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Aliases for NMD3 Gene

Aliases for NMD3 Gene

  • NMD3 Ribosome Export Adaptor 2 3 5
  • HNMD3 3 4
  • 60S Ribosomal Export Protein NMD3 3
  • NMD3 Homolog (S. Cerevisiae) 2
  • NMD3 Homolog 3
  • CGI-07 3

External Ids for NMD3 Gene

Previous GeneCards Identifiers for NMD3 Gene

  • GC03P162422
  • GC03P160822
  • GC03P158337

Summaries for NMD3 Gene

Entrez Gene Summary for NMD3 Gene

  • Ribosomal 40S and 60S subunits associate in the nucleolus and are exported to the cytoplasm. The protein encoded by this gene is involved in the passage of the 60S subunit through the nuclear pore complex and into the cytoplasm. Several transcript variants exist for this gene, but the full-length natures of only two have been described to date. [provided by RefSeq, Feb 2016]

GeneCards Summary for NMD3 Gene

NMD3 (NMD3 Ribosome Export Adaptor) is a Protein Coding gene. Among its related pathways are Ribosome biogenesis in eukaryotes and RNA transport. GO annotations related to this gene include poly(A) RNA binding and ribosomal large subunit binding.

UniProtKB/Swiss-Prot for NMD3 Gene

  • Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Gene Wiki entry for NMD3 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NMD3 Gene

Genomics for NMD3 Gene

Regulatory Elements for NMD3 Gene

Enhancers for NMD3 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH03F161081 0.2 Ensembl 16.1 -22.8 -22796 1.4 IRF1 B3GALNT1 NMD3 SPTSSB GC03P161074
GH03F160413 0.4 ENCODE 12.1 -690.9 -690909 0.2 CTCF ZNF654 FOXA3 TRIM22 ZNF384 REST RAD21 RFX5 POLR2H KLF16 B3GAT3P1 NMD3 C3orf80 IL12A-AS1 IL12A GC03P160411 ENSG00000248710
GH03F161171 0.8 Ensembl ENCODE 11.2 +66.7 66705 0.4 SCRT2 JUN B3GALNT1 NMD3 PSMC1P7 GC03M161162 GC03P161155
GH03F161041 0.2 ENCODE 11 -62.5 -62521 1.2 SOX13 NFIA HLF NR2F1 FOXA3 MIER2 ZSCAN9 RAD21 NR2F2 TEAD3 B3GALNT1 NMD3 SPTSSB PSMC1P7 GC03P161074 PIR58593
GH03F160980 0.8 Ensembl ENCODE 11 -123.2 -123195 3.0 PKNOX1 ZFP64 INSM2 FEZF1 ZNF2 ZNF335 ZNF366 SCRT2 CREM ZNF202 B3GALNT1 SPTSSB NMD3 PIR58593 GC03P161074
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NMD3 on UCSC Golden Path with GeneCards custom track

Promoters for NMD3 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00001485660 205 1799 CTCF KLF1 TEAD4 MAX SIN3A ZBTB40 ZNF2 ZNF664 E2F1 CTBP1

Genomic Location for NMD3 Gene

Chromosome:
3
Start:
161,104,696 bp from pter
End:
161,253,532 bp from pter
Size:
148,837 bases
Orientation:
Plus strand

Genomic View for NMD3 Gene

Genes around NMD3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NMD3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NMD3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NMD3 Gene

Proteins for NMD3 Gene

  • Protein details for NMD3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96D46-NMD3_HUMAN
    Recommended name:
    60S ribosomal export protein NMD3
    Protein Accession:
    Q96D46
    Secondary Accessions:
    • D3DNM7
    • Q9Y2Z6

    Protein attributes for NMD3 Gene

    Size:
    503 amino acids
    Molecular mass:
    57603 Da
    Quaternary structure:
    • Found in a 60S ribosomal subunit export complex with RAN and XPO1. Interacts with XPO1. Associates with the 60S ribosomal subunit.

neXtProt entry for NMD3 Gene

Post-translational modifications for NMD3 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NMD3 Gene

Domains & Families for NMD3 Gene

Protein Domains for NMD3 Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NMD3 Gene

Graphical View of Domain Structure for InterPro Entry

Q96D46

UniProtKB/Swiss-Prot:

NMD3_HUMAN :
  • Belongs to the NMD3 family.
Family:
  • Belongs to the NMD3 family.
genes like me logo Genes that share domains with NMD3: view

No data available for Gene Families for NMD3 Gene

Function for NMD3 Gene

Molecular function for NMD3 Gene

UniProtKB/Swiss-Prot Function:
Acts as an adapter for the XPO1/CRM1-mediated export of the 60S ribosomal subunit.

Gene Ontology (GO) - Molecular Function for NMD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 12724356
GO:0030674 protein binding, bridging IDA 12773398
GO:0043023 ribosomal large subunit binding IDA 12724356
GO:0044822 poly(A) RNA binding IDA 22658674
genes like me logo Genes that share ontologies with NMD3: view
genes like me logo Genes that share phenotypes with NMD3: view

Animal Model Products

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NMD3 Gene

Localization for NMD3 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NMD3 Gene

Cytoplasm. Nucleus. Note=Shuttles between the nucleus/nucleolus and the cytoplasm in a XPO1/CRM1-dependent manner. {ECO:0000269 PubMed:12724356, ECO:0000269 PubMed:12773398}.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NMD3 Gene COMPARTMENTS Subcellular localization image for NMD3 gene
Compartment Confidence
nucleus 5
cytosol 3
cytoskeleton 1
extracellular 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NMD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005654 nucleoplasm IDA 12773398
GO:0005730 nucleolus IDA 12773398
GO:0005737 cytoplasm IDA 12724356
GO:0016020 membrane IDA 19946888
genes like me logo Genes that share ontologies with NMD3: view

Pathways & Interactions for NMD3 Gene

genes like me logo Genes that share pathways with NMD3: view

Pathways by source for NMD3 Gene

2 KEGG pathways for NMD3 Gene

Gene Ontology (GO) - Biological Process for NMD3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000055 ribosomal large subunit export from nucleus IMP 12773398
GO:0006810 transport IEA --
GO:0015031 protein transport IEA --
GO:1902680 positive regulation of RNA biosynthetic process IMP 23782956
GO:1904751 positive regulation of protein localization to nucleolus IMP 23782956
genes like me logo Genes that share ontologies with NMD3: view

No data available for SIGNOR curated interactions for NMD3 Gene

Transcripts for NMD3 Gene

Unigene Clusters for NMD3 Gene

NMD3 homolog (S. cerevisiae):
Representative Sequences:

Inhibitory RNA Products

Clone Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NMD3 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6 ^ 7a · 7b ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16 ^ 17
SP1: - - -
SP2: - - - -
SP3: - -
SP4: - - -
SP5:

Relevant External Links for NMD3 Gene

GeneLoc Exon Structure for
NMD3
ECgene alternative splicing isoforms for
NMD3

Expression for NMD3 Gene

mRNA expression in normal human tissues for NMD3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NMD3 Gene

This gene is overexpressed in Lung (52.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NMD3 Gene



Protein tissue co-expression partners for NMD3 Gene

NURSA nuclear receptor signaling pathways regulating expression of NMD3 Gene:

NMD3

SOURCE GeneReport for Unigene cluster for NMD3 Gene:

Hs.598836
genes like me logo Genes that share expression patterns with NMD3: view

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NMD3 Gene

Orthologs for NMD3 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NMD3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NMD3 34 35
  • 99.73 (n)
cow
(Bos Taurus)
Mammalia NMD3 34 35
  • 92.64 (n)
dog
(Canis familiaris)
Mammalia NMD3 34 35
  • 92.51 (n)
mouse
(Mus musculus)
Mammalia Nmd3 34 16 35
  • 91.39 (n)
rat
(Rattus norvegicus)
Mammalia Nmd3 34
  • 91.39 (n)
platypus
(Ornithorhynchus anatinus)
Mammalia NMD3 35
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NMD3 35
  • 66 (a)
OneToOne
chicken
(Gallus gallus)
Aves NMD3 34 35
  • 77 (n)
lizard
(Anolis carolinensis)
Reptilia NMD3 35
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nmd3 34
  • 75.48 (n)
zebrafish
(Danio rerio)
Actinopterygii nmd3 34 35
  • 69.65 (n)
rainbow trout
(Oncorhynchus mykiss)
Actinopterygii Omy.8390 34
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP005375 34
  • 56.18 (n)
fruit fly
(Drosophila melanogaster)
Insecta Nmd3 34 35
  • 56.04 (n)
worm
(Caenorhabditis elegans)
Secernentea T25G3.3 34 35
  • 56.03 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NMD3 34 35 37
  • 54.75 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A05159g 34
  • 54.62 (n)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER299C 34
  • 54.57 (n)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT2G03820 34
  • 54.09 (n)
rice
(Oryza sativa)
Liliopsida Os10g0573900 34
  • 46.76 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes nmd3 34
  • 54.68 (n)
sea squirt
(Ciona savignyi)
Ascidiacea CSA.6714 35
  • 54 (a)
OneToOne
bread mold
(Neurospora crassa)
Ascomycetes NCU08663 34
  • 49.75 (n)
Species where no ortholog for NMD3 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)

Evolution for NMD3 Gene

ENSEMBL:
Gene Tree for NMD3 (if available)
TreeFam:
Gene Tree for NMD3 (if available)

Paralogs for NMD3 Gene

Pseudogenes.org Pseudogenes for NMD3 Gene

genes like me logo Genes that share paralogs with NMD3: view

No data available for Paralogs for NMD3 Gene

Variants for NMD3 Gene

Sequence variations from dbSNP and Humsavar for NMD3 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type
rs193920996 Uncertain significance 161,235,138(+) AAAAA(C/T)TTTCT nc-transcript-variant, reference, missense
rs10715158 -- 161,253,564(+) GCATT(-/C)CCCCC downstream-variant-500B
rs111252419 -- 161,243,836(+) TAGTG(A/C)TAGTC intron-variant
rs111267349 -- 161,235,321(+) AAGAA(A/C)TTTCT intron-variant
rs111422658 -- 161,250,296(+) ATGAG(A/G)CAATT nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for NMD3 Gene

Variant ID Type Subtype PubMed ID
esv3598402 CNV loss 21293372
nsv1015063 CNV gain 25217958
nsv592128 CNV loss 21841781
nsv965228 CNV duplication 23825009

Variation tolerance for NMD3 Gene

Residual Variation Intolerance Score: 7.07% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.92; 35.71% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NMD3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NMD3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NMD3 Gene

Disorders for NMD3 Gene

Relevant External Links for NMD3

Genetic Association Database (GAD)
NMD3
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NMD3

No disorders were found for NMD3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NMD3 Gene

Publications for NMD3 Gene

  1. Coordinated nuclear export of 60S ribosomal subunits and NMD3 in vertebrates. (PMID: 12773398) Trotta C.R. … Dahlberg J.E. (EMBO J. 2003) 2 3 4 22 64
  2. Identification of novel human genes evolutionarily conserved in Caenorhabditis elegans by comparative proteomics. (PMID: 10810093) Lai C.-H. … Lin W.-C. (Genome Res. 2000) 2 3 4 64
  3. CRM1 and its ribosome export adaptor NMD3 localize to the nucleolus and affect rRNA synthesis. (PMID: 23782956) Bai B. … Laiho M. (Nucleus 2013) 2 3 64
  4. Biogenesis and nuclear export of ribosomal subunits in higher eukaryotes depend on the CRM1 export pathway. (PMID: 12724356) Thomas F. … Kutay U. (J. Cell Sci. 2003) 3 4 64
  5. The BioPlex Network: A Systematic Exploration of the Human Interactome. (PMID: 26186194) Huttlin E.L. … Gygi S.P. (Cell 2015) 3 64

Products for NMD3 Gene

Sources for NMD3 Gene

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