Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NKX2-1-AS1 Gene

Subcategory (RNA class) for NKX2-1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NKX2-1-AS1 Gene

  • NKX2-1 Antisense RNA 1 2 3
  • NKX2-1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NKX2-1-AS1 Gene

ORGUL Members for NKX2-1-AS1 Gene

Summaries for NKX2-1-AS1 Gene

GeneCards Summary for NKX2-1-AS1 Gene

NKX2-1-AS1 (NKX2-1 Antisense RNA 1) is a RNA Gene, and belongs to antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKX2-1-AS1 Gene

Genomics for NKX2-1-AS1 Gene

Genomic Location for NKX2-1-AS1 Gene

Start:
36,519,278 bp from pter
End:
36,523,016 bp from pter
Size:
3,739 bases
Orientation:
Plus strand

Genomic View for NKX2-1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NKX2-1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NKX2-1-AS1 Gene

No data available for Regulatory Elements for NKX2-1-AS1 Gene

Proteins for NKX2-1-AS1 Gene

Post-translational modifications for NKX2-1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NKX2-1-AS1 Gene

Domains for NKX2-1-AS1 Gene

Gene Families for NKX2-1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs
genes like me logo Genes that share domains with NKX2-1-AS1: view

No data available for Protein Domains and UniProtKB/Swiss-Prot for NKX2-1-AS1 Gene

Function for NKX2-1-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NKX2-1-AS1 Gene

Localization for NKX2-1-AS1 Gene

No data available for Gene Ontology (GO) - Cellular Components for NKX2-1-AS1 Gene

Pathways for NKX2-1-AS1 Gene

SuperPathways for NKX2-1-AS1 Gene

No Data Available

Interacting Proteins for NKX2-1-AS1 Gene

Gene Ontology (GO) - Biological Process for NKX2-1-AS1 Gene

None

No data available for Pathways by source for NKX2-1-AS1 Gene

Transcripts for NKX2-1-AS1 Gene

mRNA/cDNA for NKX2-1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NKX2-1-AS1 Gene

NKX2-1 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NKX2-1-AS1 Gene

No ASD Table

Relevant External Links for NKX2-1-AS1 Gene

GeneLoc Exon Structure for
NKX2-1-AS1
ECgene alternative splicing isoforms for
NKX2-1-AS1

Expression for NKX2-1-AS1 Gene

mRNA expression in normal human tissues for NKX2-1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NKX2-1-AS1 Gene

This gene is overexpressed in Thyroid (33.0) and Lung (11.2).

SOURCE GeneReport for Unigene cluster for NKX2-1-AS1 Gene Hs.497090

genes like me logo Genes that share expressions with NKX2-1-AS1: view

Orthologs for NKX2-1-AS1 Gene

Evolution for NKX2-1-AS1 Gene

ENSEMBL:
Gene Tree for NKX2-1-AS1 (if available)
TreeFam:
Gene Tree for NKX2-1-AS1 (if available)

No data available for Orthologs for NKX2-1-AS1 Gene

Paralogs for NKX2-1-AS1 Gene

No data available for Paralogs for NKX2-1-AS1 Gene

Variants for NKX2-1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NKX2-1-AS1 Gene

SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
rs8004831 -- 36,522,806(+) ACTAA(C/G)GCACC nc-transcript-variant
rs60759711 -- 36,522,976(+) AGTGA(-/TT)TTTTT nc-transcript-variant
rs67268304 -- 36,523,422(+) CCCCA(C/G)CCCCC downstream-variant-500B
rs112163180 -- 36,523,172(+) CGACC(A/G)CGCTC downstream-variant-500B
rs113826125 -- 36,523,233(+) GCTCG(G/T)CCCTA downstream-variant-500B

Relevant External Links for NKX2-1-AS1 Gene

HapMap Linkage Disequilibrium report
NKX2-1-AS1

No data available for Structural Variations from Database of Genomic Variants (DGV) for NKX2-1-AS1 Gene

Disorders for NKX2-1-AS1 Gene

No disorders were found for NKX2-1-AS1 Gene.

No data available for UniProtKB/Swiss-Prot for NKX2-1-AS1 Gene

Publications for NKX2-1-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
  2. Genome wide association study of age at menarche in the Japanese population. (PMID: 23667675) Tanikawa C. … Matsuda K. (PLoS ONE 2013) 3
  3. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3

Products for NKX2-1-AS1 Gene

Sources for NKX2-1-AS1 Gene

Back to Top

Content