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NINJ2 Gene

protein-coding   GIFtS: 48
GCID: GC12M000673

Ninjurin 2

  See NINJ2-related disease
at  

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Ninjurin 21 2
Nerve Injury-Induced Protein 22 3
ninjurin-22

External Ids:    HGNC: 78251   Entrez Gene: 48152   Ensembl: ENSG000001718407   OMIM: 6072975   UniProtKB: Q9NZG73   

Export aliases for NINJ2 gene to outside databases

Previous GC identifers: GC12M000526 GC12M000543


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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Entrez Gene summary for NINJ2 Gene:
The protein encoded by this gene belongs to the ninjurin (for nerve injury induced) family. It is a cell surface
adhesion protein that is upregulated in Schwann cells surrounding the distal segment of injured nerve, and
promotes neurite outgrowth, thus may have a role in nerve regeneration after nerve injury. (provided by RefSeq,
Oct 2011)

GeneCards Summary for NINJ2 Gene:
NINJ2 (ninjurin 2) is a protein-coding gene. Diseases associated with NINJ2 include acrocallosal syndrome. An important paralog of this gene is NINJ1.

UniProtKB/Swiss-Prot: NINJ2_HUMAN, Q9NZG7
Function: Homophilic cell adhesion molecule that promotes axonal growth. May play a role in nerve regeneration and
in the formation and function of other tissues




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000012.11  NT_009759.17  NC_018923.2  
Regulatory elements:
   Regulatory transcription factor binding sites in the NINJ2 gene promoter:
         Bach2   Brachyury   FOXO3   GATA-1   C/EBPalpha   FOXO3b   HOXA5   FOXO4   FOXO3a   FOXO1   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNINJ2 promoter sequence
   Search Chromatin IP Primers for NINJ2

Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NINJ2


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 12p13   Ensembl cytogenetic band:  12p13.33   HGNC cytogenetic band: 12p13

NINJ2 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NINJ2 gene location

GeneLoc information about chromosome 12         GeneLoc Exon Structure

GeneLoc location for GC12M000673:  view genomic region     (about GC identifiers)

Start:
673,462 bp from pter      End:
772,945 bp from pter
Size:
99,484 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, Cloud-Clone Corp., eBioscience, and/or antibodies-online, Antibodies by EMD Millipore, R&D Systems, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, Cloud-Clone Corp, antibodies-online, and/or others.)
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UniProtKB/Swiss-Prot: NINJ2_HUMAN, Q9NZG7 (See protein sequence)
Recommended Name: Ninjurin-2  
Size: 142 amino acids; 15680 Da
Sequence caution: Sequence=AAH57766.2; Type=Erroneous initiation; Note=Translation N-terminally shortened;

Explore the universe of human proteins at neXtProt for NINJ2: NX_Q9NZG7

Explore proteomics data for NINJ2 at MOPED


See NINJ2 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins: NP_057617.2  
ENSEMBL proteins: 
 ENSP00000307552   ENSP00000380435   ENSP00000438831   ENSP00000415158  

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antibodies-online proteins for NINJ2 (2 products) 

 
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antibodies-online antibodies for NINJ2 (24 products) 

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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1 InterPro protein domain:
 IPR007007 Ninjurin

Graphical View of Domain Structure for InterPro Entry Q9NZG7

ProtoNet protein and cluster: Q9NZG7

1 Blocks protein domain: IPB007007 Ninjurin

UniProtKB/Swiss-Prot: NINJ2_HUMAN, Q9NZG7
Similarity: Belongs to the ninjurin family


Find genes that share domains with NINJ2           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: NINJ2_HUMAN, Q9NZG7
Function: Homophilic cell adhesion molecule that promotes axonal growth. May play a role in nerve regeneration and
in the formation and function of other tissues
Induction: By nerve injury; in Schwann cells

Phenotypes:
     3 GenomeRNAi human phenotypes for NINJ2:

 Decreased homologous recombina  Increased G1 DNA content  Increased gamma-H2AX phosphory 

Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for NINJ2

miRNA
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1 qRT-PCR Assays for microRNA that regulate NINJ2:
hsa-miR-3670
SwitchGear 3'UTR luciferase reporter plasmidNINJ2 3' UTR sequence
Inhib. RNA
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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from UniProtKB/Swiss-Prot
NINJ2_HUMAN, Q9NZG7: Membrane; Multi-pass membrane protein
Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
plasma membrane4
mitochondrion1
peroxisome1

Gene Ontology (GO): 2 cellular component terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0005887integral component of plasma membrane TAS10627596
GO:0016021integral component of membrane ----

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(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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    Custom Pathway & Disease-focused RT2 Profiler PCR Arrays for NINJ2
Interactions:

    Search GeneGlobe Interaction Network for NINJ2

Gene Ontology (GO): 4 biological process terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0007155cell adhesion ----
GO:0007158neuron cell-cell adhesion TAS10627596
GO:0007399nervous system development TAS10627596
GO:0042246tissue regeneration IEA--

Find genes that share ontologies with NINJ2           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for NINJ2



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for NINJ2 gene: 
NM_016533.4  

Unigene Cluster for NINJ2:

Ninjurin 2
Hs.656450  [show with all ESTs]
Unigene Representative Sequence: AK296012
5 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000305108(uc001qil.3) ENST00000397265 ENST00000542920 ENST00000433832(uc010sdr.2 uc010sds.2)
ENST00000537416
miRNA
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hsa-miR-3670
SwitchGear 3'UTR luciferase reporter plasmidNINJ2 3' UTR sequence
Inhib. RNA
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Predesigned siRNA for gene silencing in human, mouse, rat NINJ2
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  QuantiFast Probe-based Assays in human, mouse, rat NINJ2

Additional mRNA sequence: 

AF205633.1 AK296012.1 AK298043.1 AK315995.1 BC057766.1 

3 DOTS entries:

DT.212267  DT.95364223  DT.91828925 

Selected AceView cDNA sequences (see all 72):

BM354140 AA769168 AI333512 BU660855 AA450074 NM_016533 AI218723 AA743532 
CB243438 CA431480 W38567 R06257 AW016477 CA446244 AI393003 AI480214 
AA450131 AA765937 AF205633 AI095451 BU624562 BU656082 BU659990 CB995632 

GeneLoc Exon Structure


(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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NINJ2 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: TCTGTCTAAG
NINJ2 Expression
About this image


NINJ2 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 6) fully expand
 
 Bone (Muscoskeletal System)    fully expand to see all 5 entries
         HyStem+TGFbeta3+GDF5-induced SK11 cells
 
 Cartilage (Muscoskeletal System)    fully expand to see all 4 entries
         HyStem+TGFbeta3+GDF5-induced SK11 cells
 
 Skeletal Muscle (Muscoskeletal System)    fully expand to see all 2 entries
         Muscle Progenitor Cells Mandibular Arch Muscles
 
 Umbilical Cord (Extraembryonic Tissues)
         Umbilical Veins
 
 Blood (Hematopoietic System)
         Erythroblasts Hematopoietic Bone Marrow
NINJ2 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

NINJ2 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.656450

UniProtKB/Swiss-Prot: NINJ2_HUMAN, Q9NZG7
Tissue specificity: Widely expressed. In adult, higher expression in the bone marrow and peripheral blood
lymphocytes, medium in the lung, lymph node, thyroid, uterus, thymus, spleen, prostate and skeletal muscle, lower
in the liver, placenta, brain, heart and kidney. In embryo, higher expression in the thymus, heart and liver,
lower in the spleen, lung, brain and kidney

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In Situ
Assay Products:
 

 
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NINJ2

(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of animals.

Orthologs for NINJ2 gene from Selected species (see all 13)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Ninj21 , 5 ninjurin 21, 5 77(n)1
73.24(a)1
  6 (56.90 cM)5
298621  NM_016718.21  NP_057927.11 
 1200933505 
chicken
(Gallus gallus)
Aves NINJ21 ninjurin 2 68.26(n)
65.07(a)
  418151  XM_416382.4  XP_416382.3 
lizard
(Anolis carolinensis)
Reptilia NINJ26
ninjurin 2
59(a)
1 ↔ 1
5(12084608-12143471)
African clawed frog
(Xenopus laevis)
Amphibia CD360436.12   -- 75.52(n)    CD360436.1 
zebrafish
(Danio rerio)
Actinopterygii ninj21 ninjurin 2 67.5(n)
62.5(a)
  799267  XM_001339607.3  XP_001339643.2 
fruit fly
(Drosophila melanogaster)
Insecta CG143946
CG116376
(see all 3)
--
33(a)
20(a)
(see all 3)
many ↔ many
many ↔ many
(see all 3)
3R(8520868-8523265)
3L(18885483-18886378)


ENSEMBL Gene Tree for NINJ2 (if available)
TreeFam Gene Tree for NINJ2 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for NINJ2 gene
NINJ12  
1 SIMAP similar gene for NINJ2 using alignment to 4 protein entries:     NINJ2_HUMAN (see all proteins):
NINJ1

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for NINJ2 (see all 2073)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 12 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs735942171,2
C,F--673011(+) GCCAAC/TGAGTG 1 -- int14Minor allele frequency- T:0.10WA CSA EA 242
rs719432201,2
C--673059(+) CTGTT-/TCTGAGT 1 -- int11Minor allele frequency- TC:0.50CSA 2
rs583479101,2
C--673060(+) TGTTT-/CTGAGTT 1 -- int10--------
rs26079441,2
C,F,A,H--673078(-) ATTAGC/AAAAGC 1 -- int120Minor allele frequency- A:0.15NA NS EA WA 2344
rs1433174011,2
--673106(+) TCCTCA/GTTATA 1 -- int10--------
rs1176095261,2
F--673157(+) AACACA/GTGCCT 1 -- int11Minor allele frequency- G:0.02NA 120
rs116111731,2
C,F,H--673183(+) TGAAAG/ACCAGA 1 -- int19Minor allele frequency- A:0.21NA WA CSA EA 372
rs1512865141,2
C--673235(+) CATCCA/GCCTGC 1 -- int10--------
rs26079431,2
C,F,A,H--673245(-) TTAGTC/TCATTG 1 -- int128Minor allele frequency- T:0.16NS EA NA WA 3162
rs22790181,2
C,F,O,H--673283(-) GTCTTG/TCGCTT 1 -- int134Minor allele frequency- T:0.13EA NA NS WA 4830

HapMap Linkage Disequilibrium report for NINJ2 (673462 - 772945 bp)

Structural Variations
     Database of Genomic Variants (DGV) Selected variations for NINJ2 (see all 26):    About this table    
Variant IDTypeSubtypePubMed ID
esv2745365CNV Deletion23290073
esv989890CNV Deletion20482838
esv995402CNV Deletion20482838
esv1113146CNV Deletion17803354
esv1449891CNV Deletion17803354
esv2745362CNV Deletion23290073
esv2249356CNV Deletion18987734
esv2745366CNV Deletion23290073
esv2745361CNV Deletion23290073
esv2745360CNV Deletion23290073

Site Specific Mutation Identification with PCR Assays
SeqTarget long-range PCR primers for resequencing NINJ2
DNA2.0 Custom Variant and Variant Library Synthesis for NINJ2

(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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OMIM gene information: 607297    OMIM disorders: --

1 disease for NINJ2:    
About MalaCards
acrocallosal syndrome

1 disease from the University of Copenhagen DISEASES database for NINJ2:
Acrocallosal syndrome

Find genes that share disorders with NINJ2           About GenesLikeMe

Genetic Association Database (GAD): NINJ2
Human Genome Epidemiology (HuGE) Navigator: NINJ2 (4 documents)

Export disorders for NINJ2 gene to outside databases

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NINJ2 gene, integrated from 10 sources (see all 14):
(articles sorted by number of sources associating them with NINJ2)
    Utopia: connect your pdf to the dynamic
world of online information

  1. Ninjurin2, a novel homophilic adhesion molecule, is expressed in mature sensory and enteric neurons and promotes neurite outgrowth. (PubMed id 10627596)1, 2, 3 Araki T. and Milbrandt J. (J. Neurosci. 2000)
  2. Failure to validate association between 12p13 variants and ischemic stroke. (PubMed id 20410525)1, 4 (N. Engl. J. Med. 2010)
  3. Genomewide association studies of stroke. (PubMed id 19369658)1, 4 Ikram M.A....Wolf P.A. (N. Engl. J. Med. 2009)
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S.... Malek J. (Genome Res. 2004)
  5. NINJ2 SNP may affect the onset age of first-ever ischemic stroke without increasing silent cerebrovascular lesions. (PubMed id 22429733)1 Kim D.E....Cha M.H. (BMC Res Notes 2012)
  6. The rs11833579 and rs12425791 polymorphisms and risk of ischemic stroke in an Asian population: a meta-analysis. (PubMed id 22795341)1 Lian G....Li S. (Thromb. Res. 2012)
  7. Association between 12p13 SNPs rs11833579/rs12425791 near NINJ2 gene and ischemic stroke in East Asian population: evidence from a meta-analysis. (PubMed id 22297388)1 Li B.H....Li J.C. (J. Neurol. Sci. 2012)
  8. Genetic polymorphisms of a novel vascular susceptibility gene, Ninjurin2 (NINJ2), are associated with a decreased risk of Alzheimer's disease. (PubMed id 21674003)1 Lin K.P....Chen Y.C. (PLoS ONE 2011)
  9. No evidence for association of 12p13 SNPs rs11833579 and rs12425791 within NINJ2 gene with ischemic stroke in Chinese Han population. (PubMed id 21376321)1 Ding H....Wang D.W. (Atherosclerosis 2011)
  10. NINJ2 polymorphism is associated with ischemic stroke in Chinese Han population. (PubMed id 21722921)1 Wan X.H....Wang X.F. (J. Neurol. Sci. 2011)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 4815 HGNC: 7825 AceView: NINJ2 Ensembl:ENSG00000171840 euGenes: HUgn4815
ECgene: NINJ2 H-InvDB: NINJ2

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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NameDescription
PharmGKB entry for NINJ2 Pharmacogenomics, SNPs, Pathways

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NINJ2 gene:
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(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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 EMD Millipore genomic analysis products

  
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  Search antibodies-online for peptides for NINJ2
 antibodies-online proteins for NINJ2 (2 products)
       
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