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Aliases for NKX2-2-AS1 Gene

Subcategory (RNA class) for NKX2-2-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NKX2-2-AS1 Gene

  • NKX2-2 Antisense RNA 1 2 3 5
  • NKX2-2 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NKX2-2 Antisense RNA 2
  • NKX2-2AS 3

External Ids for NKX2-2-AS1 Gene

Previous GeneCards Identifiers for NKX2-2-AS1 Gene

  • GC00U933047
  • GC20P021493

Summaries for NKX2-2-AS1 Gene

GeneCards Summary for NKX2-2-AS1 Gene

NKX2-2-AS1 (NKX2-2 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NKX2-2-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKX2-2-AS1 Gene

Genomics for NKX2-2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NKX2-2-AS1 Gene

Promoters and enhancers for NKX2-2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20I021507 Enhancer 1.1 VISTA FANTOM5 dbSUPER 0.8 -2.8 -2799 1.5 SUZ12 PRDM1 EZH2 NKX2-2 PAX1 NKX2-2-AS1 ENSG00000278041 GC20P021326
GH20I021505 Enhancer 1.3 Ensembl ENCODE dbSUPER 0.4 -5.2 -5238 2.3 SIN3A ZNF2 ZNF48 GLIS2 ARID2 ZNF416 ZNF207 ZNF143 ZNF202 REST RPS15AP1 XRN2 RPL24P2 ENSG00000278041 NKX2-2 NKX2-2-AS1 GC20P021326
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NKX2-2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NKX2-2-AS1 Gene

Genomic Locations for NKX2-2-AS1 Gene
chr20:21,511,447-21,512,309
(GRCh38/hg38)
Size:
863 bases
Orientation:
Plus strand
chr20:21,492,085-21,492,947
(GRCh37/hg19)

Genomic View for NKX2-2-AS1 Gene

Genes around NKX2-2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NKX2-2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NKX2-2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NKX2-2-AS1 Gene

Proteins for NKX2-2-AS1 Gene

Post-translational modifications for NKX2-2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NKX2-2-AS1 Gene

Domains & Families for NKX2-2-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NKX2-2-AS1 Gene

Function for NKX2-2-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NKX2-2-AS1 Gene

Localization for NKX2-2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NKX2-2-AS1 Gene

Pathways & Interactions for NKX2-2-AS1 Gene

SuperPathways for NKX2-2-AS1 Gene

No Data Available

Interacting Proteins for NKX2-2-AS1 Gene

Gene Ontology (GO) - Biological Process for NKX2-2-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NKX2-2-AS1 Gene

Drugs & Compounds for NKX2-2-AS1 Gene

No Compound Related Data Available

Transcripts for NKX2-2-AS1 Gene

mRNA/cDNA for NKX2-2-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NKX2-2-AS1 Gene

No ASD Table

Relevant External Links for NKX2-2-AS1 Gene

GeneLoc Exon Structure for
NKX2-2-AS1
ECgene alternative splicing isoforms for
NKX2-2-AS1

Expression for NKX2-2-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NKX2-2-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NKX2-2-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x12.1), Brain - Substantia nigra (x6.5), and Pituitary (x4.3).
genes like me logo Genes that share expression patterns with NKX2-2-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NKX2-2-AS1 Gene

Orthologs for NKX2-2-AS1 Gene

Evolution for NKX2-2-AS1 Gene

ENSEMBL:
Gene Tree for NKX2-2-AS1 (if available)
TreeFam:
Gene Tree for NKX2-2-AS1 (if available)

No data available for Orthologs for NKX2-2-AS1 Gene

Paralogs for NKX2-2-AS1 Gene

No data available for Paralogs for NKX2-2-AS1 Gene

Variants for NKX2-2-AS1 Gene

Additional Variant Information for NKX2-2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NKX2-2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NKX2-2-AS1 Gene

Disorders for NKX2-2-AS1 Gene

No disorders were found for NKX2-2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NKX2-2-AS1 Gene

Publications for NKX2-2-AS1 Gene

  1. Nkx2.2 antisense RNA overexpression enhanced oligodendrocytic differentiation. (PMID: 18538132) Tochitani S … Hayashizaki Y (Biochemical and biophysical research communications 2008) 2 3 58

Products for NKX2-2-AS1 Gene

Sources for NKX2-2-AS1 Gene

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