NLRC3 Gene
protein-coding GIFtS: 44
GCID: GC16M003592
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NLR family, CARD domain containing 3
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Aliases
for NLRC3 gene
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc,
7Ensembl,
8DME,
9miRBase,
and/or 10fRNAdb)
About This Section
|
| Aliases |
|---|
| NLR Family, CARD Domain Containing 31 2 | | FLJ003481 | | CLR16.21 2 3 | | NOD-Like Receptor C32 | | NOD31 2 3 | | Nucleotide-Binding Oligomerization Domain, Leucine Rich Repeat And CARD DomainContaining 32 | | Caterpiller Protein 16.22 3 | | Protein NLRC32 | | CARD15-Like Protein2 3 | | Nucleotide-Binding Oligomerization Domain Protein 33 |
Export aliases for NLRC3 gene to outside databasesPrevious GC identifers: GC16M003531 GC16M003591 |
Summaries
for NLRC3 gene(According to Entrez Gene,
Tocris Bioscience,
Wikipedia's
Gene Wiki,
PharmGKB,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
|
Entrez Gene summary for NLRC3:
The protein encoded by this gene is a cytosolic regulator of innate immunity. The encoded protein contains severalleucine-rich repeat domains and may be involved in regulating T-cell activation. Two transcript variants, one proteincoding and the other non-protein coding, have been found for this gene. (provided by RefSeq, Feb 2013)
UniProtKB/Swiss-Prot: NLRC3_HUMAN, Q7RTR2Function: May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated afterT-cell stimulation. Delays degradation of NFKBIA/IKBA
Gene Wiki entry for NLRC3
|
Genomic Views
for NLRC3 gene
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69),
Regulatory elements and Epigenetics data according to
QIAGEN,
SABiosciences, and/or
SwitchGear Genomics)
About This Section
| RefSeq DNA sequence:- NC_000016.9 NC_018927.1 NT_010393.16
Regulatory elements:
 SABiosciences Regulatory transcription factor binding sites in the NLRC3 gene promoter:
c-Fos AP-1 HSF2 ATF-2 ZID c-Jun
Other transcription factors
Search SABiosciences Chromatin IP Primers for NLRC3
Epigenetics:
| | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NLRC3 |
Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track
Entrez Gene cytogenetic band: 16p13.3 Ensembl cytogenetic band: 16p13.3 HGNC cytogenetic band: 16p13.3NLRC3 Gene in genomic location: bands according to Ensembl, locations according to
 (and/or Entrez Gene and/or Ensembl if different)
GeneLoc information about chromosome 16 GeneLoc Exon Structure GeneLoc location for GC16M003592: view genomic region
(about GC identifiers)
Start:
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3,589,033 bp from pter |
End:
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3,627,401 bp from pter |
Size:
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38,369 bases |
Orientation:
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minus strand |
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Proteins
for NLRC3 gene
(According to
1UniProtKB,
HORDE,
neXtProt,
Ensembl,
and/or Reactome,
Modification sites according to 2PhosphoSitePlus,
Specific Peptides from DME,
Protein expression images according to data from SPIRE MOPED and PaxDb,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from
EMD Millipore,
R&D Systems,
GenScript,
Enzo Life Sciences,
OriGene,
Novus Biologicals,
Sino Biological,
ProSpec, and/or
Uscn,
Biochemical Assays by
EMD Millipore,
R&D Systems,
OriGene,
GenScript,
Cell Signaling Technology,
Enzo Life Sciences, and/or
Uscn,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene,
Antibodies by
EMD Millipore,
R&D Systems,
GenScript,
Cell Signaling Technology,
OriGene,
Novus Biologicals,
Thermo Fisher Scientific,
Abcam, and/or
Uscn)
About This Section
|
UniProtKB/Swiss-Prot: NLRC3_HUMAN, Q7RTR2 (See
protein sequence)Recommended Name: Protein NLRC3 Size: 1065 amino acids; 114658 Da
Subcellular location: Cytoplasm
Sequence caution: Sequence=BAC03412.1; Type=Erroneous initiation;
Secondary accessions: Q5EY36 Q8NF48 Q8NI01 Q8NI02 Q8TEL3Alternative splicing: 4 isoforms: Q7RTR2-1 Q7RTR2-2 Q7RTR2-3 Q7RTR2-4 (No experimental confirmation available)Explore the universe of human proteins at neXtProt for NLRC3: NX_Q7RTR2
Post-translational modifications:
View modification sites using PhosphoSitePlus2View neXtProt modification sites for NX_Q7RTR2
NLRC3 Protein expression data from MOPED and PaxDb: About this image 
REFSEQ proteins: NP_849172.2
ENSEMBL proteins: ENSP00000461099 ENSP00000414415 ENSP00000352039 ENSP00000301749 ENSP00000323897
Human Recombinant Protein Products:
Gene Ontology (GO): 1 cellular component term (GO ID links to tree view): About this table
NLRC3 for ontologies About GeneDecksing
NLRC3 Antibody Products:
Assay Products for NLRC3: |
Protein
Domains /
Families
for NLRC3 gene(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
|
NLRC3 for domains About GeneDecksing
1 InterPro domain/family:Graphical View of Domain Structure for InterPro Entry Q7RTR2ProtoNet protein and cluster: Q7RTR2 1 Blocks protein family: IPB002345 Lipocalin signature
UniProtKB/Swiss-Prot: NLRC3_HUMAN, Q7RTR2Similarity: Belongs to the NLRP familySimilarity: Contains 16 LRR (leucine-rich) repeatsSimilarity: Contains 1 NACHT domain |
Function
for NLRC3 gene
(According to 1UniProtKB,
Genatlas,
LifeMap Discovery™,
IUBMB, and/or
2DME,
Human phenotypes from GenomeRNAi,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene,
RNAi from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
microRNA from QIAGEN,
Gene Editing from DNA2.0,
Clones from EMD Millipore,
OriGene,
SwitchGear Genomics,
GenScript,
Sino Biological,
DNA2.0,
and Vector BioLabs,
Cell Lines from GenScript,
LifeMap BioReagents,
In Situ Hybridization Assays from Advanced Cell Diagnostics,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene.)
About This Section
|
Function Summary:
UniProtKB/Swiss-Prot: NLRC3_HUMAN, Q7RTR2Function: May modulate T-cell activation. Decreases the transcription of genes that are normally up-regulated afterT-cell stimulation. Delays degradation of NFKBIA/IKBAInduction: Down-regulated upon T-cell activation
Clone
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OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NLRC3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
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In Situ Assay
Products: |
 | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NLRC3 |
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view): About this table | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0003674 | molecular_function |
ND | -- | | GO:0005524 | ATP binding |
IEA | -- |
NLRC3 for ontologies About GeneDecksing
Animal Models:
Mouse knock-out Nlrc3tm1Bhk for NLRC3
4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nlrc3):
NLRC3 for phenotypes About GeneDecksing
|
Pathways & Interactions
for NLRC3 gene
(Pathways according to
EMD Millipore,
R&D Systems,
Cell Signaling Technology,
KEGG,
PharmGKB,
BioSystems,
Reactome,
Tocris Bioscience,
GeneGo (Thomson Reuters),
QIAGEN,
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Interaction Networks according to
SABiosciences,
and/or STRING,
Interactions according to 1UniProtKB,
2MINT,
3I2D, and/or
4STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene).
About This Section
|
Interactions:
Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NLRC3
STRING Interaction
Network Preview (showing 1 interactants - click image to see more details)
1 Interacting protein for NLRC3 (Q7RTR23 ENSP000004144154) via UniProtKB, MINT, STRING, and/or I2DAbout this table
Gene Ontology (GO): 3 biological process terms (GO ID links to tree view): About this table
NLRC3 for ontologies About GeneDecksing
|
Drugs & Compounds
for NLRC3 gene(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
EMD Millipore, Tocris Bioscience
HMDB,
BitterDB, and/or
Novoseek, and Drugs according to
DrugBank,
Enzo Life Sciences, and/or
PharmGKB, with drugs/clinical trials/news
search links to CenterWatch)
About This Section
|
 Browse Tocris compounds for NLRC3
Search CenterWatch for drugs/clinical trials and news about NLRC3
|
Transcripts
for NLRC3 gene(Secondary structures according to
fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
transcript ids from Ensembl
with links to UCSC,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from
EMD Millipore,
siRNAs from
OriGene,
QIAGEN,
shRNA from
OriGene,
microRNA from QIAGEN,
Tagged/untagged cDNA clones from
OriGene,
SwitchGear Genomics,
GenScript,
DNA2.0,
Vector BioLabs,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN
)
About This Section
|
REFSEQ mRNAs for NLRC3 gene: NM_178844.2 Unigene Cluster for NLRC3: NLR family, CARD domain containing 3 Hs.592091 [show with all ESTs]Unigene Representative Sequence: AK09043110 Ensembl transcripts including schematic representations, and UCSC links where relevant: ENST00000572229(uc010btn.3) ENST00000419350 ENST00000574758 ENST00000577133
ENST00000570873(uc010bto.1) ENST00000570426 ENST00000448023 ENST00000359128
ENST00000301749 ENST00000324659
Clone
Products: | | OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NLRC3 (see all 2)
OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NLRC3
OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling
| | | GenScript: all cDNA clones in your preferred vector: NLRC3 (NM_178844) | | | DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NLRC3 | | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NLRC3 |
Additional cDNA sequence: AF501291.1 AF501292.1 AK074109.1 AK090431.1 AK090476.1 AK125583.1 AY601811.1 BC027864.1 FJ889357.1 4 DOTS entries: DT.453510 DT.92414904 DT.101971153 DT.91808239 24/84 AceView cDNA sequences (see all 84): F11880 CF138331 BE674491 AA694067 AI868576 BK001112 AI199387 AI381465 NM_178844 BC027864 AI139177 AI090037 AI804488 CF138406 AK074109 AI793342 F11200 AI378880 AI284346 AI240419 BF869650 AI683785 BQ024950 AI243707
GeneLoc Exon Structure
2 Alternative Splicing Database (ASD) splice patterns (SP) for NLRC3 About this scheme
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3 | ^ | 4a | · | 4b | · | 4c | ^ | 5a | · | 5b | · | 5c | ^ | 6 | ^ | 7 | ^ | 8 | ^ | 9 | ^ | 10 | ^ | 11 | ^ | 12 | ^ | 13 | ^ | 14 | ^ | 15 | ^ | 16 | ^ | 17 | ^ | 18 | ^ | 19 | ^ | 20 |
|---|
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| SP1: | | | | | - | | - | | | | | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
| SP2: | | | | | | | | | - | | | | - | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |
ECgene alternative splicing isoforms for NLRC3
|
Expression
for NLRC3 gene
(RNA expression data according to
H-InvDB,
NONCODE,
miRBase, and
RNAdb,
Expression images according to data from
BioGPS,
Illumina Human BodyMap, and
CGAP
SAGE,
Sets of similar genes according to GeneDecks,
in vivo and in vitro expression data from LifeMap Discovery™,
plus additional links to
Genevestigator, and/or
SOURCE, and/or
BioGPS, and/or
UniProtKB,
PCR Arrays from
SABiosciences,
Primers from
OriGene,
SABiosciences, and/or
QIAGEN,
In Situ Hybridization Assays from Advanced Cell Diagnostics)
About This Section
| NLRC3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS
CGAP TAG: AAAAACACAA
About this image
See NLRC3 Protein Expression from SPIRE MOPED and PaxDB
Genevestigator expression for NLRC3
SOURCE GeneReport for Unigene cluster: Hs.592091
UniProtKB/Swiss-Prot: NLRC3_HUMAN, Q7RTR2Tissue specificity: Detected in peripheral blood mononuclear cells
SABiosciences Custom PCR Arrays for NLRC3
Primer
Products: | | OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NLRC3
Browse OriGene validated miRNA SYBR primer pairs
| | | SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NLRC3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NLRC3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NLRC3 | In Situ
Assay Products: |
| Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NLRC3 |
Orthologs
for NLRC3 gene
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
,
5MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase,
and/or
6Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam)
About This Section
|
This gene was present in the common ancestor of chordates.
Orthologs for NLRC3 gene from 3/6 species (see all 6) About this table
ENSEMBL Gene Tree for NLRC3 (if available)
TreeFam Gene Tree for NLRC3 (if available) |
Paralogs
for NLRC3 gene(Paralogs according to
1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
About This Section
| -- |
Genomic Variants
for NLRC3 gene(SNPs/Variants according to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE,
UniProtKB, and
DNA2.0,
Linkage Disequilibrium by HapMap,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB), Blood group antigen gene mutations by BGMUT,
Resequencing Primers from QIAGEN,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
About This Section
|
| Genomic Data | Transcription Related Data | Allele Frequencies | | SNP ID | Valid | Clinical
significance | Chr 16 pos | Sequence | # | AA
Chg | Type | More | # | Allele
freq | Pop | Total
sample | More |
|---|
HapMap Linkage Disequilibrium report for NLRC3 (3589033 - 3627401 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
Database of Genomic Variants (DGV): 5 variations for NLRC3
5 CNVs: 49713 49714 49716 49715 49709 | SABiosciences Cancer Mutation PCR Assays |
| | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NLRC3 |
|
Disorders
/ Diseases
for NLRC3 gene
(in which this Gene is Involved, According to MalaCards,
OMIM, UniProtKB,
the University of Copenhagen DISEASES
database,
Genatlas, GeneTests,
GAD,
HuGE Navigator,
and/or TGDB.)
About This Section
|
NLRC3 for disorders About GeneDecksing
2  diseases for NLRC3: About MalaCardswegener's granulomatosis crohn's disease
Export disorders for NLRC3 gene to outside databases
|
Publications
for NLRC3 gene (in
PubMed.
Associations of this gene to articles via
1Entrez Gene,
2UniProtKB/Swiss-Prot,
3HGNC,
4GAD,
5PharmGKB,
6HMDB,
7DrugBank,
8UniProtKB/TrEMBL,
9 Novoseek, and/or
10fRNAdb)
About This Section
|
PubMed articles for NLRC3 gene integrated from 9 sources:
(articles sorted by number of sources associating them with NLRC3) | |  | Utopia: connect your pdf to the dynamic
world of online information |
- CATERPILLER 16.2 (CLR16.2), a novel NBD/LRR family member that negatively regulates T cell function. (PubMed id 15705585)1, 2, 3 Conti B.J....Ting J.P.-Y. (2005)
- NODs: intracellular proteins involved in inflammation and apoptosis. (PubMed id 12766759)1, 2, 3 Inohara N. and Nunez G. (2003)
- The innate immune sensor NLRC3 attenuates Toll-like re ceptor signaling via modification of the signaling adaptor TRAF6 and transcripti on factor NF-kB. (PubMed id 22863753)1 Schneider M....Ting J.P. (2012)
- Methods for quantification of in vivo changes in prote in ubiquitination following proteasome and deubiquitinase inhibition. (PubMed id 22505724)1 Udeshi N.D....Carr S.A. (2012)
- Post-transcriptional inhibition of luciferase reporter assays by the Nod-like receptor proteins NLRX1 and NLRC3. (PubMed id 22718770)1 Ling A....Girardin S.E. (2012)
- Downregulation of immune signaling genes in patients w ith large surface burn injury. (PubMed id 17925653)1 Moore C.B....Cairns B.A. (2007)
- CATERPILLER: a novel gene family important in immunity, cell death, and diseases. (PubMed id 15771576)2 Ting J.P.-Y. and Davis B.K. (2005)
- Characterization of long cDNA clones from human adult spleen. II. The complete sequences of 81 cDNA clones. (PubMed id 12693554)2 Jikuya H....Ohara O. (2003)
- Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (2002)
|
External Searches for NLRC3 gene
(in PubMed,
OMIM, and NCBI Bookshelf)
About This Section
|
|
Genome Databases showing NLRC3 gene
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
Kegg,
and/or
H-InvDB)
About This Section
|
|
Other Databases showing NLRC3 gene
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NLRC3 gene(According to PharmGKB,
ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section
|
| Name | Description |
| PharmGKB entry for NLRC3 | Pharmacogenomics, SNPs, Pathways |
|
| | |
About This Section
| Patent Information for NLRC3 gene:
Search GeneIP for patents involving NLRC3
GeneCards and IP:
Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
|
Products
for NLRC3 gene(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or
Enzo Life Sciences),
In Situ Hybridization Assays from
Advanced Cell Diagnostics
About This Section
|
 | |
 | |
 |
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variant library, vector shuttling | | | OriGene Custom Antibody Services for NLRC3 | | OriGene Custom Protein Services for NLRC3 | | | OriGene Custom Immunoassay Development | | |
| |
 |
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| | | QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NLRC3 | | | QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NLRC3 | | | QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NLRC3 | | | QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NLRC3 | | | QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NLRC3 | | | QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NLRC3 |
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| |  |  |  |  | | | | |
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 |
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 | | | NLRC3 Proteins, Antibodies, CLIAs, and ELISAs |
| | | | | Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NLRC3 |
|  |  |  | | | | ThermoFisher Antibodies for NLRC3 |
| | | Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NLRC3 |
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