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NKG7 Gene

protein-coding   GIFtS: 46
GCID: GC19M051874

Natural Killer Cell Granule Protein 7

(Previous name: natural killer cell group 7 sequence)
  See related diseases
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Natural Killer Cell Granule Protein 71 2     GMP-172 3
Natural Killer Cell Group 7 Sequence1 2     G-CSF-Induced Gene 1 Protein2 3
Granule Membrane Protein 171 2     GIG-1 Protein2 3
Granule Membrane Protein Of 17 KDa2 3     p15-TIA-12 3
Natural Killer Cell Protein 72 3     Protein NKG72
GIG12 3     

External Ids:    HGNC: 78301   Entrez Gene: 48182   Ensembl: ENSG000001053747   OMIM: 6060085   UniProtKB: Q166173   

Export aliases for NKG7 gene to outside databases

Previous GC identifers: GC19M052505 GC19M052236 GC19M056550 GC19M056566 GC19M048206


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NKG7 Gene:
NKG7 (natural killer cell granule protein 7) is a protein-coding gene. Diseases associated with NKG7 include sezary's disease, and gilles de la tourette syndrome.


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence:
NC_000019.10  NT_011109.17  NC_018930.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the NKG7 gene promoter:
         Pax-5   Pax-6   RelA   NF-kappaB   HNF-4alpha1   Roaz   GATA-1   CP2   HSF2   NF-kappaB1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNKG7 promoter sequence
   Search Chromatin IP Primers for NKG7

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NKG7


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 19q13.41   Ensembl cytogenetic band:  19q13.41   HGNC cytogenetic band: 19q13.41

NKG7 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NKG7 gene location

GeneLoc information about chromosome 19         GeneLoc Exon Structure

GeneLoc location for GC19M051874:  view genomic region     (about GC identifiers)

Start:
51,874,860 bp from pter      End:
51,875,969 bp from pter
Size:
1,110 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Cloud-Clone Corp.,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Cloud-Clone Corp., Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, LSBio, Abcam, Cloud-Clone Corp, and/or others.)
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UniProtKB/Swiss-Prot: NKG7_HUMAN, Q16617 (See protein sequence)
Recommended Name: Protein NKG7  
Size: 165 amino acids; 17665 Da

Explore the universe of human proteins at neXtProt for NKG7: NX_Q16617

REFSEQ proteins: NP_005592.1  
ENSEMBL proteins: 
 ENSP00000468910   ENSP00000221978   ENSP00000473204   ENSP00000469370   ENSP00000471163  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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2 InterPro protein domains:
 IPR004032 PMP22_EMP_MP20
 IPR004031 PMP22/EMP/MP20/Claudin

Graphical View of Domain Structure for InterPro Entry Q16617

ProtoNet protein and cluster: Q16617

UniProtKB/Swiss-Prot: NKG7_HUMAN, Q16617
Similarity: Belongs to the PMP-22/EMP/MP20 family


NKG7 for domains           About GeneDecksing


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, inGenious Targeting Laboratory, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: NKG7_HUMAN, Q16617
Induction: By CSF3/G-CSF

     Genatlas biochemistry entry for NKG7:
natural killer,group 7 sequence

Phenotypes:
     1 GenomeRNAi human phenotype for NKG7:
 Decreased cell number, increas 

     1 MGI phenotypic allele for Nkg7 (no phenotypes)

NKG7 for phenotypes           About GeneDecksing

Animal Models:
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hsa-mir-335-5p (MIRT017811)

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hsa-miR-3185
SwitchGear 3'UTR luciferase reporter plasmidNKG7 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
NKG7_HUMAN, Q16617: Cell membrane; Multi-pass membrane protein. Cytoplasmic granule membrane; Multi-pass
membrane protein. Note=Cytoplasmic granules of cytolytic T-lymphocytes, NK cells, and neutrophils
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane5

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005887integral component of plasma membrane TAS8458737
GO:0016021integral component of membrane ----

NKG7 for ontologies           About GeneDecksing


(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NKG7
Interactions:

    Search GeneGlobe Interaction Network for NKG7

STRING Interaction Network Preview (showing 1 interactants - click image to see more details)

1 Interacting protein for NKG7 (ENSP000002219784) via UniProtKB, MINT, STRING, and/or I2D
InteractantInteraction Details
GeneCardExternal ID(s)
GORABENSP000003567374STRING: ENSP00000356737
About this table

(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for NKG7



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, and/or QIAGEN )
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REFSEQ mRNAs for NKG7 gene: 
NM_005601.3  

Unigene Cluster for NKG7:

Natural killer cell group 7 sequence
Hs.10306  [show with all ESTs]
Unigene Representative Sequence: BM918012
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000595217 ENST00000221978(uc002pwj.3 uc002pwk.3) ENST00000593572
ENST00000600427 ENST00000595157
miRNA
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hsa-miR-3185
SwitchGear 3'UTR luciferase reporter plasmidNKG7 3' UTR sequence
Inhib. RNA
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  QuantiFast Probe-based Assays in human, mouse, rat NKG7

Additional mRNA sequence: 

BC015759.1 S69115.1 

3 DOTS entries:

DT.209928  DT.91693064  DT.95172256 

Selected AceView cDNA sequences (see all 115):

AF340020 BQ053800 BF726484 BM705518 BU735198 BF727436 CD675859 BQ054295 
BF726502 BQ051624 BX113367 BI521219 BF726389 BM917505 NM_005601 BC074916 
BF726526 CB216430 AF340019 BF726767 BC074917 BM919418 BU734982 BG743982 

GeneLoc Exon Structure

3 Alternative Splicing Database (ASD) splice patterns (SP) for NKG7    About this scheme

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4a · 4b
SP1:                                                
SP2:                    -                           
SP3:                    -     -                     


ECgene alternative splicing isoforms for NKG7

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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NKG7 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: GTGGTGGCCA
NKG7 Expression
About this image


NKG7 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Adipose (Muscoskeletal System)
         Body Subcutaneous White Adipose
 
 Bone (Muscoskeletal System)
         Bone Marrow
NKG7 Protein expression data from MOPED1, PaxDb2 and MaxQB3 --

SOURCE GeneReport for Unigene cluster: Hs.10306

UniProtKB/Swiss-Prot: NKG7_HUMAN, Q16617
Tissue specificity: Expressed in activated T-cells, in kidney, liver, lung and pancreas. Not expressed in brain,
heart, or skeletal muscle. Expressed at high levels in TCR gamma delta-expressing CTL clones, and in some TCR
alpha beta-expressing CTL clones (both CD4+ and CD8+), but is not expressed in other TCR alpha beta-expressing
CTL clones and in cell lines representing B-cells, monocytes, and myeloid cells

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QuantiFast Probe-based Assays in human, mouse, rat NKG7
In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKG7

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for NKG7 gene from Selected species (see all 7)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Nkg71 , 5 natural killer cell group 7 sequence1, 5 75.35(n)1
69.7(a)1
  7 (28.25 cM)5
723101  NM_024253.41  NP_077215.21 
 434371385 
lizard
(Anolis carolinensis)
Reptilia NKG76
natural killer cell group 7 sequence
35(a)
1 ↔ 1
GL343281.1(1110888-1115542)


ENSEMBL Gene Tree for NKG7 (if available)
TreeFam Gene Tree for NKG7 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for NKG7 (see all 145)    About this table    
Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 19 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1173645301,2
F--51874603(+) CTGGCA/TAGGGG 1 -- ds50011Minor allele frequency- T:0.01EA 120
rs677671121,2
C,F--51874652(+) GCTAAA/TGGGAG 1 -- ds50013Minor allele frequency- T:0.05WA NA 240
rs50260351,2
C,F,H--51874741(+) GCACTC/TGTACT 1 -- ds500121Minor allele frequency- T:0.19NS EA NA WA 2754
rs1479196731,2
--51874813(+) CTCCTA/GCCATG 1 -- ds50010--------
rs1875370461,2
--51874814(+) TCCTAC/TCATGG 1 -- ds50010--------
rs1408003031,2
--51874899(+) ATGAAC/TGAAGA 1 -- ut310--------
rs30091,2
C,F,A,H--51874950(-) GGTCCT/CACATC 1 -- ut31 ese332Minor allele frequency- C:0.27EA MN NS NA WA CSA 7549
rs611285931,2
C,F--51874965(+) TTTCCC/TGAGGC 1 -- ut315Minor allele frequency- T:0.10WA CSA EA 244
rs42571,2
F--51874975(-) CTCATA/CTGGAG 1 -- ut313Minor allele frequency- C:0.34EA MN 4644
rs1501111941,2
C--51874998(+) CAACGA/CTCAAA 1 -- ut310--------

HapMap Linkage Disequilibrium report for NKG7 (51874860 - 51875969 bp)

Structural Variations
     Database of Genomic Variants (DGV) 1 variation for NKG7:    About this table    
Variant IDTypeSubtypePubMed ID
nsv912294CNV Gain21882294

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing NKG7
DNA2.0 Custom Variant and Variant Library Synthesis for NKG7

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Novoseek, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 606008    OMIM disorders: --

4 diseases for NKG7:    
About MalaCards
sezary's disease    gilles de la tourette syndrome    myeloid leukemia    leukemia


NKG7 for disorders           About GeneDecksing

1 Novoseek inferred disease relationship for NKG7 gene    About this table

Disease   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
myeloid leukemia chronic 54.1 1 9886253 (1)


Export disorders for NKG7 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NKG7 gene integrated from 10 sources:
(articles sorted by number of sources associating them with NKG7)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Characterization of a novel gene (NKG7) on human chromosome 19 that is expressed in natural killer cells and T cells. (PubMed id 8458737)1, 2, 3, 9 Turman M.A.... Houchins J.P. (Hum. Immunol. 1993)
  2. Molecular cloning and characterization of G-CSF induced gene cDNA. (PubMed id 7510105)1, 2, 9 Shimane M.... Asano S. (Biochem. Biophys. Res. Commun. 1994)
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  4. Characterization of GMP-17, a granule membrane protein that moves to the plasma membrane of natural killer cells following target cell recognition. (PubMed id 8570616)2, 9 Medley Q.G.... Anderson P. (Proc. Natl. Acad. Sci. U.S.A. 1996)
  5. Toward an understanding of the protein interaction network of the human liver. (PubMed id 21988832)1 Wang J....Yang X. (Mol. Syst. Biol. 2011)
  6. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  7. Significant expression of G-CSF-induced gene-1 (GIG-1) protein in myeloid cells and NK cells. (PubMed id 9886253)9 Shimane M....Asano S. (J. Leukoc. Biol. 1999)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Disorders
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4818 HGNC: 7830 AceView: NKG7andLIM2 Ensembl:ENSG00000105374 euGenes: HUgn4818
ECgene: NKG7 H-InvDB: NKG7

(According to HUGE)
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(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for NKG7 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NKG7 gene:
Search GeneIP for patents involving NKG7

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, LSBio, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript, and ESI BIO, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from inGenious Targeting Laboratory, genOway)
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