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Aliases for NKX1-1 Gene

Aliases for NKX1-1 Gene

  • NK1 Homeobox 1 2 3 5
  • Homeobox Protein SAX-2 3 4
  • Homeobox Protein 153 3 4
  • NKX-1.1 3 4
  • NK1 Transcription Factor Related, Locus 1 (Drosophila) 2
  • NK1 Transcription Factor Related, Locus 1 3
  • HPX-153 Homeobox 3
  • HSPX153 3
  • HPX-153 4
  • HPX153 4
  • SAX2 3

External Ids for NKX1-1 Gene

Previous GeneCards Identifiers for NKX1-1 Gene

  • GC04U900463
  • GC04M001380

Summaries for NKX1-1 Gene

GeneCards Summary for NKX1-1 Gene

NKX1-1 (NK1 Homeobox 1) is a Protein Coding gene. GO annotations related to this gene include sequence-specific DNA binding. An important paralog of this gene is HOXD3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKX1-1 Gene

Genomics for NKX1-1 Gene

Regulatory Elements for NKX1-1 Gene

Enhancers for NKX1-1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NKX1-1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NKX1-1 Gene

Chromosome:
4
Start:
1,402,932 bp from pter
End:
1,406,442 bp from pter
Size:
3,511 bases
Orientation:
Minus strand

Genomic View for NKX1-1 Gene

Genes around NKX1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NKX1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NKX1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NKX1-1 Gene

Proteins for NKX1-1 Gene

  • Protein details for NKX1-1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15270-NKX11_HUMAN
    Recommended name:
    NK1 transcription factor-related protein 1
    Protein Accession:
    Q15270

    Protein attributes for NKX1-1 Gene

    Size:
    411 amino acids
    Molecular mass:
    40659 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NKX1-1 Gene

Proteomics data for NKX1-1 Gene at MOPED

Post-translational modifications for NKX1-1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NKX1-1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NKX1-1 Gene

Domains & Families for NKX1-1 Gene

Gene Families for NKX1-1 Gene

Protein Domains for NKX1-1 Gene

Suggested Antigen Peptide Sequences for NKX1-1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15270

UniProtKB/Swiss-Prot:

NKX11_HUMAN :
  • Contains 1 homeobox DNA-binding domain.
  • Belongs to the NK-1 homeobox family.
Domain:
  • Contains 1 homeobox DNA-binding domain.
Family:
  • Belongs to the NK-1 homeobox family.
genes like me logo Genes that share domains with NKX1-1: view

Function for NKX1-1 Gene

Phenotypes for NKX1-1 Gene

genes like me logo Genes that share phenotypes with NKX1-1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NKX1-1 Gene

Localization for NKX1-1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NKX1-1 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NKX1-1 Gene COMPARTMENTS Subcellular localization image for NKX1-1 gene
Compartment Confidence
nucleus 5
cytosol 2

No data available for Gene Ontology (GO) - Cellular Components for NKX1-1 Gene

Pathways & Interactions for NKX1-1 Gene

SuperPathways for NKX1-1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NKX1-1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008150 biological_process ND --
GO:0010906 regulation of glucose metabolic process IEA --
GO:0043467 regulation of generation of precursor metabolites and energy IEA --
GO:0050877 neurological system process IEA --
genes like me logo Genes that share ontologies with NKX1-1: view

No data available for Pathways by source and SIGNOR curated interactions for NKX1-1 Gene

Drugs & Compounds for NKX1-1 Gene

No Compound Related Data Available

Transcripts for NKX1-1 Gene

mRNA/cDNA for NKX1-1 Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NKX1-1 Gene

No ASD Table

Relevant External Links for NKX1-1 Gene

GeneLoc Exon Structure for
NKX1-1
ECgene alternative splicing isoforms for
NKX1-1

Expression for NKX1-1 Gene

mRNA expression in normal human tissues for NKX1-1 Gene

mRNA differential expression in normal tissues according to GTEx for NKX1-1 Gene

This gene is overexpressed in Testis (x40.0) and Pituitary (x11.3).

Protein differential expression in normal tissues from HIPED for NKX1-1 Gene

This gene is overexpressed in Peripheral blood mononuclear cells (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for NKX1-1 Gene



SOURCE GeneReport for Unigene cluster for NKX1-1 Gene Hs.526396

mRNA Expression by UniProt/SwissProt for NKX1-1 Gene

Q15270-NKX11_HUMAN
Tissue specificity: Expressed in hemopoietic progenitor cells.
genes like me logo Genes that share expression patterns with NKX1-1: view

Protein tissue co-expression partners for NKX1-1 Gene

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for NKX1-1 Gene

Orthologs for NKX1-1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NKX1-1 Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia -- 36
  • 29 (a)
ManyToMany
dog
(Canis familiaris)
Mammalia NKX1-1 36
  • 88 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 22 (a)
ManyToMany
mouse
(Mus musculus)
Mammalia Nkx1-1 36
  • 85 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NKX1-1 36
  • 49 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NKX1-1 36
  • 62 (a)
OneToOne
chicken
(Gallus gallus)
Aves NKX1-1 36
  • 53 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.25851 35
zebrafish
(Danio rerio)
Actinopterygii pnx 35
nkx1.2lb 36
  • 50 (a)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea ceh-1 36
  • 48 (a)
OneToOne
Species with no ortholog for NKX1-1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)

Evolution for NKX1-1 Gene

ENSEMBL:
Gene Tree for NKX1-1 (if available)
TreeFam:
Gene Tree for NKX1-1 (if available)

Paralogs for NKX1-1 Gene

(5) SIMAP similar genes for NKX1-1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NKX1-1: view

Variants for NKX1-1 Gene

Sequence variations from dbSNP and Humsavar for NKX1-1 Gene

SNP ID Clin Chr 04 pos Sequence Context AA Info Type
rs11731672 -- 1,405,109(+) GCCCT(C/T)CATCT intron-variant
rs11248002 -- 1,404,447(+) AGCCC(A/C)GGCTC intron-variant
rs11945310 -- 1,403,509(+) GGCCC(G/T)GGGCA reference, missense
rs13133264 -- 1,403,823(+) GCGGG(A/C)GGGAG intron-variant
rs13120467 -- 1,406,219(+) GGGGC(A/G)CTGCG reference, missense

Variation tolerance for NKX1-1 Gene

Gene Damage Index Score: 1.57; 30.32% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NKX1-1 Gene

HapMap Linkage Disequilibrium report
NKX1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NKX1-1 Gene

Disorders for NKX1-1 Gene

Relevant External Links for NKX1-1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NKX1-1

No disorders were found for NKX1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NKX1-1 Gene

Publications for NKX1-1 Gene

  1. Identification of homeobox genes expressed in human haemopoietic progenitor cells. (PMID: 7518789) Moretti P. … D'Andrea R. (Gene 1994) 2 3 4 67

Products for NKX1-1 Gene

Sources for NKX1-1 Gene

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