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Aliases for NLRC5 Gene

Aliases for NLRC5 Gene

  • NLR Family, CARD Domain Containing 5 2 3 5
  • Nucleotide-Binding Oligomerization Domain Protein 4 3 4
  • Caterpiller Protein 16.1 3 4
  • NOD-Like Receptor C5 2 3
  • CLR16.1 3 4
  • NOD27 3 4
  • NOD4 3 4
  • Nucleotide-Binding Oligomerization Domain, Leucine Rich Repeat And CARD Domain Containing 5 3
  • Nucleotide-Binding Oligomerization Domain Protein 27 4
  • Leucine Rich Repeat And CARD Domain Containing 5 2
  • Nucleotide-Binding Oligomerization Domains 27 3
  • Nucleotide-Binding Oligomerization Domain 2

External Ids for NLRC5 Gene

Previous GeneCards Identifiers for NLRC5 Gene

  • GC16P055581
  • GC16P042892

Summaries for NLRC5 Gene

Entrez Gene Summary for NLRC5 Gene

  • This gene encodes a member of the caspase recruitment domain-containing NLR family. This gene plays a role in cytokine response and antiviral immunity through its inhibition of NF-kappa-B activation and negative regulation of type I interferon signaling pathways. [provided by RefSeq, Oct 2011]

GeneCards Summary for NLRC5 Gene

NLRC5 (NLR Family, CARD Domain Containing 5) is a Protein Coding gene. Diseases associated with NLRC5 include Acute Endometritis. Among its related pathways are Immune System and RIG-I/MDA5 mediated induction of IFN-alpha/beta pathways. GO annotations related to this gene include RNA polymerase II core promoter sequence-specific DNA binding. An important paralog of this gene is CIITA.

UniProtKB/Swiss-Prot for NLRC5 Gene

  • Probable regulator of the NF-kappa-B and type I interferon signaling pathways. May also regulate the type II interferon signaling pathway. Plays a role in homeostatic control of innate immunity and in antiviral defense mechanisms.

Gene Wiki entry for NLRC5 Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NLRC5 Gene

Genomics for NLRC5 Gene

Regulatory Elements for NLRC5 Gene

Enhancers for NLRC5 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NLRC5 on UCSC Golden Path with GeneCards custom track

Promoters for NLRC5 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NLRC5 on UCSC Golden Path with GeneCards custom track

Genomic Location for NLRC5 Gene

Chromosome:
16
Start:
56,989,485 bp from pter
End:
57,083,531 bp from pter
Size:
94,047 bases
Orientation:
Plus strand

Genomic View for NLRC5 Gene

Genes around NLRC5 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NLRC5 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NLRC5 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NLRC5 Gene

Proteins for NLRC5 Gene

  • Protein details for NLRC5 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q86WI3-NLRC5_HUMAN
    Recommended name:
    Protein NLRC5
    Protein Accession:
    Q86WI3
    Secondary Accessions:
    • B5MEF1
    • C9JMD8
    • Q6P4A6
    • Q86VM7
    • Q8NF42
    • Q8TEE2
    • Q8TEJ1
    • Q969L7

    Protein attributes for NLRC5 Gene

    Size:
    1866 amino acids
    Molecular mass:
    204595 Da
    Quaternary structure:
    • Interacts with CHUK and IKBKB; prevents CHUK and IKBKB phosphorylation and inhibits their kinase activity. Interacts with DDX58 and IFIH1; blocks the interaction of MAVS to DDX58.
    SequenceCaution:
    • Sequence=BAB55096.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB55098.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB85008.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for NLRC5 Gene

neXtProt entry for NLRC5 Gene

Proteomics data for NLRC5 Gene at MOPED

Post-translational modifications for NLRC5 Gene

  • Ubiquitination at Lys 989, Lys 1099, and Lys 1349
  • Modification sites at PhosphoSitePlus

Antibody Products

No data available for DME Specific Peptides for NLRC5 Gene

Domains & Families for NLRC5 Gene

Gene Families for NLRC5 Gene

HGNC:
IUPHAR :

Suggested Antigen Peptide Sequences for NLRC5 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q86WI3

UniProtKB/Swiss-Prot:

NLRC5_HUMAN :
  • Contains 1 NACHT domain.
  • Belongs to the NLRP family.
  • Contains 26 LRR (leucine-rich) repeats.
Domain:
  • Contains 1 NACHT domain.
Family:
  • Belongs to the NLRP family.
Similarity:
  • Contains 26 LRR (leucine-rich) repeats.
genes like me logo Genes that share domains with NLRC5: view

Function for NLRC5 Gene

Molecular function for NLRC5 Gene

UniProtKB/Swiss-Prot Function:
Probable regulator of the NF-kappa-B and type I interferon signaling pathways. May also regulate the type II interferon signaling pathway. Plays a role in homeostatic control of innate immunity and in antiviral defense mechanisms.
UniProtKB/Swiss-Prot Induction:
By IFNG/IFN-gamma.

Phenotypes for NLRC5 Gene

genes like me logo Genes that share phenotypes with NLRC5: view

Animal Models for NLRC5 Gene

MGI Knock Outs for NLRC5:

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for NLRC5 Gene

Localization for NLRC5 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NLRC5 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NLRC5 Gene COMPARTMENTS Subcellular localization image for NLRC5 gene
Compartment Confidence
cytosol 5
nucleus 5
cytoskeleton 2

No data available for Gene Ontology (GO) - Cellular Components for NLRC5 Gene

Pathways & Interactions for NLRC5 Gene

genes like me logo Genes that share pathways with NLRC5: view

Gene Ontology (GO) - Biological Process for NLRC5 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032088 negative regulation of NF-kappaB transcription factor activity IDA 20434986
GO:0043549 regulation of kinase activity IDA 20434986
GO:0045345 positive regulation of MHC class I biosynthetic process IDA 20639463
GO:0051607 defense response to virus IEP 20061403
genes like me logo Genes that share ontologies with NLRC5: view

No data available for SIGNOR curated interactions for NLRC5 Gene

Drugs & Compounds for NLRC5 Gene

No Compound Related Data Available

Transcripts for NLRC5 Gene

Unigene Clusters for NLRC5 Gene

NLR family, CARD domain containing 5:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NLRC5 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4a · 4b · 4c ^ 5a · 5b ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15 ^ 16a · 16b ^ 17 ^ 18a · 18b ^ 19 ^ 20 ^ 21 ^
SP1: -
SP2: - - -
SP3: - -
SP4: -
SP5:
SP6:
SP7:
SP8:
SP9:

ExUns: 22 ^ 23 ^ 24 ^ 25 ^ 26a · 26b ^ 27 ^ 28 ^ 29 ^ 30 ^ 31 ^ 32 ^ 33 ^ 34 ^ 35 ^ 36 ^ 37 ^ 38 ^ 39 ^ 40 ^ 41 ^ 42 ^ 43 ^ 44 ^ 45 ^ 46a ·
SP1: - -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:

ExUns: 46b · 46c ^ 47 ^ 48a · 48b
SP1: -
SP2:
SP3:
SP4:
SP5:
SP6:
SP7:
SP8:
SP9:

Relevant External Links for NLRC5 Gene

GeneLoc Exon Structure for
NLRC5
ECgene alternative splicing isoforms for
NLRC5

Expression for NLRC5 Gene

mRNA expression in normal human tissues for NLRC5 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NLRC5 Gene

This gene is overexpressed in Whole Blood (x10.1) and Spleen (x4.7).

Protein differential expression in normal tissues from HIPED for NLRC5 Gene

This gene is overexpressed in Lung (42.1) and Monocytes (15.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for NLRC5 Gene



SOURCE GeneReport for Unigene cluster for NLRC5 Gene Hs.528836

mRNA Expression by UniProt/SwissProt for NLRC5 Gene

Q86WI3-NLRC5_HUMAN
Tissue specificity: Expressed in spleen, thymus, lung, brain, tonsil, heart and prostate.
genes like me logo Genes that share expression patterns with NLRC5: view

Protein tissue co-expression partners for NLRC5 Gene

- Elite partner

Primer Products

Orthologs for NLRC5 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NLRC5 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NLRC5 35
  • 81.51 (n)
  • 72.94 (a)
NLRC5 36
  • 71 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NLRC5 35
  • 81.53 (n)
  • 74.61 (a)
NLRC5 36
  • 74 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nlrc5 35
  • 70.59 (n)
  • 61.7 (a)
Nlrc5 16
Nlrc5 36
  • 62 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NLRC5 35
  • 96.65 (n)
  • 95.69 (a)
oppossum
(Monodelphis domestica)
Mammalia NLRC5 36
  • 46 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NLRC5 36
  • 41 (a)
OneToOne
chicken
(Gallus gallus)
Aves NLRC5 35
  • 52.9 (n)
  • 41.01 (a)
NLRC5 36
  • 38 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NLRC5 36
  • 34 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101730474 35
  • 47.13 (n)
  • 36.36 (a)
zebrafish
(Danio rerio)
Actinopterygii si:ch211-122c9.5 35
  • 42.74 (n)
  • 30.14 (a)
NLRC5 36
  • 28 (a)
OneToOne
Species with no ortholog for NLRC5:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NLRC5 Gene

ENSEMBL:
Gene Tree for NLRC5 (if available)
TreeFam:
Gene Tree for NLRC5 (if available)

Paralogs for NLRC5 Gene

Paralogs for NLRC5 Gene

genes like me logo Genes that share paralogs with NLRC5: view

Variants for NLRC5 Gene

Sequence variations from dbSNP and Humsavar for NLRC5 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs16965150 - 57,025,572(+) CATCT(C/T)GGACC nc-transcript-variant, upstream-variant-2KB, reference, missense
rs9938543 - 57,026,301(+) CTTGC(C/T)CACCT nc-transcript-variant, upstream-variant-2KB, reference, missense
rs28438857 - 57,026,441(+) GCGTC(C/T)GCACA nc-transcript-variant, upstream-variant-2KB, reference, missense
rs35534915 - 57,033,624(+) GGAAA(A/G)TGACG nc-transcript-variant, reference, missense
rs289723 - 57,046,616(-) GCGCT(G/T)ACGGA intron-variant, nc-transcript-variant, reference, missense

Structural Variations from Database of Genomic Variants (DGV) for NLRC5 Gene

Variant ID Type Subtype PubMed ID
esv2676366 CNV Deletion 23128226
nsv827683 CNV Loss 20364138
esv1676058 CNV Insertion 17803354
esv1010488 CNV Gain 20482838
nsv906723 CNV Loss 21882294
esv2714520 CNV Deletion 23290073
esv2714521 CNV Deletion 23290073
esv2132758 CNV Deletion 18987734
esv2254792 CNV Deletion 18987734
esv2675650 CNV Deletion 23128226
esv2714522 CNV Deletion 23290073
esv2714523 CNV Deletion 23290073

Variation tolerance for NLRC5 Gene

Residual Variation Intolerance Score: 11.2% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.84; 73.92% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NLRC5 Gene

Human Gene Mutation Database (HGMD)
NLRC5

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NLRC5 Gene

Disorders for NLRC5 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NLRC5 Gene - From: DISEASES

Disorder Aliases PubMed IDs
acute endometritis
- elite association - COSMIC cancer census association via MalaCards
Search NLRC5 in MalaCards View complete list of genes associated with diseases

Relevant External Links for NLRC5

Genetic Association Database (GAD)
NLRC5
Human Genome Epidemiology (HuGE) Navigator
NLRC5
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NLRC5
genes like me logo Genes that share disorders with NLRC5: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NLRC5 Gene

Publications for NLRC5 Gene

  1. Regulation of cryopyrin/Pypaf1 signaling by pyrin, the familial Mediterranean fever gene product. (PMID: 12615073) Dowds T.A. … Nunez G. (Biochem. Biophys. Res. Commun. 2003) 2 3 4 67
  2. Respiratory Syncytial Virus Infection Upregulates NLRC5 and Major Histocompatibility Complex Class I Expression through RIG-I Induction in Airway Epithelial Cells. (PMID: 25972545) Guo X. … Li E. (J. Virol. 2015) 3
  3. Reversible ubiquitination shapes NLRC5 function and modulates NF-I_B activation switch. (PMID: 26620909) Meng Q. … Cui J. (J. Cell Biol. 2015) 3
  4. Unusual structural features revealed by the solution NMR structure of the NLRC5 caspase recruitment domain. (PMID: 24815518) Gutte P.G. … Zerbe O. (Biochemistry 2014) 3
  5. The N-terminal domain of NLRC5 confers transcriptional activity for MHC class I and II gene expression. (PMID: 25127861) Neerincx A. … Kufer T.A. (J. Immunol. 2014) 3

Products for NLRC5 Gene

Sources for NLRC5 Gene

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