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Aliases for NLRP9 Gene

Aliases for NLRP9 Gene

  • NLR Family, Pyrin Domain Containing 9 2 3
  • NALP9 3 4 6
  • NOD6 3 4 6
  • Nucleotide-Binding Oligomerization Domain Protein 6 3 4
  • NACHT, Leucine Rich Repeat And PYD Containing 9 2 3
  • PYRIN And NACHT-Containing Protein 12 3 4
  • PAN12 3 4
  • Nucleotide-Binding Oligomerization Domain, Leucine Rich Repeat And Pyrin Domain Containing 9 3
  • Leucine Rich Repeat And Pyrin Domain Containing 9 2
  • NACHT, LRR And PYD Domains-Containing Protein 9 3
  • Nucleotide-Binding Oligomerization Domain 2
  • NACHT, LRR And PYD Containing Protein 9 3
  • CLR19.1 3

External Ids for NLRP9 Gene

Previous HGNC Symbols for NLRP9 Gene

  • NALP9

Previous GeneCards Identifiers for NLRP9 Gene

  • GC19M060912
  • GC19M056219
  • GC19M052531

Summaries for NLRP9 Gene

Entrez Gene Summary for NLRP9 Gene

  • The protein encoded by this gene belongs to the NALP protein family. Members of the NALP protein family typically contain a NACHT domain, a NACHT-associated domain (NAD), a C-terminal leucine-rich repeat (LRR) region, and an N-terminal pyrin domain (PYD). This protein may play a regulatory role in the innate immune system as similar family members belong to the signal-induced multiprotein complex, the inflammasome, that activates the pro-inflammatory caspases, caspase-1 and caspase-5. [provided by RefSeq, Jul 2008]

GeneCards Summary for NLRP9 Gene

NLRP9 (NLR Family, Pyrin Domain Containing 9) is a Protein Coding gene. An important paralog of this gene is NLRC3.

UniProtKB/Swiss-Prot for NLRP9 Gene

  • Involved in inflammation.

Gene Wiki entry for NLRP9 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NLRP9 Gene

Genomics for NLRP9 Gene

Regulatory Elements for NLRP9 Gene

Genomic Location for NLRP9 Gene

Start:
55,708,432 bp from pter
End:
55,738,402 bp from pter
Size:
29,971 bases
Orientation:
Minus strand

Genomic View for NLRP9 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NLRP9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NLRP9 Gene

Proteins for NLRP9 Gene

  • Protein details for NLRP9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7RTR0-NALP9_HUMAN
    Recommended name:
    NACHT, LRR and PYD domains-containing protein 9
    Protein Accession:
    Q7RTR0
    Secondary Accessions:
    • B2RN12
    • Q86W27

    Protein attributes for NLRP9 Gene

    Size:
    991 amino acids
    Molecular mass:
    113312 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for NLRP9 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NLRP9 Gene

Proteomics data for NLRP9 Gene at MOPED

Post-translational modifications for NLRP9 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NLRP9 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NLRP9 Gene

Domains for NLRP9 Gene

Gene Families for NLRP9 Gene

HGNC:
  • NLR :Nucleotide-binding domain and leucine rich repeat containing
IUPHAR :

Protein Domains for NLRP9 Gene

Suggested Antigen Peptide Sequences for NLRP9 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q7RTR0

UniProtKB/Swiss-Prot:

NALP9_HUMAN :
  • Q7RTR0
Domain:
  • Contains 1 DAPIN domain.
  • Contains 1 NACHT domain.
Family:
  • Belongs to the NLRP family.
Similarity:
  • Contains 6 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with NLRP9: view

Function for NLRP9 Gene

Molecular function for NLRP9 Gene

UniProtKB/Swiss-Prot Function:
Involved in inflammation.

Gene Ontology (GO) - Molecular Function for NLRP9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
genes like me logo Genes that share ontologies with NLRP9: view

Animal Model Products

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NLRP9

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NLRP9 Gene

Localization for NLRP9 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NLRP9 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NLRP9 Gene COMPARTMENTS Subcellular localization image for NLRP9 gene
Compartment Confidence
cytosol 3
endoplasmic reticulum 1
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NLRP9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
genes like me logo Genes that share ontologies with NLRP9: view

Pathways for NLRP9 Gene

SuperPathways for NLRP9 Gene

No Data Available

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for NLRP9 Gene

Gene Ontology (GO) - Biological Process for NLRP9 Gene

None

No data available for Pathways by source for NLRP9 Gene

Transcripts for NLRP9 Gene

mRNA/cDNA for NLRP9 Gene

(4) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(8) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NLRP9 Gene

NLR family, pyrin domain containing 9:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NLRP9

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NLRP9 Gene

No ASD Table

Relevant External Links for NLRP9 Gene

GeneLoc Exon Structure for
NLRP9
ECgene alternative splicing isoforms for
NLRP9

Expression for NLRP9 Gene

mRNA expression in normal human tissues for NLRP9 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for NLRP9 Gene

This gene is overexpressed in Breast (66.0).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for NLRP9 Gene

SOURCE GeneReport for Unigene cluster for NLRP9 Gene Hs.661568

genes like me logo Genes that share expressions with NLRP9: view

Expression partners for NLRP9 Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NLRP9 Gene

Orthologs for NLRP9 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NLRP9 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NLRP9 35
  • 72.01 (n)
  • 60.04 (a)
NLRP9 36
  • 60 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NLRP9 35
  • 77.24 (n)
  • 68.19 (a)
NLRP9 36
  • 61 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nlrp9b 35
  • 61.65 (n)
  • 46.57 (a)
Nlrp9b 16
Nlrp9a 36
  • 45 (a)
OneToMany
Nlrp9b 36
  • 45 (a)
OneToMany
Nlrp9c 36
  • 45 (a)
OneToMany
chimpanzee
(Pan troglodytes)
Mammalia NLRP9 35
  • 96.61 (n)
  • 95.93 (a)
NLRP9 36
  • 99 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nlrp9 35
  • 62.78 (n)
  • 48.16 (a)
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 28 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 29 (a)
OneToMany
Species with no ortholog for NLRP9:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NLRP9 Gene

ENSEMBL:
Gene Tree for NLRP9 (if available)
TreeFam:
Gene Tree for NLRP9 (if available)

Paralogs for NLRP9 Gene

Selected SIMAP similar genes for NLRP9 Gene using alignment to 1 proteins:

Pseudogenes.org Pseudogenes for NLRP9 Gene

genes like me logo Genes that share paralogs with NLRP9: view

Variants for NLRP9 Gene

Sequence variations from dbSNP and Humsavar for NLRP9 Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs193384 -- 55,729,899(+) TCATC(A/G)AGGCT reference, synonymous-codon
rs299162 -- 55,731,278(+) ggagt(C/T)ccctc intron-variant
rs734159 -- 55,737,603(+) TCTGG(A/T)CAAAA intron-variant
rs755804 -- 55,738,079(-) GATGA(C/T)GGGGC intron-variant
rs899141 -- 55,738,004(-) CATCA(A/G)ATGAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NLRP9 Gene

Variant ID Type Subtype PubMed ID
nsv833882 CNV Loss 17160897
nsv2554 CNV Insertion 18451855
nsv510927 CNV Complex 20534489
nsv912505 CNV Gain 21882294
esv27102 CNV Gain 19812545
esv1008459 CNV Insertion 20482838
nsv912506 CNV Gain 21882294
dgv1132e1 CNV Complex 17122850
nsv9771 CNV Loss 18304495

Relevant External Links for NLRP9 Gene

HapMap Linkage Disequilibrium report
NLRP9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NLRP9 Gene

Disorders for NLRP9 Gene

Relevant External Links for NLRP9

Genetic Association Database (GAD)
NLRP9
Human Genome Epidemiology (HuGE) Navigator
NLRP9

No disorders were found for NLRP9 Gene.

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES , Novoseek inferred disease relationships and Genatlas for NLRP9 Gene

Publications for NLRP9 Gene

  1. NALPs: a novel protein family involved in inflammation. (PMID: 12563287) Tschopp J. … Burns K. (Nat. Rev. Mol. Cell Biol. 2003) 2 3 4
  2. NODs: intracellular proteins involved in inflammation and apoptosis. (PMID: 12766759) Inohara N. … Nunez G. (Nat. Rev. Immunol. 2003) 3 4
  3. The genetics of NOD-like receptors in Crohn's disease. (PMID: 20403135) Cummings J.R. … Jewell D.P. (Tissue Antigens 2010) 3 48
  4. Common genetic variation and antidepressant efficacy in major depressive disorder: a meta-analysis of three genome-wide pharmacogenetic studies. (PMID: 23377640) (Am J Psychiatry 2013) 3
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 4

Products for NLRP9 Gene

Sources for NLRP9 Gene

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