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NKX1-1 Gene

protein-coding   GIFtS: 30
GCID: GC04M001396

NK1 Homeobox 1

(Previous names: NK1 transcription factor related, locus 1 (Drosophila))
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
NK1 Homeobox 11 2     SAX22
Homeobox Protein 1532 3     HPX-153 Homeobox2
Homeobox Protein SAX-22 3     NK1 Transcription Factor Related, Locus 12
NKX-1.12 3     NK1 Transcription Factor-Related Protein 12
NK1 Transcription Factor Related, Locus 1 (Drosophila)1     HPX-1533
HSPX1532     HPX1533

External Ids:    HGNC: 249751   Entrez Gene: 547292   Ensembl: ENSG000002356087   UniProtKB: Q152703   

Export aliases for NKX1-1 gene to outside databases

Previous GC identifers: GC04U900463 GC04M001380


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NKX1-1 Gene:
NKX1-1 (NK1 homeobox 1) is a protein-coding gene. GO annotations related to this gene include sequence-specific DNA binding and sequence-specific DNA binding transcription factor activity. An important paralog of this gene is DLX2.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000004.10  NT_037622.5  
Regulatory elements:
   Regulatory transcription factor binding sites in the NKX1-1 gene promoter:
         NCX/Ncx   MyoD   Evi-1   S8   POU2F1   POU2F1b   POU2F1a   Sox9   POU2F1c   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NKX1-1


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 4p16.3   Ensembl cytogenetic band:  4p16.3   HGNC cytogenetic band: 4p16.3

NKX1-1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NKX1-1 gene location

GeneLoc information about chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04M001396:  view genomic region     (about GC identifiers)

Start:
1,396,720 bp from pter      End:
1,400,119 bp from pter
Size:
3,400 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: NKX11_HUMAN, Q15270 (See protein sequence)
Recommended Name: NK1 transcription factor-related protein 1  
Size: 411 amino acids; 40659 Da

Explore the universe of human proteins at neXtProt for NKX1-1: NX_Q15270

Explore proteomics data for NKX1-1 at MOPED


See NKX1-1 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_001277008.1  
ENSEMBL proteins: 
 ENSP00000407978  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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HGNC Gene Families:
NKL: Homeoboxes / ANTP class : NKL subclass

4 InterPro protein domains:
 IPR020479 Homeobox_metazoa
 IPR017970 Homeobox_CS
 IPR001356 Homeobox_dom
 IPR009057 Homeodomain-like

Graphical View of Domain Structure for InterPro Entry Q15270

ProtoNet protein and cluster: Q15270

UniProtKB/Swiss-Prot: NKX11_HUMAN, Q15270
Similarity: Belongs to the NK-1 homeobox family
Similarity: Contains 1 homeobox DNA-binding domain


Find genes that share domains with NKX1-1           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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     Gene Ontology (GO): 3 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0003677DNA binding ----
GO:0003700sequence-specific DNA binding transcription factor activity IEA--
GO:0043565sequence-specific DNA binding IEA--
     
Find genes that share ontologies with NKX1-1           About GenesLikeMe


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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
NKX11_HUMAN, Q15270: Nucleus (By similarity)
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
nucleus5
cytosol2

Gene Ontology (GO): 1 cellular component term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005634nucleus IEA--

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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Interactions:

    Search GeneGlobe Interaction Network for NKX1-1

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for NKX1-1 (Q152703 ENSP000004079784) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
EIF3HO153723, ENSP000002766824I2D: score=1 STRING: ENSP00000276682
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Gene Ontology (GO): Selected biological process terms (see all 6):    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0006355regulation of transcription, DNA-templated ----
GO:0006629lipid metabolic process IEA--
GO:0008150biological_process ND--
GO:0010906regulation of glucose metabolic process IEA--
GO:0043467regulation of generation of precursor metabolites and energy IEA--

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for NKX1-1 gene: 
NM_001290079.1  

Unigene Cluster for NKX1-1:

NK1 homeobox 1
Hs.526396
Unigene Representative Sequence: X76978
1 Ensembl transcript including schematic representation, and UCSC links where relevant:
ENST00000422806
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Additional mRNA sequence: X76978.1 
GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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NKX1-1 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: --
NKX1-1 Expression
About this image

NKX1-1 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

NKX1-1 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.526396

UniProtKB/Swiss-Prot: NKX11_HUMAN, Q15270
Tissue specificity: Expressed in hemopoietic progenitor cells

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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for NKX1-1 gene from Selected species (see all 10)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
chicken
(Gallus gallus)
Aves NKX1-16
NK1 homeobox 1
53(a)
1 ↔ 1
4(83983652-83989486)
African clawed frog
(Xenopus laevis)
Amphibia Xl.258512 Xenopus laevis nbx mRNA for NK-1 related homeobox protein Nbx, complete cds less 79.07(n)    AB103111.1 
zebrafish
(Danio rerio)
Actinopterygii pnx2 posterior neuron-specific homeobox 77.36(n)   352939  AB067731.1 
worm
(Caenorhabditis elegans)
Secernentea ceh-16
Protein CEH-1 (ceh-1) mRNA, complete cds
48(a)
1 ↔ 1
X(4653434-4654157) WBGene00000428
        Species with no ortholog for NKX1-1

ENSEMBL Gene Tree for NKX1-1 (if available)
TreeFam Gene Tree for NKX1-1 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for NKX1-1 gene
DLX22  BARX12  GBX12  VENTX2  GBX22  BARHL12  BARHL22  MNX12  
BARX22  DLX12  DLX32  LBX22  NKX1-22  BSX2  DLX52  DLX62  
DLX42  LBX12  MSX22  MSX12  
5 SIMAP similar genes for NKX1-1 using alignment to 1 protein entry:     NKX11_HUMAN:
HMX2    DLX6    HOXB1    NKX1-2    homeobox gene

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Site Specific Mutation Identification with PCR Assays
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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NKX1-1 gene integrated from 10 sources:
(articles sorted by number of sources associating them with NKX1-1)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PubMed id 7518789)1, 2, 3 Moretti P....D'Andrea R. (Gene 1994)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 54729 HGNC: 24975 Ensembl:ENSG00000235608 euGenes: HUgn54729 ECgene: NKX1-1
H-InvDB: NKX1-1

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for NKX1-1 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NKX1-1 gene:
Search GeneIP for patents involving NKX1-1

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



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