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Aliases for NME1-NME2 Gene

Aliases for NME1-NME2 Gene

  • NME1-NME2 Readthrough 2 3 5
  • NME1-NME2 Readthrough Transcript 3
  • NME1-NME2 Protein 3
  • NM23-LV 3
  • NMELV 3

External Ids for NME1-NME2 Gene

Previous GeneCards Identifiers for NME1-NME2 Gene

  • GC17U900586
  • GC17P046586
  • GC17P049230
  • GC17P044600

Summaries for NME1-NME2 Gene

Entrez Gene Summary for NME1-NME2 Gene

  • This locus represents naturally occurring read-through transcription between the neighboring NME1 and NME2 genes. The significance of this read-through transcription and the function of the resulting protein product have not yet been determined. Alternative splicing of this gene results in multiple transcript variants. [provided by RefSeq, Nov 2010]

GeneCards Summary for NME1-NME2 Gene

NME1-NME2 (NME1-NME2 Readthrough) is a Protein Coding gene. Diseases associated with NME1-NME2 include Bladder Disease and Radiation Cystitis. Among its related pathways are Validated targets of C-MYC transcriptional activation and superpathway of pyrimidine deoxyribonucleotides de novo biosynthesis. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and protein histidine kinase activity. An important paralog of this gene is NME1.

Gene Wiki entry for NME1-NME2 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NME1-NME2 Gene

Genomics for NME1-NME2 Gene

Regulatory Elements for NME1-NME2 Gene

Enhancers for NME1-NME2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH17G050945 1.9 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -204.3 -204284 6.8 HDGF PKNOX1 CREB3L1 ARNT ARID4B SIN3A ZNF2 ZBTB7B YY1 ZNF766 NME1 WFIKKN2 NME1-NME2 NME2 ENSG00000251665 ENSG00000247011 ENSG00000249870
GH17G050953 1.8 FANTOM5 Ensembl ENCODE dbSUPER 10.7 -198.5 -198527 3.0 FOXA2 ARNT ARID4B SIN3A FEZF1 ZNF2 ZNF48 GLIS2 ZNF143 ZNF263 NME2 WFIKKN2 NME1-NME2 NME1 ENSG00000251665 ENSG00000247011 ENSG00000249870
GH17G051029 1.5 Ensembl ENCODE dbSUPER 11.1 -123.5 -123482 2.1 FOXA2 ARNT ZFP64 ARID4B SIN3A SLC30A9 FOS SP5 NFYC MXD4 NME1 NME1-NME2 NME2 ENSG00000251665 ENSG00000249870 ENSG00000247011
GH17G050956 1.4 Ensembl ENCODE dbSUPER 10.7 -196.6 -196563 0.9 ELF3 HDGF PKNOX1 NFIB ARID4B SIN3A KLF17 ZNF2 ZNF48 RAD21 WFIKKN2 NME1 NME1-NME2 NME2 ENSG00000247011 ENSG00000249870
GH17G051056 1.3 Ensembl ENCODE dbSUPER 11.5 -96.2 -96224 1.9 CTCF TFAP4 PKNOX1 FOXA2 NFRKB SIN3A CHD7 ZIC2 RAD21 TEAD3 NME1 NME1-NME2 NME2 ENSG00000251665 WFIKKN2 ENSG00000249870 SPAG9
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NME1-NME2 on UCSC Golden Path with GeneCards custom track

Promoters for NME1-NME2 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000095799 264 2001 MLX CREB3L1 ZFP64 FEZF1 DMAP1 YBX1 YY1 SLC30A9 ZNF143 ZNF263

Genomic Location for NME1-NME2 Gene

Chromosome:
17
Start:
51,153,536 bp from pter
End:
51,171,744 bp from pter
Size:
18,209 bases
Orientation:
Plus strand

Genomic View for NME1-NME2 Gene

Genes around NME1-NME2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NME1-NME2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NME1-NME2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NME1-NME2 Gene

Proteins for NME1-NME2 Gene

  • Protein details for NME1-NME2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    J3KPD9
    Recommended name:
    NME1-NME2 readthrough
    Protein Accession:
    J3KPD9

    Protein attributes for NME1-NME2 Gene

    Size:
    197 amino acids
    Molecular mass:
    22422 Da
    Quaternary structure:
    No Data Available
  • Protein details for NME1-NME2 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    Q32Q12
    Recommended name:
    Nucleoside diphosphate kinase
    Protein Accession:
    Q32Q12

    Protein attributes for NME1-NME2 Gene

    Size:
    292 amino acids
    Molecular mass:
    32642 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NME1-NME2 Gene

Post-translational modifications for NME1-NME2 Gene

No Post-translational modifications

Other Protein References for NME1-NME2 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NME1-NME2 Gene

Domains & Families for NME1-NME2 Gene

Protein Domains for NME1-NME2 Gene

Suggested Antigen Peptide Sequences for NME1-NME2 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NME1-NME2: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NME1-NME2 Gene

Function for NME1-NME2 Gene

Gene Ontology (GO) - Molecular Function for NME1-NME2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004550 nucleoside diphosphate kinase activity IEA --
GO:0005524 ATP binding IEA --
GO:0016301 kinase activity IEA --
GO:0016740 transferase activity IEA --
genes like me logo Genes that share ontologies with NME1-NME2: view
genes like me logo Genes that share phenotypes with NME1-NME2: view

Animal Model Products

CRISPR Products

Clone Products

Flow Cytometry Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NME1-NME2 Gene

Localization for NME1-NME2 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NME1-NME2 gene
Compartment Confidence
extracellular 5
nucleus 5
cytosol 5
cytoskeleton 3
mitochondrion 3
plasma membrane 2

Gene Ontology (GO) - Cellular Components for NME1-NME2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005829 cytosol IDA --
genes like me logo Genes that share ontologies with NME1-NME2: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for NME1-NME2 Gene

Pathways & Interactions for NME1-NME2 Gene

genes like me logo Genes that share pathways with NME1-NME2: view

Interacting Proteins for NME1-NME2 Gene

Gene Ontology (GO) - Biological Process for NME1-NME2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006165 nucleoside diphosphate phosphorylation IEA --
GO:0006183 GTP biosynthetic process IEA --
GO:0006228 UTP biosynthetic process IEA --
GO:0006241 CTP biosynthetic process IEA --
GO:0016310 phosphorylation IEA --
genes like me logo Genes that share ontologies with NME1-NME2: view

No data available for SIGNOR curated interactions for NME1-NME2 Gene

Transcripts for NME1-NME2 Gene

mRNA/cDNA for NME1-NME2 Gene

(1) REFSEQ mRNAs :
(3) Ensembl transcripts including schematic representations, and UCSC links where relevant :

CRISPR Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NME1-NME2 Gene

No ASD Table

Relevant External Links for NME1-NME2 Gene

GeneLoc Exon Structure for
NME1-NME2
ECgene alternative splicing isoforms for
NME1-NME2

Expression for NME1-NME2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NME1-NME2 Gene

Protein differential expression in normal tissues from HIPED for NME1-NME2 Gene

This gene is overexpressed in Saliva (16.3) and Brain (15.5).

Integrated Proteomics: protein expression in normal tissues and cell lines from PaxDb, MaxQB, and MOPED for NME1-NME2 Gene



Protein tissue co-expression partners for NME1-NME2 Gene

Evidence on tissue expression from TISSUES for NME1-NME2 Gene

  • Eye(4.3)
  • Liver(2.3)
  • Blood(2.2)
  • Nervous system(2.2)
  • Lung(2.1)
  • Lymph node(2.1)
  • Heart(2)
genes like me logo Genes that share expression patterns with NME1-NME2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NME1-NME2 Gene

Orthologs for NME1-NME2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NME1-NME2 Gene

Organism Taxonomy Gene Similarity Type Details
oppossum
(Monodelphis domestica)
Mammalia NME2 35
  • 97 (a)
OneToMany
mouse
(Mus musculus)
Mammalia Gm20390 35
  • 97 (a)
ManyToMany
Nme2 35
  • 97 (a)
ManyToMany
Gm5566 16 34
  • 89.47 (n)
chimpanzee
(Pan troglodytes)
Mammalia LOC101059613 34
  • 96.35 (n)
-- 35
  • 92 (a)
ManyToMany
-- 35
  • 76 (a)
ManyToMany
cow
(Bos Taurus)
Mammalia NME2 35
  • 96 (a)
OneToMany
LOC101905864 34
  • 74.34 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NME2 35
  • 86 (a)
OneToMany
chicken
(Gallus gallus)
Aves NME2 35
  • 92 (a)
ManyToMany
NME1 35
  • 81 (a)
ManyToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 49 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii nme2b.2 35
  • 78 (a)
ManyToMany
nme2a 34 35
  • 71.36 (n)
CABZ01038708.1 35
  • 61 (a)
ManyToMany
fruit fly
(Drosophila melanogaster)
Insecta awd 34 35
  • 69.28 (n)
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP007120 34
  • 67.5 (n)
worm
(Caenorhabditis elegans)
Secernentea ndk-1 34 35
  • 62.28 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0D03696g 34
  • 60.96 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ABR096C 34
  • 59.91 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes YNK1 34 35 37
  • 58.94 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons NDPK1 34
  • 61.01 (n)
rice
(Oryza sativa)
Liliopsida Os10g0563700 34
  • 63.29 (n)
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 69 (a)
OneToMany
bread mold
(Neurospora crassa)
Ascomycetes NCU04202 34
  • 64.47 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes ndk1 34
  • 54.67 (n)
Species where no ortholog for NME1-NME2 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for NME1-NME2 Gene

ENSEMBL:
Gene Tree for NME1-NME2 (if available)
TreeFam:
Gene Tree for NME1-NME2 (if available)

Paralogs for NME1-NME2 Gene

Paralogs for NME1-NME2 Gene

(6) SIMAP similar genes for NME1-NME2 Gene using alignment to 2 proteins:

Pseudogenes.org Pseudogenes for NME1-NME2 Gene

genes like me logo Genes that share paralogs with NME1-NME2: view

Variants for NME1-NME2 Gene

Sequence variations from dbSNP and Humsavar for NME1-NME2 Gene

SNP ID Clin Chr 17 pos Sequence Context AA Info Type
rs1000099463 -- 51,164,192(+) TCAGG(A/G)TGGGG intron-variant, upstream-variant-2KB
rs1000321303 -- 51,168,650(+) TGGGC(A/G)ACAGA intron-variant
rs1000422584 -- 51,168,503(+) CAGAC(C/G)TTAGA intron-variant
rs1000492510 -- 51,151,603(+) AAATA(A/C)ATAAA upstream-variant-2KB
rs1000530944 -- 51,156,408(+) TGGGT(A/G)AGGCA intron-variant

Variation tolerance for NME1-NME2 Gene

Residual Variation Intolerance Score: 66.9% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NME1-NME2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NME1-NME2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NME1-NME2 Gene

Disorders for NME1-NME2 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NME1-NME2 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
bladder disease
  • urinary bladder disease
radiation cystitis
  • irradiation cystitis
- elite association - COSMIC cancer census association via MalaCards

Relevant External Links for NME1-NME2

Genetic Association Database (GAD)
NME1-NME2
Human Genome Epidemiology (HuGE) Navigator
NME1-NME2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NME1-NME2
genes like me logo Genes that share disorders with NME1-NME2: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NME1-NME2 Gene

Publications for NME1-NME2 Gene

  1. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 46 64
  2. Read-through transcript from NM23-H1 into the neighboring NM23-H2 gene encodes a novel protein, NM23-LV. (PMID: 16442775) Valentijn L.J. … Versteeg R. (Genomics 2006) 2 3 64
  3. Quantitative Proteomics Reveals Dynamic Interactions of the Minichromosome Maintenance Complex (MCM) in the Cellular Response to Etoposide Induced DNA Damage. (PMID: 25963833) Drissi R. … Boisvert F.M. (Mol. Cell Proteomics 2015) 3 64
  4. Panorama of ancient metazoan macromolecular complexes. (PMID: 26344197) Wan C. … Emili A. (Nature 2015) 3 64
  5. A high-throughput approach for measuring temporal changes in the interactome. (PMID: 22863883) Kristensen A.R. … Foster L.J. (Nat. Methods 2012) 3 64

Products for NME1-NME2 Gene

Sources for NME1-NME2 Gene

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