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Aliases for NKD1 Gene

Aliases for NKD1 Gene

  • Naked Cuticle Homolog 1 (Drosophila) 2 3
  • Naked-1 3 4
  • Protein Naked Cuticle Homolog 1 3
  • Dvl-Binding Protein 3
  • Naked Cuticle-1 3
  • Naked1 3
  • HNkd1 4
  • HNkd 4
  • NKD 4

External Ids for NKD1 Gene

Summaries for NKD1 Gene

Entrez Gene Summary for NKD1 Gene

  • In the mouse, Nkd is a Dishevelled (see DVL1; MIM 601365)-binding protein that functions as a negative regulator of the Wnt (see WNT1; MIM 164820)-beta-catenin (see MIM 116806)-Tcf (see MIM 602272) signaling pathway.[supplied by OMIM, Jun 2003]

GeneCards Summary for NKD1 Gene

NKD1 (Naked Cuticle Homolog 1 (Drosophila)) is a Protein Coding gene. Among its related pathways are Hippo signaling pathway and Wnt signaling pathway (KEGG). GO annotations related to this gene include calcium ion binding and PDZ domain binding. An important paralog of this gene is NKD2.

UniProtKB/Swiss-Prot for NKD1 Gene

  • Cell autonomous antagonist of the canonical Wnt signaling pathway. May activate a second Wnt signaling pathway that controls planar cell polarity.

No data available for Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKD1 Gene

Genomics for NKD1 Gene

Genomic Location for NKD1 Gene

Start:
50,548,330 bp from pter
End:
50,640,860 bp from pter
Size:
92,531 bases
Orientation:
Plus strand

Genomic View for NKD1 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NKD1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NKD1 Gene

Regulatory Elements for NKD1 Gene

Proteins for NKD1 Gene

  • Protein details for NKD1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q969G9-NKD1_HUMAN
    Recommended name:
    Protein naked cuticle homolog 1
    Protein Accession:
    Q969G9
    Secondary Accessions:
    • B2RC39
    • Q8WZ08

    Protein attributes for NKD1 Gene

    Size:
    470 amino acids
    Molecular mass:
    52285 Da
    Quaternary structure:
    • Interacts with DVL1, DVL2, DVL3 and PPP2R3A.

neXtProt entry for NKD1 Gene

Proteomics data for NKD1 Gene at MOPED

Post-translational modifications for NKD1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NKD1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NKD1 Gene

Domains for NKD1 Gene

Gene Families for NKD1 Gene

HGNC:
  • EFHAND :EF-hand domain containing

Protein Domains for NKD1 Gene

UniProtKB/Swiss-Prot:

NKD1_HUMAN
Domain:
  • Contains 1 EF-hand domain.:
    • Q969G9
Family:
  • Belongs to the NKD family.:
    • Q969G9
genes like me logo Genes that share domains with NKD1: view

Function for NKD1 Gene

Molecular function for NKD1 Gene

UniProtKB/Swiss-Prot Function: Cell autonomous antagonist of the canonical Wnt signaling pathway. May activate a second Wnt signaling pathway that controls planar cell polarity.
UniProtKB/Swiss-Prot Induction: Expression is induced by activation of the Wnt signaling pathway.

Gene Ontology (GO) - Molecular Function for NKD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 15687260
GO:0030165 PDZ domain binding IEA --
genes like me logo Genes that share ontologies with NKD1: view
genes like me logo Genes that share phenotypes with NKD1: view

Animal Models for NKD1 Gene

MGI Knock Outs for NKD1:

miRNA for NKD1 Gene

miRTarBase miRNAs that target NKD1

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targeting and HOMER Transcription for NKD1 Gene

Localization for NKD1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NKD1 Gene

Cell membrane. Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NKD1 Gene COMPARTMENTS Subcellular localization image for NKD1 gene
Compartment Confidence
nucleus 3
cytosol 2
plasma membrane 2
mitochondrion 1
peroxisome 1

Gene Ontology (GO) - Cellular Components for NKD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000159 colocalizes_with protein phosphatase type 2A complex IDA 15687260
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IEA --
genes like me logo Genes that share ontologies with NKD1: view

Pathways for NKD1 Gene

genes like me logo Genes that share pathways with NKD1: view

Pathways by source for NKD1 Gene

1 Cell Signaling Technology pathway for NKD1 Gene
2 KEGG pathways for NKD1 Gene

Gene Ontology (GO) - Biological Process for NKD1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0001754 eye photoreceptor cell differentiation ISS 15687260
GO:0007525 somatic muscle development ISS 15687260
GO:0016055 Wnt signaling pathway IEA --
GO:0030178 negative regulation of Wnt signaling pathway --
GO:0045732 positive regulation of protein catabolic process IMP 15687260
genes like me logo Genes that share ontologies with NKD1: view

Transcripts for NKD1 Gene

Unigene Clusters for NKD1 Gene

Naked cuticle homolog 1 (Drosophila):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NKD1 Gene

No ASD Table

Relevant External Links for NKD1 Gene

GeneLoc Exon Structure for
NKD1
ECgene alternative splicing isoforms for
NKD1

Expression for NKD1 Gene

mRNA expression in normal human tissues for NKD1 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NKD1 Gene

This gene is overexpressed in Artery - Tibial (4.6).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NKD1 Gene

SOURCE GeneReport for Unigene cluster for NKD1 Gene Hs.187578

mRNA Expression by UniProt/SwissProt for NKD1 Gene

Q969G9-NKD1_HUMAN
Tissue specificity: Expressed in colon, heart, kidney, leukocyte, liver, lung, ovary, pancreas, placenta, prostate, skeletal muscle, small intestine and spleen.
genes like me logo Genes that share expressions with NKD1: view

Orthologs for NKD1 Gene

This gene was present in the common ancestor of animals.

Orthologs for NKD1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NKD1 36
  • 99.19 (n)
  • 98.9 (a)
NKD1 37
  • 99 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NKD1 36
  • 88.94 (n)
  • 89.79 (a)
NKD1 37
  • 90 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NKD1 36
  • 89.57 (n)
  • 89.36 (a)
NKD1 37
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nkd1 36
  • 86 (n)
  • 87.42 (a)
Nkd1 16
Nkd1 37
  • 87 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NKD1 37
  • 72 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NKD1 37
  • 70 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nkd1 36
  • 86.07 (n)
  • 85.29 (a)
chicken
(Gallus gallus)
Aves NKD1 36
  • 66.52 (n)
  • 66.67 (a)
NKD1 37
  • 63 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NKD1 37
  • 60 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nkd1 36
  • 60.43 (n)
  • 56.12 (a)
zebrafish
(Danio rerio)
Actinopterygii nkd1 36
  • 58.49 (n)
  • 53.47 (a)
nkd1 37
  • 51 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta nkd 37
  • 11 (a)
OneToMany
Species with no ortholog for NKD1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NKD1 Gene

ENSEMBL:
Gene Tree for NKD1 (if available)
TreeFam:
Gene Tree for NKD1 (if available)

Paralogs for NKD1 Gene

Paralogs for NKD1 Gene

Selected SIMAP similar genes for NKD1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NKD1: view

Variants for NKD1 Gene

Sequence variations from dbSNP and Humsavar for NKD1 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type MAF
rs12913 -- 50,634,515(-) TGAGA(A/G)GGATG utr-variant-3-prime
rs730055 -- 50,608,226(-) AAAGC(A/G)GTGCC intron-variant
rs745230 -- 50,636,271(+) AGCCC(C/G)GAGTT utr-variant-3-prime
rs746702 -- 50,608,543(+) TGTGG(C/T)ACTTC intron-variant
rs749985 -- 50,639,740(-) TGGCC(A/G)TCTTT utr-variant-3-prime

Structural Variations from Database of Genomic Variants (DGV) for NKD1 Gene

Variant ID Type Subtype PubMed ID
esv2714459 CNV Deletion 23290073
esv2714460 CNV Deletion 23290073
esv2714461 CNV Deletion 23290073

Relevant External Links for NKD1 Gene

HapMap Linkage Disequilibrium report
NKD1

Disorders for NKD1 Gene

No disorders were found for NKD1 Gene.

No data available for UniProtKB/Swiss-Prot for NKD1 Gene

Publications for NKD1 Gene

  1. Vertebrate proteins related to Drosophila Naked Cuticle bind Dishevelled and antagonize Wnt signaling. (PMID: 11356022) Wharton K.A. Jr. … Scott M.P. (Dev. Biol. 2001) 2 3 4 23
  2. Molecular cloning, gene structure, and expression analyses of NKD1 and NKD2. (PMID: 11604995) Katoh M. (Int. J. Oncol. 2001) 3 4 23
  3. Elevated expression of axin2 and hnkd mRNA provides evidence that Wnt/beta-catenin signaling is activated in human colon tumors. (PMID: 11752446) Yan D. … Williams L.T. (Proc. Natl. Acad. Sci. U.S.A. 2001) 3 4
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  5. PR72, a novel regulator of Wnt signaling required for Naked cuticle function. (PMID: 15687260) Creyghton M.P. … Bernards R. (Genes Dev. 2005) 3 4

Products for NKD1 Gene

Sources for NKD1 Gene

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