gene
mRNA expression by BioGPS for NME9 GenemRNA expression by GTEx for NME9 Gene

Protein differential expression in normal tissues from HIPED for NME9 Gene

This gene is overexpressed in Neutrophil (45.5) and Heart (23.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NME9 Gene



Protein tissue co-expression partners for NME9 Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NME9 Gene:

NME9

SOURCE GeneReport for Unigene cluster for NME9 Gene:

Hs.660992

mRNA Expression by UniProt/SwissProt for NME9 Gene:

Q86XW9-TXND6_HUMAN
Tissue specificity: Detected at very low levels in testis, lung and brain.

Evidence on tissue expression from TISSUES for NME9 Gene

  • Nervous system(4.2)
genes like me logo Genes that share expression patterns with NME9: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Phenotype-based relationships between genes and organs from Gene ORGANizer for NME9 Gene

Orthologs for NME9 Gene

This gene was present in the common ancestor of animals.

Orthologs for NME9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia TXNDC6 34
  • 99.46 (n)
NME9 35
  • 94 (a)
 OneToOne
cow
(Bos Taurus)
 Mammalia NME9 34 35
  • 88.76 (n)
dog
(Canis familiaris)
 Mammalia NME9 34 35
  • 87.95 (n)
rat
(Rattus norvegicus)
 Mammalia Nme9 34
  • 80.93 (n)
mouse
(Mus musculus)
 Mammalia Nme9 34 16
  • 80.79 (n)
1600029I14Rik 35
  • 80 (a)
 OneToOne
oppossum
(Monodelphis domestica)
 Mammalia NME9 35
  • 52 (a)
 OneToOne
platypus
(Ornithorhynchus anatinus)
 Mammalia NME9 35
  • 45 (a)
 OneToOne
zebrafish
(Danio rerio)
 Actinopterygii nme8 35
  • 22 (a)
 OneToOne
fruit fly
(Drosophila melanogaster)
 Insecta nmdyn-D6 35
  • 17 (a)
 OneToMany
sea squirt
(Ciona savignyi)
 Ascidiacea -- 35
  • 18 (a)
 OneToMany
Species where no ortholog for NME9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NME9 Gene

ENSEMBL:
Gene Tree for NME9 (if available)
TreeFam:
Gene Tree for NME9 (if available)

Paralogs for NME9 Gene

Paralogs for NME9 Gene

(2) SIMAP similar genes for NME9 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with NME9: view

Variants for NME9 Gene

Sequence variations from dbSNP and Humsavar for NME9 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs1000022483 -- 138,262,137(+) AAAAA(A/C/G)GGAAA intron-variant, utr-variant-3-prime
rs1000266002 -- 138,318,274(+) CCCAA(C/T)TGATT intron-variant
rs1000282302 -- 138,327,874(+) TATTA(C/G)CCCCA intron-variant, upstream-variant-2KB
rs1000327694 -- 138,269,253(+) TATAT(A/C)GATCT intron-variant
rs1000338062 -- 138,303,529(+) TCTTT(C/G)TCTGA nc-transcript-variant, reference, missense, utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NME9 Gene

Variant ID Type Subtype PubMed ID
nsv4030 CNV insertion 18451855
nsv428422 CNV gain+loss 18775914
nsv528349 CNV loss 19592680
nsv822263 CNV loss 20364138
nsv822264 CNV loss 20364138

Variation tolerance for NME9 Gene

Residual Variation Intolerance Score: 56.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.07; 37.86% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NME9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NME9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NME9 Gene

Disorders for NME9 Gene

Relevant External Links for NME9

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NME9

No disorders were found for NME9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NME9 Gene

Publications for NME9 Gene

  1. Characterization of human thioredoxin-like 2. A novel microtubule- binding thioredoxin expressed predominantly in the cilia of lung airway epithelium and spermatid manchette and axoneme. (PMID: 12569107) Sadek C.M. … Miranda-Vizuete A. (J. Biol. Chem. 2003) 2 3 4 22 64
  2. Nme protein family evolutionary history, a vertebrate perspective. (PMID: 19852809) Desvignes T. … Bobe J. (BMC Evol. Biol. 2009) 2 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64
  4. Thioredoxin-like protein 2b facilitates colon cancer cell proliferation and inhibits apoptosis via NF-I_B pathway. (PMID: 25555669) Lu Y. … Fan D. (Cancer Lett. 2015) 3 64
  5. Thioredoxin-like protein 2 is overexpressed in colon cancer and promotes cancer cell metastasis by interaction with ran. (PMID: 23311631) Lu Y. … Fan D. (Antioxid. Redox Signal. 2013) 3 64

Products for NME9 Gene

Sources for NME9 Gene

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