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Aliases & Descriptions for NME1
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases AWD 2 EC 2.7.4.6 3 GAAD 2 , 3 NB 2 NBS 2 NDPK-A 2 NDPKA 2 , 3 NM23 1 , 2 , 3 , 5 NM23-H1 1 , 2 OTTHUMP00000174772 2 nm23-H1 3
Descriptions Granzyme A-activated DNase 3 Metastasis inhibition factor nm23 3 NDK A 3 NDP kinase A 2 , 3 Tumor metastatic process-associated protein 3 non-metastatic cells 1, protein (NM23A) expressed in 2
Search outside databases for aliases for NME1 genePrevious GC identifers: GC17P048944 GC17P051712 GC17P049572 GC17P049705
Summaries for NME1 (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for NME1 : This gene (NME1) was identified because of its reduced mRNA transcript levels in highly metastaticcells. Nucleoside diphosphate kinase (NDK) exists as a hexamer composed of 'A' (encodedby this gene) and 'B' (encoded by NME2) isoforms. Mutations in this gene have beenidentified in aggressive neuroblastomas. Two transcript variants encoding different isoforms havebeen found for this gene. Co-transcription of this gene and the neighboring downstream gene (NME2)generates naturally-occurring transcripts (NME1-NME2), which encodes a fusion protein comprised ofsequence sharing identity with each individual gene product. [provided by RefSeq] UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531 Function : Major role in the synthesis of nucleoside triphosphates other than ATP. Possessesnucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesylpyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cellproliferation, differentiation and development, signal transduction, G protein-coupled receptorendocytosis, and gene expression. Required for neural development including neural patterning andcell fate determination. Has tumor metastasis-suppressive capacity
Gene Wiki entry for NME1
Genomic Location for NME1
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
SABiosciences )About This Section
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NME1 gene Entrez Gene cytogenetic band: 17q21.3 Ensembl cytogenetic band: 17q21.33 HGNC cytogenetic band: 17q21.33 NME1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure
GeneLoc location for GC17P046585:
(about GC identifiers )
Start:
46,585,919 bp from pter
End:
46,604,104 bp from pter
Size:
18,186 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000017.9 NT_010783.14 Proteins for NME1
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531 (See
protein sequence )Recommended Name: Nucleoside diphosphate kinase A Size : 152 amino acids; 17149 Da
Cofactor : Magnesium
Subunit : Hexamer of two different chains: A and B (A6, A5B, A4B2, A3B3, A2B4, AB5, B6). Interactswith SET and PRUNE
Subcellular location : Cytoplasm. Nucleus. Note=Cell-cycle dependent nuclear localization which canbe induced by interaction with Epstein-barr viral proteins or by degradation of the SET complex byGzmA
PDB structures from and Proteopedia : 1JXV (3D)
 1UCN (3D)
 2HVD (3D)
 2HVE (3D)
 
Secondary accessions : Q6FGK3 Q86XQ2Alternative splicing : 3 isoforms : P15531-1 P15531-2 P22392-2
Post-translational modifications:
The N-terminus is blocked1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_000260.1 NP_937818.1 ENSEMBL proteins: ENSP00000376895 ENSP00000376894 ENSP00000312446 ENSP00000337060 ENSP00000013034 ENSP00000365572 ENSP00000376892 ENSP00000376888 ENSP00000376890 ENSP00000376889 ENSP00000376887 ENSP00000376886 ENSP00000376880 ENSP00000376882 Human Recombinant Proteins               OriGene Purified Recombinant Human Protein: NME1 2 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for NME1: Assays for NME1:
Protein
Domains/ Families for NME1(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry P15531 ProtoNet protein and cluster: P15531
1 Blocks protein family : IPB001564 Nucleoside diphosphate kinase UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531 Similarity : Belongs to the NDK family
Gene Function for NME1
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
Sigma-Aldrich ,
RNAi Products ,
Clones , and
Q-PCR Products
from Invitrogen ,
Millipore ,
OriGene , and/or
Abnova ,
siRNAs from
Applied Biosystems ,
SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000269 Applied Biosystems Silencer ® siRNAs for NME1 Sigma-Aldrich siRNA and siRNA Panels for NME1 Sigma-Aldrich shRNA Panels and shRNA for NME1 Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000269                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000269                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000269  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_198175 UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531 Function : Major role in the synthesis of nucleoside triphosphates other than ATP. Possessesnucleoside-diphosphate kinase, serine/threonine-specific protein kinase, geranyl and farnesylpyrophosphate kinase, histidine protein kinase and 3'-5' exonuclease activities. Involved in cellproliferation, differentiation and development, signal transduction, G protein-coupled receptorendocytosis, and gene expression. Required for neural development including neural patterning andcell fate determination. Has tumor metastasis-suppressive capacity Catalytic activity : ATP + nucleoside diphosphate = ADP + nucleoside triphosphateEnzyme regulation : Autophosphorylation at His-118 increases serine/threonine protein kinaseactivity of the enzyme. Interaction with the SET complex inhibits exonuclease activity Enzyme Number (IUBMB): EC 2.7.4.6
Genatlas biochemistry entry for NME1 :non-metastatic cells 1,protein,with a nm23 nucleoside diphosphate kinase gene family,involved inthe phosphorylation of nucleoside diphosphates,with a reduced expression in tumor progression tothe metastatic phenotype,mutated in agressive neuroblastoma,expressed in lung carcinoma cell linesnot in normal lung,pyrimidine biosynthetic pathway
13 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Nme1) :5/10 Gene Ontology (GO) molecular function terms (links to tree view) (see all 10
):
About this table
Pathways & Interactions for NME1
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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2 Sigma-Aldrich "Your Favorite Gene" Pathways for NME1 (Your Favorite Gene powered by Ingenuity) Gene Network CentralTM Interacting Genes and Proteins Network for NME1 5/70 Interacting proteins for NME1 (ENSP00000365572 3 P15531 1 , 2 ) via UniProtKB, MINT, and/or STRING (see all 70
)About this table 5/9 Gene Ontology (GO) biological process terms (links to tree view) (see all 9
):
About this table
Drugs & Compounds for NME1 (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Browse Tocris compounds for NME1 10/28 Novoseek chemical compound relationships for NME1 gene (see all 28
)
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
histidine
38.75
17
10698688 (3), 12105213 (3), 9038158 (2), 12848344 (1) (see all 11 )
slex
31.92
23
9663428 (7), 15269984 (5), 8641989 (4)
17-(allylamino)-17-demethoxygeldanamycin
30.12
4
15684389 (1), 17022645 (1)
crcs
28.54
2
12883690 (1)
gtp
22.60
12
12145286 (2), 10611312 (2), 18470881 (1), 10082974 (1)
bgl ii
22.41
2
1377015 (1), 1684428 (1)
chi 2
14.09
3
10719723 (1), 9842967 (1), 12408341 (1)
pyrophosphate
14.00
1
9387150 (1)
glyceraldehyde 3-phosphate
12.35
3
9398045 (1), 10612659 (1), 7761450 (1)
progesterone
3.97
8
16145866 (2), 11360656 (1), 8519661 (1), 17975005 (1) (see all 6 )
About this table
Transcripts for NME1(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
Millipore , and/or
Abnova ,
siRNAs from Applied Biosystems ,
Sigma-Aldrich ,
shRNA from
Sigma-Aldrich ,
OriGene ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_000269 Sigma-Aldrich siRNA and siRNA Panels for NME1 Sigma-Aldrich shRNA Panels and shRNA for NME1 Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_000269 NM_198175
REFSEQ mRNAs for NME1 gene (2 alternative transcripts): NM_000269.2 NM_198175.1
Applied Biosystems TaqMan ® Gene Expression Assays: NM_000269 NM_198175
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_000269                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_000269                                  untagged cDNA clones in CMV expression vector (see all 2 ): NM_000269  
Additional cDNA sequence: AF487339.1 AK291105.1 AK309160.1 AK313448.1 AL360166.1 AL360191.1 BC000293.2 BC002476.2 BC018994.2 BC095458.1 BC107894.1 BC133029.1 BC133031.1 BT007045.1 CR541718.1 CR542104.1 CR542115.1 CR608209.1 CR610816.1 CR620528.1 CR620825.1 CR621859.1 CR626177.1 D28367.1 DQ109675.1 L16785.1 M36981.1 X17620.1 X58965.1 X73066.1
24/52 DOTS entries (see all 52
): DT.87001740 DT.100666998 DT.92467700 DT.97825132 DT.100667001 DT.95133979 DT.99954390 DT.99926493 DT.92467683 DT.101986310 DT.100667002 DT.91951035 DT.91888097 DT.100847325 DT.92041281 DT.99926485 DT.100741476 DT.97864707 DT.87017850 DT.92467701 DT.121184671 DT.92467662 DT.100667000 DT.100675075
24/233 AceView cDNA sequences (see all 233
):CA449399 BM762008 BQ897114 AI128227 BM473942 CD105922 BF036960 BQ232688 BM850750 CR620528 BM051035 CB163460 BM747087 AI139946 BC018994 BG388883 X17620 AI242293 BU181542 AA305102 BM552890 CR626177 BG202196 BX421668
highest scoring ESTs for NME1 :AL038662 X17620 AA564822 X73066 AA046312 AA046401 AA083177 AA083288 AA122205 AA130864
Unigene Cluster for NME1: Non-metastatic cells 1, protein (NM23A) expressed in Hs.463456 [show with all ESTs ] Unigene Representative Sequence: BG114681 GeneLoc Exon Structure 5/7 Alternative Splicing Database (ASD) splice patterns (SP) for NME1 (see all 7
) ExUns: 1a · 1b · 1c ^ 2 ^ 3a · 3b ^ 4a · 4b · 4c ^ 5 ^ 6a · 6b · 6c ^ 7a · 7b · 7c SP1 :       -   -         -     -     -         SP2 :       -   -   -       -     -     -         SP3 :       -   -   -       -         -         SP4 :         -         -     -             SP5 :       -   -   -       -     -            
About this scheme ECgene alternative splicing isoforms for NME1 14 Ensembl transcripts including schematic representations : ENST00000393199
ENST00000393198
ENST00000311032
ENST00000336097
ENST00000013034
ENST00000376392
ENST00000393196
ENST00000393192
ENST00000393194
ENST00000393193
ENST00000393191
ENST00000393190
ENST00000393183
ENST00000393185
Expression for NME1
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NME1 expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NME1 1 / 2 / 3
6 probe-sets matching NME1 gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: --SOURCE GeneReport for Unigene cluster: Hs.463456 Expression variation in blood from EXPOLDB for NME1
UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531 Tissue specificity : Isoform 1 is expressed in heart, brain, placenta, lung, liver, skeletal muscle,pancreas, spleen and thymus. Expressed in lung carcinoma cell lines but not in normal lungtissues. Isoform 2 is ubiquitously expressed and its expression is also related to tumordifferentiation. Isoform 3 is ubiquitously expressed
Orthologs for NME1
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NME1 gene from 5/15 species (see all 15
)
About this table Species with no ortholog for NME1 ENSEMBL Gene Tree for NME1 Paralogs for NME1 (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NME1 gene NME2P1 2 NME3 2 NME7 2 NME4 2 Pseudogenes 1 related pseudogene
SNPs/Variants for NME1 (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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--
Disorders & Mutations for NME1
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 156490 disorders : 256700 UniProtKB/Swiss-Prot: NDKA_HUMAN, P15531
This protein is found in reduced amount in tumor cells of high metastatic potential.Somatic mutations of NME1 are found in neuroblastoma. Increased NME1 in neuroblastoma iscorrelated with features of the disease that are associated with aggressive tumors. May thereforehave distinct if not opposite roles in different tumors
10/95 Novoseek disease relationships for NME1 gene (see all 95
)
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
metastasis
84.57
914
11289754 (7), 8418304 (6), 11179491 (6), 16739379 (6) (see all 99 )
tumors
70.97
714
7745027 (6), 10424391 (6), 9874452 (5), 15568401 (5) (see all 99 )
breast carcinoma
70.16
90
9070493 (5), 11280805 (3), 11866905 (3), 7990158 (3) (see all 58 )
melanoma
61.62
161
8912348 (6), 9167178 (5), 17696918 (5), 7829217 (5) (see all 63 )
carcinoma
60.87
139
18996649 (5), 10523705 (3), 9570214 (3), 10914829 (3) (see all 77 )
primary tumor
59.97
54
11268486 (4), 9143023 (3), 9949298 (3), 9194030 (3) (see all 29 )
colorectal carcinoma
59.91
66
11289754 (9), 16078572 (5), 8199988 (4), 7774480 (4) (see all 27 )
large cell lung cancer
58.70
4
17167724 (1), 18440302 (1), 15757527 (1)
ductal breast carcinoma
57.74
4
8386774 (1), 17642161 (1), 9042324 (1), 8912348 (1)
cancer
56.38
139
8931974 (4), 10794547 (3), 10403689 (3), 16425351 (3) (see all 93 )
About this table Human Gene Mutation Database : NME1 Genetic Association Database: NME1 Human Genome Epidemiology Navigator: NME1 (4 documents) Tumor Gene Database : NME1 Breast Cancer Gene Database : NME1
Medical News for NME1 (Possibly Related Articles in
Doctor's Guide )
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Publications for NME1 (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/747 PubMed articles for NME1 gene (see all 747
): Isolation and characterization of the human genomic locus coding for the putative metastasis control gene nm23-H1. (PubMed id 8270257) 1, 2, 3, 4 Dooley S.... Welter C. (1994) Tumor suppressor NM23-H1 is a granzyme A-activated DNase during CTL- mediated apoptosis, and the nucleosome assembly protein SET is its inhibitor. (PubMed id 12628186) 1, 3, 4 Fan Z.... Lieberman J. (2003) High levels of p19/nm23 protein in neuroblastoma are associated with advanced stage disease and with N-myc gene amplification. (PubMed id 2056128) 1, 3, 4 Hailat N.... Hanash S.J. (1991) Identification of genes (SPON2 and C20orf2) differentially expressed between cancerous and noncancerous lung cells by mRNA differential display. (PubMed id 10512675) 1, 3, 4 Manda R.... Yokota J. (1999) Site-directed mutagenesis of nm23-H1. Mutation of proline 96 or serine 120 abrogates its motility inhibitory activity upon transfection into human breast carcinoma cells. (PubMed id 8810265) 1, 3, 4 MacDonald N.J....Steeg P.S. (1996) Mutation in the nm23 gene is associated with metastasis in colorectal cancer. (PubMed id 7916650) 1, 3, 4 Wang L.... Banerjee S. (1993) EcoRI polymorphism of the metastasis-suppressor gene NME1 in Mexican patients with breast cancer. (PubMed id 16317582) 3, 6 Rubio S.A....Moguel M.C. (2006) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Isolation and characterization of a novel human NM23-H1B gene, a different transcript of NM23-H1. (PubMed id 12601555) 3, 4 Ni X....Mao Y. (2003) Nucleotide binding to nucleoside diphosphate kinases: X-ray structure of human NDPK-A in complex with ADP and comparison to protein kinases. (PubMed id 12972261) 3, 4 Chen Y.... Janin J. (2003)
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Specialized Databases showing NME1 (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for NME1 (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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