NKX2-8 Gene
protein-coding GIFtS : 44
GCID: GC14 M037049
NK2 homeobox 8 (Previous names: NK-2 homolog H (Drosophila), NK2 transcription factor related,... ) (Previous symbol: NKX2H )
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Aliasesfor NKX2-8 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases NK2 Homeobox 8 1 2 Homeobox Protein Nkx-2.82 NKX2H1 2 3 5 NK-2 Homolog 82 NKX2.81 2 5 NK-2 Homolog H2 Nkx2-91 2 NK2 Transcription Factor Related, Locus 82 Homeobox Protein NK-2 Homolog H2 3 NKX-2.83 NK-2 Homolog H (Drosophila)1 NKX2G3 NK2 Transcription Factor Related, Locus 8 (Drosophila)1
Export aliases for NKX2-8 gene to outside databases Previous GC identifers: GC14M034430 GC14M030907 GC14M035039 GC14M036118 GC14M017163
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Summariesfor NKX2-8 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section --
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Genomic Viewsfor NKX2-8 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000014.8 NC_018925.1 NT_026437.12 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NKX2-8 gene promoter: HSF1 (long) POU3F2 (N-Oct-5b) POU3F2 (N-Oct-5a) POU3F2 C/EBPalpha RORalpha2 FOXJ2 (long isoform) HSF1short Chx10 FOXJ2 Other transcription factors Search SABiosciences Chromatin IP Primers for NKX2-8 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKX2-8
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 14q13.3 Ensembl cytogenetic band: 14q13.3 HGNC cytogenetic band: 14q13.3 NKX2-8 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 14 GeneLoc Exon Structure
GeneLoc location for GC14M037049: view genomic region
(about GC identifiers )
Start:
37,049,216 bp from pter
End:
37,051,812 bp from pter
Size:
2,597 bases
Orientation:
minus strand
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Proteinsfor NKX2-8 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NKX28_HUMAN, O15522 (See
protein sequence )Recommended Name: Homeobox protein Nkx-2.8 Size : 239 amino acids; 25866 Da
Subcellular location : Nucleus (Probable)
Secondary accessions : Q8IUT7Explore the universe of human proteins at neXtProt for NKX2-8: NX_O15522 NKX2-8 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_055175.2 ENSEMBL proteins: ENSP00000258829 Human Recombinant Protein Products: Gene Ontology (GO): 2 cellular component terms (GO ID links to tree view) : About this table
NKX2-8 for ontologies About GeneDecksing NKX2-8 Antibody Products: Assay Products for NKX2-8:
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Protein
Domains / Familiesfor NKX2-8 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NKX2-8 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry O15522 ProtoNet protein and cluster: O15522
UniProtKB/Swiss-Prot: NKX28_HUMAN, O15522 Similarity : Belongs to the NK-2 homeobox familySimilarity : Contains 1 homeobox DNA-binding domain
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Functionfor NKX2-8 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKX2-8 (NM_014360 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKX2-8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKX2-8
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKX2-8
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
NKX2-8 for ontologies About GeneDecksing Animal Models: 5 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Nkx2-9) :
NKX2-8 for phenotypes About GeneDecksing
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Pathways & Interactionsfor NKX2-8 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NKX2-8 Gene Ontology (GO): 5/8 biological process terms (GO ID links to tree view) (see all 8 ): About this table
NKX2-8 for ontologies About GeneDecksing
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Drugs & Compoundsfor NKX2-8 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NKX2-8 Search CenterWatch for drugs/clinical trials and news about NKX2-8 / NKX28
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Transcriptsfor NKX2-8 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NKX2-8 gene: NM_014360.2 Unigene Cluster for NKX2-8:
NK2 homeobox 8 Hs.234763 [show with all ESTs ] Unigene Representative Sequence: NM_014360 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000258829 (uc001wtx.3 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKX2-8 (NM_014360 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKX2-8 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKX2-8
Additional cDNA sequence: AF000295.1 AK313537.1 BC041090.1
1 DOTS entry : DT.404058
10 AceView cDNA sequences :
BC041090 BX281241 NM_014360 AF000295 AI684194 BE222075 BI830535 BE669646 BM920951 AW342086 GeneLoc Exon Structure
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Expression for NKX2-8 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NKX2-8 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: GCCACCTCTG
About this image NKX2-8 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table Stem Cell Differentiation: 1 LifeMap Cell Name Category Primitive gut tube-like cells (A scalable, suspensi... )Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See NKX2-8 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NKX2-8 SOURCE GeneReport for Unigene cluster: Hs.234763 SABiosciences Custom PCR Arrays for NKX2-8 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKX2-8Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse / rat NKX2-8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKX2-8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKX2-8 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKX2-8
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Orthologsfor NKX2-8 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NKX2-8 gene from 4/16 species (see all 16 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
LOC7713971
homeobox protein Nkx-2.8-like
69.17(n) 65.49(a)
 
771397 XM_003641360.1 XP_003641408.1
zebrafish (Danio rerio)
Actinopterygii
nkx2.91
NK2 transcription factor related, locus 9 (Drosophila)
57.42(n) 55.98(a)
 
325615 NM_001099603.1 NP_001093073.1
fruit fly (Drosophila melanogaster)
Insecta
vnd6
ventral nervous system defective
10(a)
1 → many
X(476732-491855)
worm (Caenorhabditis elegans)
Secernentea
ceh-226 ceh-276
Homeobox family member (ceh-27)
20(a) 18(a)
possible orthologpossible ortholog
V(10672438-10675623) V(11661535-11664679)
ENSEMBL Gene Tree for NKX2-8 (if available)TreeFam Gene Tree for NKX2-8 (if available)
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Paralogsfor NKX2-8 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for NKX2-8 gene NKX2-3 2 TLX1 2 HMX2 2 NKX3-2 2 NKX2-6 2 NKX2-1 2 NKX2-5 2 NKX2-2 2 LBX1 2 HMX3 2 NKX2-4 2 TLX3 2 HMX1 2 TLX2 2 LBX2 2 NKX3-1 2 4 SIMAP similar genes for NKX2-8 using alignment to 1 protein entry: NKX28_HUMAN :NKX2-5 NKX2-4 NKX2-3 NKX2-2
NKX2-8 for paralogs About GeneDecksing
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Genomic Variantsfor NKX2-8 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 14 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NKX2-8 (37049216 - 37051812 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV): 1 variation for NKX2-8 1 CNV : 7034
SABiosciences Cancer Mutation PCR Assays
1 SABiosciences qBiomarker Copy Number PCR Array containing NKX2-8 :
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKX2-8
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Disorders
/ Diseasesfor NKX2-8 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NKX2-8 for disorders About GeneDecksing
OMIM gene information: 603245
OMIM disorders : --3 diseases for NKX2-8 : About MalaCards hepatocellular carcinoma lung cancer carcinoma Export disorders for NKX2-8 gene to outside databases
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Publicationsfor NKX2-8 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NKX2-8 gene integrated from 9 sources : (articles sorted by number of sources associating them with NKX2-8) Utopia : connect your pdf to the dynamic world of online information
A novel nk-2-related transcription factor associated with human fetal liver and hepatocellular carcinoma. (PubMed id 9446603) 1 , 2 , 3 Apergis G.A.... Locker J. (1998) Regulation of alpha-fetoprotein expression by Nkx2.8. (PubMed id 12167706) 1 , 9 Kajiyama Y....Locker J. (2002) The tumor-suppressor gene Nkx2.8 suppresses bladder ca ncer proliferation through upregulation of FOXO3a and inhibition of the MEK/ERK signaling pathway. (PubMed id 22223847) 1 Yu C....Song L. (2012) Both gene amplification and allelic loss occur at 14q 13.3 in lung cancer. (PubMed id 21148747) 1 Harris T....Locker J. (2011) Characterizing the developmental pathways TTF-1, NKX2-8, and PAX9 in lung cancer. (PubMed id 19279207) 1 Hsu D.S....Potti A. (2009) SMYD3 encodes a histone methyltransferase involved in the proliferation of cancer cells. (PubMed id 15235609) 1 Hamamoto R.... Nakamura Y. (2004) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 2 Ota T.... Sugano S. (2004) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Comparative analysis of the genomic organization of Pax9 and its conserved physical association with Nkx2-9 in the human, mouse, and pufferfish genomes. (PubMed id 11252173) 1 Santagati F....Imai K. (2001)
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External Searches for NKX2-8 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NKX2-8 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NKX2-8 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NKX2-8 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NKX2-8 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NKX2-8 gene: Search GeneIP for patents involving NKX2-8 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NKX2-8 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NKX2-8 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NKX2-8 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKX2-8 OriGene Protein Over-expression Lysate for NKX2-8 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NKX2-8 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-8 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for NKX2-8 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NKX2-8 OriGene Custom Protein Services for NKX2-8 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NKX2-8 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKX2-8 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKX2-8 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NKX2-8 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKX2-8 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKX2-8
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NKX2-8 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKX2-8
Search ThermoFisher Antibodies for NKX2-8
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKX2-8
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Aliases for NKX2-8
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Disorders / Diseases for NKX2-8
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Drugs / Compounds for NKX2-8
Expression for NKX2-8
Function for NKX2-8
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Orthologs for NKX2-8
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Transcripts for NKX2-8
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