NKD1 Gene
protein-coding GIFtS : 49
GCID: GC16 P050582
naked cuticle homolog 1 (Drosophila)
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Aliasesfor NKD1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Naked Cuticle Homolog 1 (Drosophila) 1 2 Protein Naked Cuticle Homolog 12 Naked12 NKD3 Dvl-Binding Protein2 Naked-13 Naked Cuticle-12 HNkd1 Naked-13 HNkd11
Export aliases for NKD1 gene to outside databases Previous GC identifers: GC16P040995 GC16P050629 GC16P050319 GC16P050360 GC16P049139 GC16P036470
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Summariesfor NKD1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for NKD1 : In the mouse, Nkd is a Dishevelled (see DVL1; MIM 601365)-binding protein that functions as a negative regulator of the Wnt (see WNT1; MIM 164820)-beta-catenin (see MIM 116806)-Tcf (see MIM 602272) signaling pathway.(supplied by OMIM, Jun 2003) UniProtKB/Swiss-Prot: NKD1_HUMAN, Q969G9 Function : Cell autonomous antagonist of the canonical Wnt signaling pathway. May activate a second Wnt signalingpathway that controls planar cell polarity
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Genomic Viewsfor NKD1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000016.9 NC_018927.1 NT_010498.15 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NKD1 gene promoter: PPAR-gamma1 AP-4 PPAR-gamma2 LCR-F1 Other transcription factors Search SABiosciences Chromatin IP Primers for NKD1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKD1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 16q12.1 Ensembl cytogenetic band: 16q12.1 HGNC cytogenetic band: 16q12.1 NKD1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 16 GeneLoc Exon Structure
GeneLoc location for GC16P050582: view genomic region
(about GC identifiers )
Start:
50,582,241 bp from pter
End:
50,670,647 bp from pter
Size:
88,407 bases
Orientation:
plus strand
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Proteinsfor NKD1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: NKD1_HUMAN, Q969G9 (See
protein sequence )Recommended Name: Protein naked cuticle homolog 1 Size : 470 amino acids; 52285 Da
Subunit : Interacts with DVL1, DVL2, DVL3 and PPP2R3A
Subcellular location : Cell membrane (By similarity). Cytoplasm (By similarity)
Developmental stage : Expressed in fetal brain, kidney, liver and lung
Secondary accessions : B2RC39 Q8WZ08Explore the universe of human proteins at neXtProt for NKD1: NX_Q969G9 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q969G9 NKD1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_149110.1 ENSEMBL proteins: ENSP00000268459 Human Recombinant Protein Products: Gene Ontology (GO): 3 cellular component terms (GO ID links to tree view) : About this table
NKD1 for ontologies About GeneDecksing NKD1 Antibody Products: Assay Products for NKD1:
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Protein
Domains / Familiesfor NKD1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NKD1 for domains About GeneDecksing 3 InterPro domains/families :
Graphical View of Domain Structure for InterPro Entry Q969G9 ProtoNet protein and cluster: Q969G9
UniProtKB/Swiss-Prot: NKD1_HUMAN, Q969G9 Similarity : Belongs to the NKD familySimilarity : Contains 1 EF-hand domain
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Functionfor NKD1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: NKD1_HUMAN, Q969G9 Function : Cell autonomous antagonist of the canonical Wnt signaling pathway. May activate a second Wnt signalingpathway that controls planar cell polarity Induction : Expression is induced by activation of the Wnt signaling pathway
Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKD1 (NM_033119 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKD1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKD1
Gene Ontology (GO): 3 molecular function terms (GO ID links to tree view) : About this table
NKD1 for ontologies About GeneDecksing Animal Models: Mouse knock-out Nkd1 tm1Tko for NKD1 7 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Nkd1) :
NKD1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor NKD1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Wnt Signaling Pathway 2 Wnt / Hedgehog / Notch 3 Presenilin action in Notch and Wnt signaling
Pathway sources See GeneCards unified pathways Show all pathways 1
Cell Signaling Technology (CST) Pathway for NKD1 3 BioSystems Pathways for NKD1 1
Kegg Pathway (Kegg details for NKD1) :
NKD1 for pathways About GeneDecksing Interactions: Search SABiosciences Gene Network CentralTM Interacting Genes and Proteins Networks for NKD1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 9)5/97 Interacting proteins for NKD1 (Q969G9 1 , 3 ENSP00000268459 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 97 )About this table Gene Ontology (GO): 5/9 biological process terms (GO ID links to tree view) (see all 9 ): About this table
NKD1 for ontologies About GeneDecksing
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Drugs & Compoundsfor NKD1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NKD1 Search CenterWatch for drugs/clinical trials and news about NKD1
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Transcriptsfor NKD1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NKD1 gene: NM_033119.4 Unigene Cluster for NKD1:
Naked cuticle homolog 1 (Drosophila) Hs.187578 [show with all ESTs ] Unigene Representative Sequence: NM_033119 3 Ensembl transcripts including schematic representations, and UCSC links where relevant : ENST00000268459 (uc002egg.2 ) ENST00000564336 ENST00000566396 Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NKD1 (NM_033119 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NKD1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKD1
Additional cDNA sequence: AB062886.1 AF289584.1 AF358135.1 AK000276.1 AK021701.1 AK023784.1 AK314930.1 AY061883.1 BC051288.1
5 DOTS entries : DT.92046947 DT.92015373
DT.203755 DT.453967 DT.91673444 24/56 AceView cDNA sequences (see all 56 ):
AW268418 BU846054 BG820139 CD675898 BQ645656 AB062886 NM_033119 AI884849 BQ644360 D11959 BQ644956 AK000276 BQ653673 CB215756 BC051288 BQ064678 AF358135 AY061883 AI333791 BM711145 BF588561 AI167910 AA262960 AA236306 GeneLoc Exon Structure
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Expression for NKD1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NKD1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: --
About this image NKD1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table 1 LifeMap In Vivo Development Anatomical Compartment/Cell Tissue Anatomical Compartment
Cell Category (developmental path) Paraxial Mesoderm Paraxial Mesoderm Paraxial Mesoderm Cells Mesoderm Expression: Positive Negative
Selective markerExperimental details:
Curated
Microarrays
In-situ hybridization
See NKD1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NKD1 SOURCE GeneReport for Unigene cluster: Hs.187578 UniProtKB/Swiss-Prot: NKD1_HUMAN, Q969G9 Tissue specificity : Expressed in colon, heart, kidney, leukocyte, liver, lung, ovary, pancreas, placenta, prostate,skeletal muscle, small intestine and spleen SABiosciences Expression via Pathway-Focused PCR Array including NKD1 : Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKD1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NKD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKD1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKD1
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Orthologsfor NKD1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NKD1 gene from 4/13 species (see all 13 ) About this table
ENSEMBL Gene Tree for NKD1 (if available)TreeFam Gene Tree for NKD1 (if available)
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Paralogsfor NKD1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for NKD1 gene NKD2 2 1 SIMAP similar gene for NKD1 using alignment to 1 protein entry: NKD1_HUMAN :NKD2
NKD1 for paralogs About GeneDecksing
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Genomic Variantsfor NKD1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 16 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NKD1 (50582241 - 50670647 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NKD1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKD1
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Disorders
/ Diseasesfor NKD1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NKD1 for disorders About GeneDecksing
OMIM gene information: 607851
OMIM disorders : --5 diseases for NKD1 : About MalaCards hyperopia strabismus colorectal cancer lung cancer prostatitis Export disorders for NKD1 gene to outside databases
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Publicationsfor NKD1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NKD1 gene, integrated from 9 sources (see all 13 ): (articles sorted by number of sources associating them with NKD1) Utopia : connect your pdf to the dynamic world of online information
Vertebrate proteins related to Drosophila Naked Cuticle bind Dishevelled and antagonize Wnt signaling. (PubMed id 11356022) 1 , 2 , 3, 9 Wharton K.A. Jr.... Scott M.P. (2001) Molecular cloning, gene structure, and expression analyses of NKD1 and NKD2. (PubMed id 11604995) 1 , 2 , 9 Katoh M. (2001) PR130 is a modulator of the Wnt-signaling cascade that counters repression of the antagonist Naked cuticle. (PubMed id 16567647) 1 , 2 Creyghton M.P....Bernards R. (2006) PR72, a novel regulator of Wnt signaling required for Naked cuticle function. (PubMed id 15687260) 1 , 2 Creyghton M.P.... Bernards R. (2005) Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039) 1 , 2 Ota T.... Sugano S. (2004) Elevated expression of axin2 and hnkd mRNA provides evidence that Wnt/beta-catenin signaling is activated in human colon tumors. (PubMed id 11752446) 1 , 2 Yan D.... Williams L.T. (2001) A genome-wide scan of Ashkenazi Jewish Crohn's disease suggests novel susceptibility loci. (PubMed id 22412388) 1 Kenny E.E....Peter I. (2012) Down-regulation of NKD1 increases the invasive potent ial of non-small-cell lung cancer and correlates with a poor prognosis. (PubMed id 21599923) 1 Zhang S....Wang E.H. (2011) Mutations in the human naked cuticle homolog NKD1 fou nd in colorectal cancer alter Wnt/Dvl/beta-catenin signaling. (PubMed id 19956716) 1 Guo J....Liu W. (2009) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 2 Gerhard D.S....Malek J. (2004)
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External Searches for NKD1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NKD1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NKD1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NKD1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
Name Description
PharmGKB entry for NKD1 Pharmacogenomics, SNPs, Pathways
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About This Section Patent Information for NKD1 gene: Search GeneIP for patents involving NKD1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NKD1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
OriGene Antibodies for NKD1 OriGene shRNA RFP for NKD1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NKD1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NKD1 Browse OriGene Protein Over-expression Lysates Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NKD1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NKD1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs Browse OriGene full length recombinant human proteins expressed in human HEK293 cells OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NKD1 OriGene Custom Protein Services for NKD1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NKD1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NKD1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human , mouse , rat NKD1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NKD1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NKD1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NKD1
Antibodies & Assays for NKD1  
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NKD1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NKD1
ThermoFisher Antibodies for NKD1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NKD1
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