NKX2-6 Gene
protein-coding GIFtS : 34
GCID: GC08 M023559
NK2 homeobox 6 (Previous names: NK2 transcription factor related, locus 6 (Drosophila)... )
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Aliasesfor NKX2-6 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases NK2 Homeobox 6 1 2 Homeobox Protein Nkx-2.62 CSX21 2 5 Homeobox Protein NKX2.62 NKX4-21 2 NK2 Transcription Factor Related, Locus 62 NKX2F2 3 Tinman Paralog2 NK2 Transcription Factor Related, Locus 6 (Drosophila)1 Homeobox Protein NK-2 Homolog F3 Homeobox Protein NK2 Homolog F2
Export aliases for NKX2-6 gene to outside databases Previous GC identifers: GC08M023616 GC08M022105
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Summariesfor NKX2-6 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for NKX2-6 : This gene encodes a homeobox-containing protein that belongs to the NK-2 homeobox family. This protein is a vertebrate homolog of Drosophila homeobox-containing protein called 'tinman', which has been shown to be essential for development of the heart-like dorsal vessel. In conjunction with related gene, NKX2-5, this gene may play a role in both pharyngeal and cardiac embryonic development. Mutations in this gene are associated with persistent truncus arteriosus.(provided by RefSeq, Aug 2011) UniProtKB/Swiss-Prot: NKX26_HUMAN, A6NCS4 Function : In conjunction with NKX2-5, may play a role in both pharyngeal and cardiac embryonic development (Bysimilarity)
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Genomic Viewsfor NKX2-6 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000008.10 NC_018919.1 NT_167187.1 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NKX2-6 gene promoter: TBP NF-1 NF-1/L GCNF C/EBPalpha N-Myc GCNF-1 FOXO1a GCNF-2 FOXO1 Other transcription factors Search SABiosciences Chromatin IP Primers for NKX2-6 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKX2-6
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 8p21.2 Ensembl cytogenetic band: 8p21.2 HGNC cytogenetic band: 8p21.2 NKX2-6 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 8 GeneLoc Exon Structure
GeneLoc location for GC08M023559: view genomic region
(about GC identifiers )
Start:
23,559,964 bp from pter
End:
23,564,111 bp from pter
Size:
4,148 bases
Orientation:
minus strand
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Proteinsfor NKX2-6 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NKX26_HUMAN, A6NCS4 (See
protein sequence )Recommended Name: Homeobox protein Nkx-2.6 Size : 301 amino acids; 32121 Da
Subcellular location : Nucleus (Probable)Explore the universe of human proteins at neXtProt for NKX2-6: NX_A6NCS4 NKX2-6 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_001129743.2 ENSEMBL proteins: ENSP00000320089 ENSP00000402231 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
NKX2-6 for ontologies About GeneDecksing NKX2-6 Antibody Products: Assay Products for NKX2-6:
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Protein
Domains / Familiesfor NKX2-6 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NKX2-6 for domains About GeneDecksing 4 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry A6NCS4 ProtoNet protein and cluster: A6NCS4
UniProtKB/Swiss-Prot: NKX26_HUMAN, A6NCS4 Similarity : Belongs to the NK-2 homeobox familySimilarity : Contains 1 homeobox DNA-binding domain
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Functionfor NKX2-6 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: NKX26_HUMAN, A6NCS4 Function : In conjunction with NKX2-5, may play a role in both pharyngeal and cardiac embryonic development (Bysimilarity)
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKX2-6 (NM_001136271 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKX2-6 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NKX2-6
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003700 sequence-specific DNA binding transcription factor activity
IDA 15649947 GO:0043565 sequence-specific DNA binding
IEA --
NKX2-6 for ontologies About GeneDecksing Animal Models: Mouse knock-out Nkx2-6 Nkx2-tm1Siz for NKX2-6 8 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nkx2-6) :
NKX2-6 for phenotypes About GeneDecksing
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Pathways & Interactionsfor NKX2-6 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NKX2-6 Gene Ontology (GO): 5/14 biological process terms (GO ID links to tree view) (see all 14 ): About this table
NKX2-6 for ontologies About GeneDecksing
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Drugs & Compoundsfor NKX2-6 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NKX2-6 Search CenterWatch for drugs/clinical trials and news about NKX2-6 / NKX26
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Transcriptsfor NKX2-6 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NKX2-6 gene: NM_001136271.2 Unigene Cluster for NKX2-6:
NK2 homeobox 6 Hs.532654 [show with all ESTs ] Unigene Representative Sequence: NM_001136271 2 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000325017 (uc011kzy.2 ) ENST00000418222 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6 OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKX2-6 (NM_001136271 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKX2-6 Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NKX2-6
GeneLoc Exon Structure
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Expression for NKX2-6 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NKX2-6 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image NKX2-6 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See NKX2-6 Protein Expression from SPIRE MOPED and PaxDB SOURCE GeneReport for Unigene cluster: Hs.532654 SABiosciences Custom PCR Arrays for NKX2-6 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKX2-6Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NKX2-6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKX2-6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKX2-6
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Orthologsfor NKX2-6 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NKX2-6 gene from 3/15 species (see all 15 ) About this table
Organism
Taxonomic classification
Gene
Description
Human Similarity
Orthology Type
Details
chicken (Gallus gallus)
Aves
NKX2-61
NK2 homeobox 6
63.44(n) 65.05(a)
 
396037 NM_205137.1 NP_990468.1
fruit fly (Drosophila melanogaster)
Insecta
tin6
tinman
15(a)
1 → many
3R(17204701-17207692)
worm (Caenorhabditis elegans)
Secernentea
ceh-286
Homeobox family member (ceh-28)
26(a)
1 → many
X(13074613-13076023)
ENSEMBL Gene Tree for NKX2-6 (if available)TreeFam Gene Tree for NKX2-6 (if available)
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Paralogsfor NKX2-6 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for NKX2-6 gene NKX2-3 2 TLX1 2 HMX2 2 NKX3-2 2 NKX2-8 2 NKX2-1 2 NKX2-5 2 NKX2-2 2 LBX1 2 HMX3 2 NKX2-4 2 TLX3 2 HMX1 2 LBX2 2 TLX2 2 NKX3-1 2 11 SIMAP similar genes for NKX2-6 using alignment to 2 protein entries: NKX26_HUMAN (see all proteins ):NKX2-5 HMX2 HLX HOXB1 NKX2-2 NKX2-3 HOXA4 DLX6 NKX3-1 CDX1 NKX2-4
NKX2-6 for paralogs About GeneDecksing
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Genomic Variantsfor NKX2-6 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 8 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NKX2-6 (23559964 - 23564111 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NKX2-6: -- Human Gene Mutation Database (HGMD) : NKX2-6 SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKX2-6
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Disorders
/ Diseasesfor NKX2-6 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NKX2-6 for disorders About GeneDecksing OMIM gene information: 611770 OMIM disorders : 217095 UniProtKB/Swiss-Prot: NKX26_HUMAN, A6NCS4
Defects in NKX2-6 may be a cause of conotruncal heart malformations (CTHM) [MIM:217095]. CTHM defines a group of congenital heart defects involving the outflow tracts. Examples include truncus arteriosus communis, double-outlet right ventricle and transposition of great arteries. Truncus arteriosus communis is characterized by a single outflow tract instead of a separate aorta and pulmonary artery. In transposition of the great arteries, the aorta arises from the right ventricle and the pulmonary artery from the left ventricle. In double outlet of the right ventricle, both the pulmonary artery and aorta arise from the right ventricle 8 diseases for NKX2-6 : About MalaCards persistent truncus arteriosus double outlet right ventricle pharyngitis conjunctivitis transposition of great arteries conotruncal heart malformations velocardiofacial syndrome digeorge syndrome 1 disease from the University of Copenhagen DISEASES database for NKX2-6 :Velocardiofacial syndrome Export disorders for NKX2-6 gene to outside databases
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Publicationsfor NKX2-6 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NKX2-6 gene integrated from 9 sources : (articles sorted by number of sources associating them with NKX2-6) Utopia : connect your pdf to the dynamic world of online information
Common arterial trunk associated with a homeodomain mutation of NKX2.6. (PubMed id 15649947) 1 , 2 , 3 Heathcote K....Syrris P. (2005) Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PubMed id 15146197) 1 , 2 Brandenberger R.... Stanton L.W. (2004) Beyond single-marker analyses: mining whole genome sca ns for insights into treatment responses in severe sepsis. (PubMed id 22310353) 1 Man M....Garcia J.G. (2012) Exploration of human ORFeome: high-throughput prepara tion of ORF clones and efficient characterization of their protein products. (PubMed id 18316326) 1 Nagase T....Ohara O. (2008) NKX2.5/NKX2.6 mutations are not a common cause of isolated type 1 truncus arteriosus in a small cohort of multiethnic cases. (PubMed id 18939937) 1 Khetyar M....Carter N. (2008) DNA sequence and analysis of human chromosome 8. (PubMed id 16421571) 2 Nusbaum C....Lander E.S. (2006) tinman-related genes expressed during heart development in Xenopus. (PubMed id 9621430) 1 Newman C.S. and Krieg P.A. (1998) Assignment of cardiac homeobox gene CSX to human chromosome 5q34. (PubMed id 7665173) 1 Shiojima I....Yazaki Y. (1995)
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External Searches for NKX2-6 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NKX2-6 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NKX2-6 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NKX2-6 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NKX2-6 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NKX2-6 gene: Search GeneIP for patents involving NKX2-6 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NKX2-6 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NKX2-6 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NKX2-6 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKX2-6 OriGene Protein Over-expression Lysate for NKX2-6 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NKX2-6 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKX2-6 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NKX2-6 OriGene Custom Protein Services for NKX2-6 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NKX2-6 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKX2-6 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKX2-6 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NKX2-6 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKX2-6 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKX2-6
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NKX2-6 Proteins, Antibodies, CLIAs, and ELISAs
Search ThermoFisher Antibodies for NKX2-6
Search Vector BioLabs for ready-to-use adenovirus/AAV for human, mouse, rat NKX2-6
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Aliases for NKX2-6
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Expression for NKX2-6
Function for NKX2-6
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