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Aliases for NIPSNAP3B Gene

Aliases for NIPSNAP3B Gene

  • Nipsnap Homolog 3B (C. Elegans) 2 3
  • NIPSNAP3 3 4
  • SNAP1 3 4
  • Protein NipSnap Homolog 3B 3
  • NipSnap3B 4
  • FP944 3

External Ids for NIPSNAP3B Gene

Previous GeneCards Identifiers for NIPSNAP3B Gene

  • GC09P102906
  • GC09P104606
  • GC09P106566
  • GC09P107526
  • GC09P077128

Summaries for NIPSNAP3B Gene

Entrez Gene Summary for NIPSNAP3B Gene

  • NIPSNAP3B belongs to a family of proteins with putative roles in vesicular trafficking (Buechler et al., 2004 [PubMed 15177564]).[supplied by OMIM, Mar 2008]

GeneCards Summary for NIPSNAP3B Gene

NIPSNAP3B (Nipsnap Homolog 3B (C. Elegans)) is a Protein Coding gene. An important paralog of this gene is NIPSNAP3A.

No data available for UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NIPSNAP3B Gene

Genomics for NIPSNAP3B Gene

Regulatory Elements for NIPSNAP3B Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NIPSNAP3B Gene

Start:
104,763,741 bp from pter
End:
104,777,764 bp from pter
Size:
14,024 bases
Orientation:
Plus strand

Genomic View for NIPSNAP3B Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NIPSNAP3B Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NIPSNAP3B Gene

Proteins for NIPSNAP3B Gene

  • Protein details for NIPSNAP3B Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9BS92-NPS3B_HUMAN
    Recommended name:
    Protein NipSnap homolog 3B
    Protein Accession:
    Q9BS92
    Secondary Accessions:
    • Q5VX30
    • Q9NUM2

    Protein attributes for NIPSNAP3B Gene

    Size:
    247 amino acids
    Molecular mass:
    28313 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NIPSNAP3B Gene

Proteomics data for NIPSNAP3B Gene at MOPED

Post-translational modifications for NIPSNAP3B Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NIPSNAP3B Gene

ENSEMBL proteins:
REFSEQ proteins:

Antibody Products

No data available for DME Specific Peptides for NIPSNAP3B Gene

Domains for NIPSNAP3B Gene

Protein Domains for NIPSNAP3B Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NIPSNAP3B Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9BS92

UniProtKB/Swiss-Prot:

NPS3B_HUMAN :
  • Q9BS92
Family:
  • Belongs to the NipSnap family.
genes like me logo Genes that share domains with NIPSNAP3B: view

No data available for Gene Families for NIPSNAP3B Gene

Function for NIPSNAP3B Gene

Phenotypes for NIPSNAP3B Gene

GenomeRNAi human phenotypes for NIPSNAP3B:
genes like me logo Genes that share phenotypes with NIPSNAP3B: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Animal Models , miRNA , Transcription Factor Targeting and HOMER Transcription for NIPSNAP3B Gene

Localization for NIPSNAP3B Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NIPSNAP3B Gene COMPARTMENTS Subcellular localization image for NIPSNAP3B gene
Compartment Confidence
mitochondrion 3

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Gene Ontology (GO) - Cellular Components for NIPSNAP3B Gene

Pathways for NIPSNAP3B Gene

SuperPathways for NIPSNAP3B Gene

No Data Available

Interacting Proteins for NIPSNAP3B Gene

Gene Ontology (GO) - Biological Process for NIPSNAP3B Gene

None

No data available for Pathways by source for NIPSNAP3B Gene

Transcripts for NIPSNAP3B Gene

mRNA/cDNA for NIPSNAP3B Gene

Unigene Clusters for NIPSNAP3B Gene

Nipsnap homolog 3B (C. elegans):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NIPSNAP3B

Primer Products

  • QuantiTect SYBR Green Assays in human,mouse,rat
  • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
  • QuantiFast Probe-based Assays in human,mouse,rat

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NIPSNAP3B Gene

ExUns: 1a · 1b · 1c ^ 2 ^ 3 ^ 4a · 4b ^ 5 ^ 6 ^ 7a · 7b ^ 8
SP1: - -
SP2: -
SP3: - - -
SP4:

Relevant External Links for NIPSNAP3B Gene

GeneLoc Exon Structure for
NIPSNAP3B
ECgene alternative splicing isoforms for
NIPSNAP3B

Expression for NIPSNAP3B Gene

mRNA expression in normal human tissues for NIPSNAP3B Gene

mRNA differential expression in normal tissues according to GTEx for NIPSNAP3B Gene

This gene is overexpressed in Heart - Left Ventricle (4.4) and Muscle - Skeletal (4.4).

Integrated Proteomics: protein expression from ProteomicsDB, MOPED, and MaxQB for NIPSNAP3B Gene

SOURCE GeneReport for Unigene cluster for NIPSNAP3B Gene Hs.429294

genes like me logo Genes that share expressions with NIPSNAP3B: view

In Situ Assay Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for NIPSNAP3B Gene

Orthologs for NIPSNAP3B Gene

This gene was present in the common ancestor of chordates.

Orthologs for NIPSNAP3B Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NIPSNAP3B 35
  • 99.19 (n)
  • 98.38 (a)
NIPSNAP3B 36
  • 98 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NIPSNAP3A 35
  • 87.85 (n)
  • 85.43 (a)
mouse
(Mus musculus)
Mammalia Nipsnap3b 16
Nipsnap3b 36
  • 78 (a)
ManyToMany
oppossum
(Monodelphis domestica)
Mammalia -- 36
  • 64 (a)
OneToMany
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 74 (a)
OneToMany
chicken
(Gallus gallus)
Aves -- 36
  • 64 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 57 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii nipsnap3 36
  • 52 (a)
OneToMany
zgc56466 35
sea squirt
(Ciona savignyi)
Ascidiacea CSA.8944 36
  • 34 (a)
OneToMany
Species with no ortholog for NIPSNAP3B:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NIPSNAP3B Gene

ENSEMBL:
Gene Tree for NIPSNAP3B (if available)
TreeFam:
Gene Tree for NIPSNAP3B (if available)

Paralogs for NIPSNAP3B Gene

Paralogs for NIPSNAP3B Gene

Selected SIMAP similar genes for NIPSNAP3B Gene using alignment to 3 proteins:

genes like me logo Genes that share paralogs with NIPSNAP3B: view

Variants for NIPSNAP3B Gene

Sequence variations from dbSNP and Humsavar for NIPSNAP3B Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type MAF
rs1559711 -- 104,766,767(-) TGATA(G/T)ATGAG intron-variant
rs2162116 -- 104,767,132(-) CAAAT(A/G)GGTGA intron-variant
rs2472475 -- 104,770,360(-) GACCC(A/G)AAGTC intron-variant
rs2472476 -- 104,769,675(-) TTCAT(A/G)AACTA intron-variant
rs2472477 -- 104,769,377(-) TTCTG(A/G)GTTCA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NIPSNAP3B Gene

Variant ID Type Subtype PubMed ID
nsv893672 CNV Gain+Loss 21882294
nsv521783 CNV Loss 19592680
esv2666191 CNV Deletion 23128226

Relevant External Links for NIPSNAP3B Gene

HapMap Linkage Disequilibrium report
NIPSNAP3B

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NIPSNAP3B Gene

Disorders for NIPSNAP3B Gene

Relevant External Links for NIPSNAP3B

Genetic Association Database (GAD)
NIPSNAP3B
Human Genome Epidemiology (HuGE) Navigator
NIPSNAP3B
genes like me logo Genes that share disorders with NIPSNAP3B: view

No data available for UniProtKB/Swiss-Prot for NIPSNAP3B Gene

Publications for NIPSNAP3B Gene

  1. Human and mouse ABCA1 comparative sequencing and transgenesis studies revealing novel regulatory sequences. (PMID: 11352567) Qiu Y. … Cheng J.-F. (Genomics 2001) 3 4
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4
  5. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson S.L. … O'Brien S.J. (PLoS ONE 2010) 3 48

Products for NIPSNAP3B Gene

Sources for NIPSNAP3B Gene

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