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Aliases for NIT2 Gene

Aliases for NIT2 Gene

  • Nitrilase Family, Member 2 2 3
  • Nitrilase Homolog 2 3 4
  • Epididymis Secretory Sperm Binding Protein Li 8a 3
  • Omega-Amidase NIT2 3
  • Nit Protein 2 3
  • EC 3.5.1.3 4
  • HEL-S-8a 3

External Ids for NIT2 Gene

Previous GeneCards Identifiers for NIT2 Gene

  • GC03M096559
  • GC03P099332
  • GC03P101334
  • GC03P101374
  • GC03P101536
  • GC03P100053
  • GC03P097421

Summaries for NIT2 Gene

GeneCards Summary for NIT2 Gene

NIT2 (Nitrilase Family, Member 2) is a Protein Coding gene. Among its related pathways are Alanine, aspartate and glutamate metabolism. GO annotations related to this gene include omega-amidase activity.

UniProtKB/Swiss-Prot for NIT2 Gene

  • Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively. Overexpression decreases the colony-forming capacity of cultured cells by arresting cells in the G2 phase of the cell cycle.

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NIT2 Gene

Genomics for NIT2 Gene

Regulatory Elements for NIT2 Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NIT2 Gene

Start:
100,334,701 bp from pter
End:
100,356,866 bp from pter
Size:
22,166 bases
Orientation:
Plus strand

Genomic View for NIT2 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NIT2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NIT2 Gene

Proteins for NIT2 Gene

  • Protein details for NIT2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NQR4-NIT2_HUMAN
    Recommended name:
    Omega-amidase NIT2
    Protein Accession:
    Q9NQR4
    Secondary Accessions:
    • B2R9A3
    • D3DN47
    • Q8WUF0

    Protein attributes for NIT2 Gene

    Size:
    276 amino acids
    Molecular mass:
    30608 Da
    Quaternary structure:
    • Homodimer.

neXtProt entry for NIT2 Gene

Proteomics data for NIT2 Gene at MOPED

Post-translational modifications for NIT2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NIT2 Gene

No data available for DME Specific Peptides for NIT2 Gene

Domains for NIT2 Gene

Protein Domains for NIT2 Gene

Suggested Antigen Peptide Sequences for NIT2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NQR4

UniProtKB/Swiss-Prot:

NIT2_HUMAN :
  • Q9NQR4
Domain:
  • Contains 1 CN hydrolase domain.
Family:
  • Belongs to the carbon-nitrogen hydrolase superfamily. NIT1/NIT2 family.
genes like me logo Genes that share domains with NIT2: view

No data available for Gene Families for NIT2 Gene

Function for NIT2 Gene

Molecular function for NIT2 Gene

UniProtKB/Swiss-Prot BiophysicochemicalProperties: Kinetic parameters: KM=0.009 mM for alpha-ketoglutaramate (open-chain form) {ECO:0000269 PubMed:19595734}; Vmax=5.9 umol/min/mg enzyme with alpha-ketoglutaramate as substrate {ECO:0000269 PubMed:19595734}; Note=In solution, alpha-ketoglutaramate is in equilibrium with a cyclic form (2-hydroxy-5-oxoproline), and at pH 8.0 or above, the rate of ring opening is no longer limiting for the omega- amidase reaction.;
UniProtKB/Swiss-Prot CatalyticActivity: A monoamide of a dicarboxylate + H(2)O = a dicarboxylate + NH(3)
UniProtKB/Swiss-Prot Function: Has a omega-amidase activity. The role of omega-amidase is to remove potentially toxic intermediates by converting alpha-ketoglutaramate and alpha-ketosuccinamate to biologically useful alpha-ketoglutarate and oxaloacetate, respectively. Overexpression decreases the colony-forming capacity of cultured cells by arresting cells in the G2 phase of the cell cycle.

Enzyme Numbers (IUBMB) for NIT2 Gene

Gene Ontology (GO) - Molecular Function for NIT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds --
GO:0050152 omega-amidase activity IDA 22674578
genes like me logo Genes that share ontologies with NIT2: view

Phenotypes for NIT2 Gene

GenomeRNAi human phenotypes for NIT2:
genes like me logo Genes that share phenotypes with NIT2: view

Animal Model Products

CRISPR Products

miRNA for NIT2 Gene

miRTarBase miRNAs that target NIT2

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NIT2

In Situ Assay Products

Flow Cytometry Products

No data available for Animal Models , Transcription Factor Targeting and HOMER Transcription for NIT2 Gene

Localization for NIT2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NIT2 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NIT2 Gene COMPARTMENTS Subcellular localization image for NIT2 gene
Compartment Confidence
cytoskeleton 4
cytosol 3
mitochondrion 3
nucleus 2
peroxisome 1

Gene Ontology (GO) - Cellular Components for NIT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
GO:0005739 mitochondrion IEA --
GO:0005813 centrosome IDA --
GO:0070062 extracellular exosome IDA 19056867
genes like me logo Genes that share ontologies with NIT2: view

Pathways for NIT2 Gene

genes like me logo Genes that share pathways with NIT2: view

Pathways by source for NIT2 Gene

1 KEGG pathway for NIT2 Gene

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Interacting Proteins for NIT2 Gene

Gene Ontology (GO) - Biological Process for NIT2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006107 oxaloacetate metabolic process IDA 22674578
GO:0006528 asparagine metabolic process IDA 22674578
GO:0006541 glutamine metabolic process IDA 22674578
GO:0006807 nitrogen compound metabolic process --
genes like me logo Genes that share ontologies with NIT2: view

Transcripts for NIT2 Gene

Unigene Clusters for NIT2 Gene

Nitrilase family, member 2:
Representative Sequences:

CRISPR Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NIT2

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NIT2 Gene

ExUns: 1a · 1b ^ 2a · 2b ^ 3a · 3b ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b · 7c ^ 8 ^ 9 ^ 10 ^ 11
SP1: - - -
SP2: - -
SP3:
SP4:
SP5:
SP6:

Relevant External Links for NIT2 Gene

GeneLoc Exon Structure for
NIT2
ECgene alternative splicing isoforms for
NIT2

Expression for NIT2 Gene

mRNA expression in normal human tissues for NIT2 Gene

mRNA differential expression in normal tissues according to GTEx for NIT2 Gene

This gene is overexpressed in Liver (4.5).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for NIT2 Gene

SOURCE GeneReport for Unigene cluster for NIT2 Gene Hs.439152

mRNA Expression by UniProt/SwissProt for NIT2 Gene

Q9NQR4-NIT2_HUMAN
Tissue specificity: Detected in fetal brain (at protein level). Ubiquitous. Detected in heart, brain, placenta, lung, liver, skeletal muscle, kidney, pancreas, prostate, spleen, thymus, prostate, testis, ovary, small intestine and colon.
genes like me logo Genes that share expressions with NIT2: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery for NIT2 Gene

Orthologs for NIT2 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NIT2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NIT2 35
  • 99.27 (n)
  • 98.91 (a)
NIT2 36
  • 98 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NIT2 35
  • 89.09 (n)
  • 89.09 (a)
NIT2 36
  • 89 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NIT2 35
  • 89.25 (n)
  • 88.41 (a)
NIT2 36
  • 86 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nit2 35
  • 87.68 (n)
  • 89.49 (a)
Nit2 16
Nit2 36
  • 89 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NIT2 36
  • 77 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NIT2 36
  • 69 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nit2 35
  • 87.92 (n)
  • 88.41 (a)
chicken
(Gallus gallus)
Aves NIT2 35
  • 76.85 (n)
  • 81.45 (a)
NIT2 36
  • 77 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NIT2 36
  • 75 (a)
OneToOne
African clawed frog
(Xenopus laevis)
Amphibia Xl.4774 35
tropical clawed frog
(Silurana tropicalis)
Amphibia nit2 35
  • 72.36 (n)
  • 78.18 (a)
Str.8728 35
zebrafish
(Danio rerio)
Actinopterygii Dr.27178 35
nit2 35
  • 69 (n)
  • 76.01 (a)
nit2 36
  • 72 (a)
OneToOne
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP012801 35
  • 57.25 (n)
  • 59.11 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG8132 35
  • 57.81 (n)
  • 54.24 (a)
CG8132 36
  • 52 (a)
OneToOne
CG8132 37
  • 53 (a)
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_ACL190W 35
  • 50.69 (n)
  • 50.94 (a)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NIT3 35
  • 53.68 (n)
  • 51.31 (a)
NIT3 36
  • 46 (a)
OneToOne
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0A02453g 35
  • 51.24 (n)
  • 50 (a)
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G12040 35
  • 57.07 (n)
  • 59.41 (a)
corn
(Zea mays)
Liliopsida Zm.3591 35
rice
(Oryza sativa)
Liliopsida Os.19194 35
Os03g0175600 35
  • 54.89 (n)
  • 56.13 (a)
wheat
(Triticum aestivum)
Liliopsida Ta.30353 35
bread mold
(Neurospora crassa)
Ascomycetes NCU06726 35
  • 52.82 (n)
  • 56.25 (a)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPAC26A3.11 35
  • 55.22 (n)
  • 53.73 (a)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.690 35
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 55 (a)
OneToOne
Species with no ortholog for NIT2:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • worm (Caenorhabditis elegans)

Evolution for NIT2 Gene

ENSEMBL:
Gene Tree for NIT2 (if available)
TreeFam:
Gene Tree for NIT2 (if available)

Paralogs for NIT2 Gene

Selected SIMAP similar genes for NIT2 Gene using alignment to 4 proteins:

Pseudogenes.org Pseudogenes for NIT2 Gene

genes like me logo Genes that share paralogs with NIT2: view

No data available for Paralogs for NIT2 Gene

Variants for NIT2 Gene

Sequence variations from dbSNP and Humsavar for NIT2 Gene

SNP ID Clin Chr 03 pos Sequence Context AA Info Type MAF
rs166747 -- 100,339,258(-) AACAC(C/T)GTTCT intron-variant
rs185722 -- 100,338,534(-) gatgt(C/G)tgtct intron-variant
rs202575 -- 100,352,022(+) catca(C/G)tggcc intron-variant
rs277619 -- 100,340,009(-) acagg(C/T)gcacg intron-variant
rs277620 -- 100,338,425(-) gacag(A/G)ggtcc intron-variant

Relevant External Links for NIT2 Gene

HapMap Linkage Disequilibrium report
NIT2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Structural Variations from Database of Genomic Variants (DGV) for NIT2 Gene

Disorders for NIT2 Gene

No disorders were found for NIT2 Gene.

No data available for UniProtKB/Swiss-Prot for NIT2 Gene

Publications for NIT2 Gene

  1. Crystal structure of the worm NitFhit Rosetta stone protein reveals a Nit tetramer binding two Fhit dimers. (PMID: 10959838) Pace H.C. … Brenner C. (Curr. Biol. 2000) 2 3 4
  2. Growth inhibitory effect of the human NIT2 gene and its allelic imbalance in cancers. (PMID: 17488281) Lin C.-H. … Chien C.-H. (FEBS J. 2007) 3 4 23
  3. Oligo-capping: a simple method to replace the cap structure of eukaryotic mRNAs with oligoribonucleotides. (PMID: 8125298) Maruyama K. … Sugano S. (Gene 1994) 3
  4. Arabidopsis mutants resistant to the auxin effects of indole-3-acetonitrile are defective in the nitrilase encoded by the NIT1 gene. (PMID: 9368415) Normanly J. … Bartel B. (Plant Cell 1997) 23
  5. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3

Products for NIT2 Gene

Sources for NIT2 Gene

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