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Aliases for NKX2-1-AS1 Gene

Subcategory (RNA class) for NKX2-1-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NKX2-1-AS1 Gene

  • NKX2-1 Antisense RNA 1 2 3
  • NKX2-1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NKX2-1-AS1 Gene

ORGUL Members for NKX2-1-AS1 Gene

Previous GeneCards Identifiers for NKX2-1-AS1 Gene

  • GC14P036989

Summaries for NKX2-1-AS1 Gene

GeneCards Summary for NKX2-1-AS1 Gene

NKX2-1-AS1 (NKX2-1 Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKX2-1-AS1 Gene

Genomics for NKX2-1-AS1 Gene

Genomic Location for NKX2-1-AS1 Gene

Start:
36,519,278 bp from pter
End:
36,523,016 bp from pter
Size:
3,739 bases
Orientation:
Plus strand

Genomic View for NKX2-1-AS1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NKX2-1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NKX2-1-AS1 Gene

No data available for Regulatory Elements for NKX2-1-AS1 Gene

Proteins for NKX2-1-AS1 Gene

Post-translational modifications for NKX2-1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NKX2-1-AS1 Gene

Domains for NKX2-1-AS1 Gene

Gene Families for NKX2-1-AS1 Gene

HGNC:
  • LNCRNA :Long non-coding RNAs

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NKX2-1-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NKX2-1-AS1 Gene

Function for NKX2-1-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NKX2-1-AS1 Gene

Localization for NKX2-1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NKX2-1-AS1 Gene

Pathways for NKX2-1-AS1 Gene

SuperPathways for NKX2-1-AS1 Gene

No Data Available

Interacting Proteins for NKX2-1-AS1 Gene

Gene Ontology (GO) - Biological Process for NKX2-1-AS1 Gene

None

No data available for Pathways by source for NKX2-1-AS1 Gene

Transcripts for NKX2-1-AS1 Gene

mRNA/cDNA for NKX2-1-AS1 Gene

(3) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NKX2-1-AS1 Gene

NKX2-1 antisense RNA 1:
Representative Sequences:

miRNA Products

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NKX2-1-AS1
    • Block miRNA regulation of NKX2-1-AS1 using miScript Target Protectors

    Inhibitory RNA Products

    • Predesigned siRNA for gene silencing in human,mouse,rat for NKX2-1-AS1

    Primer Products

    Flow Cytometry Products

    Alternative Splicing Database (ASD) splice patterns (SP) for NKX2-1-AS1 Gene

    No ASD Table

    Relevant External Links for NKX2-1-AS1 Gene

    GeneLoc Exon Structure for
    NKX2-1-AS1
    ECgene alternative splicing isoforms for
    NKX2-1-AS1

    Expression for NKX2-1-AS1 Gene

    mRNA expression in normal human tissues for NKX2-1-AS1 Gene

    mRNA differential expression in normal tissues according to GTEx for NKX2-1-AS1 Gene

    This gene is overexpressed in Thyroid (33.0) and Lung (11.2).

    SOURCE GeneReport for Unigene cluster for NKX2-1-AS1 Gene Hs.497090

    genes like me logo Genes that share expressions with NKX2-1-AS1: view

    In Situ Assay Products

    No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein expression and mRNA Expression by UniProt/SwissProt for NKX2-1-AS1 Gene

    Orthologs for NKX2-1-AS1 Gene

    Evolution for NKX2-1-AS1 Gene

    ENSEMBL:
    Gene Tree for NKX2-1-AS1 (if available)
    TreeFam:
    Gene Tree for NKX2-1-AS1 (if available)

    No data available for Orthologs for NKX2-1-AS1 Gene

    Paralogs for NKX2-1-AS1 Gene

    No data available for Paralogs for NKX2-1-AS1 Gene

    Variants for NKX2-1-AS1 Gene

    Sequence variations from dbSNP and Humsavar for NKX2-1-AS1 Gene

    SNP ID Clin Chr 14 pos Sequence Context AA Info Type MAF
    rs8004831 -- 36,522,806(+) ACTAA(C/G)GCACC nc-transcript-variant
    rs60759711 -- 36,522,976(+) AGTGA(-/TT)TTTTT nc-transcript-variant
    rs67268304 -- 36,523,422(+) CCCCA(C/G)CCCCC downstream-variant-500B
    rs112163180 -- 36,523,172(+) CGACC(A/G)CGCTC downstream-variant-500B
    rs113826125 -- 36,523,233(+) GCTCG(G/T)CCCTA downstream-variant-500B

    Relevant External Links for NKX2-1-AS1 Gene

    HapMap Linkage Disequilibrium report
    NKX2-1-AS1

    PCR Panel Products

    No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NKX2-1-AS1 Gene

    Disorders for NKX2-1-AS1 Gene

    No disorders were found for NKX2-1-AS1 Gene.

    No data available for UniProtKB/Swiss-Prot for NKX2-1-AS1 Gene

    Publications for NKX2-1-AS1 Gene

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3
    2. Genome wide association study of age at menarche in the Japanese population. (PMID: 23667675) Tanikawa C. … Matsuda K. (PLoS ONE 2013) 3
    3. Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications. (PMID: 25307233) Zhao W. … Jiao S. (Sci Rep 2014) 3

    Products for NKX2-1-AS1 Gene

    Sources for NKX2-1-AS1 Gene

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