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Aliases for NIFK-AS1 Gene

Subcategory (RNA class) for NIFK-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NIFK-AS1 Gene

  • NIFK Antisense RNA 1 2 3 5

External Ids for NIFK-AS1 Gene

Previous GeneCards Identifiers for NIFK-AS1 Gene

  • GC02P122408

Summaries for NIFK-AS1 Gene

GeneCards Summary for NIFK-AS1 Gene

NIFK-AS1 (NIFK Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NIFK-AS1 Gene

Genomics for NIFK-AS1 Gene

Regulatory Elements for NIFK-AS1 Gene

Enhancers for NIFK-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH02F121647 1.1 ENCODE 0.8 +0.3 347 5.1 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1 NIFK TSN LINC01823 CLASP1 NIFK-AS1 GC02M121659
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NIFK-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NIFK-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000121102 -250 4001 HDGF PKNOX1 ARNT CREB3L1 MLX WRNIP1 ZFP64 ARID4B SIN3A YBX1

Genomic Location for NIFK-AS1 Gene

Chromosome:
2
Start:
121,649,650 bp from pter
End:
121,728,560 bp from pter
Size:
78,911 bases
Orientation:
Plus strand

Genomic View for NIFK-AS1 Gene

Genes around NIFK-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NIFK-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NIFK-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NIFK-AS1 Gene

Proteins for NIFK-AS1 Gene

Post-translational modifications for NIFK-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NIFK-AS1 Gene

Domains & Families for NIFK-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NIFK-AS1 Gene

Function for NIFK-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NIFK-AS1 Gene

Localization for NIFK-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NIFK-AS1 Gene

Pathways & Interactions for NIFK-AS1 Gene

SuperPathways for NIFK-AS1 Gene

No Data Available

Interacting Proteins for NIFK-AS1 Gene

Gene Ontology (GO) - Biological Process for NIFK-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NIFK-AS1 Gene

Transcripts for NIFK-AS1 Gene

mRNA/cDNA for NIFK-AS1 Gene

(5) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NIFK-AS1 Gene

No ASD Table

Relevant External Links for NIFK-AS1 Gene

GeneLoc Exon Structure for
NIFK-AS1
ECgene alternative splicing isoforms for
NIFK-AS1

Expression for NIFK-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NIFK-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NIFK-AS1 Gene

This gene is overexpressed in Brain - Spinal cord (cervical c-1) (x4.7).
genes like me logo Genes that share expression patterns with NIFK-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NIFK-AS1 Gene

Orthologs for NIFK-AS1 Gene

Evolution for NIFK-AS1 Gene

ENSEMBL:
Gene Tree for NIFK-AS1 (if available)
TreeFam:
Gene Tree for NIFK-AS1 (if available)

No data available for Orthologs for NIFK-AS1 Gene

Paralogs for NIFK-AS1 Gene

No data available for Paralogs for NIFK-AS1 Gene

Variants for NIFK-AS1 Gene

Sequence variations from dbSNP and Humsavar for NIFK-AS1 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type
rs10169883 -- 121,659,659(+) TTTCT(C/T)ATCTG intron-variant
rs10172415 -- 121,668,923(+) caaaa(C/T)ggcat intron-variant
rs10174490 -- 121,674,684(+) cttca(A/C)ttaga intron-variant
rs10187001 -- 121,691,144(+) CTCCC(A/G)GCCTC intron-variant
rs10187497 -- 121,661,531(+) AGGTC(A/G)GTAGA intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NIFK-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv979113 CNV duplication 23825009
nsv963715 CNV duplication 23825009
nsv834351 CNV loss 17160897
nsv582808 CNV gain 21841781
nsv459163 CNV gain 19166990
nsv1011665 CNV gain 25217958
esv3592217 CNV gain 21293372
esv3592216 CNV loss 21293372
esv3592214 CNV gain 21293372
esv3592209 CNV gain 21293372
esv3560044 CNV deletion 23714750
esv2759088 CNV gain 17122850
esv2671161 CNV deletion 23128226

Relevant External Links for NIFK-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NIFK-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NIFK-AS1 Gene

Disorders for NIFK-AS1 Gene

Relevant External Links for NIFK-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NIFK-AS1

No disorders were found for NIFK-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NIFK-AS1 Gene

Publications for NIFK-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NIFK-AS1 Gene

Sources for NIFK-AS1 Gene

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