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Aliases for NKAPP1 Gene

Aliases for NKAPP1 Gene

  • NFKB Activating Protein Pseudogene 1 2 3 5
  • CXorf42 3 4
  • NF-Kappa-B-Activating Protein Pseudogene 1 4
  • Chromosome X Open Reading Frame 42 2

External Ids for NKAPP1 Gene

Previous HGNC Symbols for NKAPP1 Gene

  • CXorf42

Previous GeneCards Identifiers for NKAPP1 Gene

  • GC0XM119371
  • GC0XM108822
  • GC0XM119255
  • GC0XM119258

Summaries for NKAPP1 Gene

GeneCards Summary for NKAPP1 Gene

NKAPP1 (NFKB Activating Protein Pseudogene 1) is a Pseudogene.

Additional gene information for NKAPP1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NKAPP1 Gene

Genomics for NKAPP1 Gene

GeneHancer (GH) Regulatory Elements for NKAPP1 Gene

Promoters and enhancers for NKAPP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XI120243 Promoter/Enhancer 1.6 Ensembl ENCODE 594.1 +0.4 405 1.9 FOXA2 SMAD1 ARNT ZFP64 ARID4B NEUROD1 SIN3A DMAP1 ZNF2 IRF4 NKAPP1 EEF1A1P30 CUL4B NKAP CXorf56 RHOXF1
GH0XI119674 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 66.9 +560.6 560563 20.2 HDGF PKNOX1 SMAD1 ARNT ZFP64 ARID4B FEZF1 IRF4 YY1 POLR2B SEPT6 NKAPP1 EEF1A1P30 CUL4B UPF3B NKAP NKRF MIR766 CXorf56 LINC01402
GH0XI120309 Enhancer 1.2 Ensembl ENCODE 92.3 -64.9 -64933 2.4 PKNOX1 ARNT ARID4B SIN3A FEZF1 ZNF2 IRF4 ZNF213 ZNF302 ZNF416 TMEM255A NKAPP1 UPF3B EEF1A1P30 NKAP LINC01402 RHOXF1 ZBTB33 CXorf56 ENSG00000232042
GH0XI119869 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 30.5 +373.7 373673 4 PKNOX1 ARNT ARID4B SIN3A DMAP1 YY1 POLR2B ZNF766 ZNF213 ZNF143 RNF113A NDUFA1 NKAPP1 UPF3B
GH0XI120466 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 20.3 -222.9 -222874 3.6 PKNOX1 SMAD1 ATF1 ARID4B SIN3A DMAP1 YY1 POLR2B ATF7 RUNX3 LAMP2 CUL4B NKAPP1 NKAP EEF1A1P30 ATP1B4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NKAPP1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NKAPP1 Gene

Genomic Locations for NKAPP1 Gene
chrX:120,120,953-120,245,267
(GRCh38/hg38)
Size:
124,315 bases
Orientation:
Minus strand
chrX:119,254,863-119,379,122
(GRCh37/hg19)

Genomic View for NKAPP1 Gene

Genes around NKAPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NKAPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NKAPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NKAPP1 Gene

Proteins for NKAPP1 Gene

  • Protein details for NKAPP1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N9T2-CX042_HUMAN
    Recommended name:
    Putative uncharacterized protein CXorf42
    Protein Accession:
    Q8N9T2
    Secondary Accessions:
    • Q05CP2
    • Q14CJ5
    • Q7Z3P3

    Protein attributes for NKAPP1 Gene

    Size:
    125 amino acids
    Molecular mass:
    14163 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=CAD97792.1; Type=Miscellaneous discrepancy; Note=Cloning artifact.; Evidence={ECO:0000305};

neXtProt entry for NKAPP1 Gene

Post-translational modifications for NKAPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NKAPP1 Gene

Domains & Families for NKAPP1 Gene

Protein Domains for NKAPP1 Gene

ProtoNet:

Suggested Antigen Peptide Sequences for NKAPP1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NKAPP1: view

No data available for Gene Families and UniProtKB/Swiss-Prot for NKAPP1 Gene

Function for NKAPP1 Gene

Phenotypes for NKAPP1 Gene

GenomeRNAi human phenotypes for NKAPP1:
genes like me logo Genes that share phenotypes with NKAPP1: view

Animal Model Products

Inhibitory RNA Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NKAPP1 Gene

Localization for NKAPP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NKAPP1 Gene

Pathways & Interactions for NKAPP1 Gene

SuperPathways for NKAPP1 Gene

No Data Available

Interacting Proteins for NKAPP1 Gene

Gene Ontology (GO) - Biological Process for NKAPP1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NKAPP1 Gene

Drugs & Compounds for NKAPP1 Gene

No Compound Related Data Available

Transcripts for NKAPP1 Gene

mRNA/cDNA for NKAPP1 Gene

Unigene Clusters for NKAPP1 Gene

NFKB activating protein pseudogene 1:
Representative Sequences:

Inhibitory RNA Products

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NKAPP1 Gene

No ASD Table

Relevant External Links for NKAPP1 Gene

GeneLoc Exon Structure for
NKAPP1
ECgene alternative splicing isoforms for
NKAPP1

Expression for NKAPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NKAPP1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NKAPP1 Gene:

NKAPP1

SOURCE GeneReport for Unigene cluster for NKAPP1 Gene:

Hs.442518
genes like me logo Genes that share expression patterns with NKAPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NKAPP1 Gene

Orthologs for NKAPP1 Gene

Evolution for NKAPP1 Gene

ENSEMBL:
Gene Tree for NKAPP1 (if available)
TreeFam:
Gene Tree for NKAPP1 (if available)

No data available for Orthologs for NKAPP1 Gene

Paralogs for NKAPP1 Gene

No data available for Paralogs for NKAPP1 Gene

Variants for NKAPP1 Gene

Sequence variations from dbSNP and Humsavar for NKAPP1 Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000765624 -- 120,243,962(-) G/A intron_variant
rs1000909210 -- 120,244,413(-) G/T intron_variant
rs1001571944 -- 120,239,716(-) T/G intron_variant
rs1001963005 -- 120,242,898(-) C/T intron_variant
rs1002312024 -- 120,242,329(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NKAPP1 Gene

Variant ID Type Subtype PubMed ID
esv2676041 CNV deletion 23128226
esv2740431 CNV deletion 23290073
esv2740432 CNV deletion 23290073
esv3559257 CNV deletion 23714750

Additional Variant Information for NKAPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NKAPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NKAPP1 Gene

Disorders for NKAPP1 Gene

Additional Disease Information for NKAPP1

No disorders were found for NKAPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NKAPP1 Gene

Publications for NKAPP1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  3. The full-ORF clone resource of the German cDNA Consortium. (PMID: 17974005) Bechtel S … Schupp I (BMC genomics 2007) 4 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 4 58

Products for NKAPP1 Gene

Sources for NKAPP1 Gene

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