NHLH1 Gene
protein-coding GIFtS : 52
GCID: GC01 P160336
nescient helix loop helix 1 (Previous symbol: HEN1 )
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Aliasesfor NHLH1 gene
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc ,
7 Ensembl ,
8 DME ,
9 miRBase ,
and/or 10 fRNAdb )About This Section Aliases Nescient Helix Loop Helix 1 1 2 3 Class A Basic Helix-Loop-Helix Protein 352 3 HEN11 2 3 5 HEN-12 3 BHLHa351 NSCL-12 3 NSCL1 2 Helix-Loop-Helix Protein 12 NSCL11 2 BHLHA353
Export aliases for NHLH1 gene to outside databases Previous GC identifers: GC01P158128 GC01P156069 GC01P157114 GC01P157553 GC01P157149 GC01P158603 GC01P131693
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Summariesfor NHLH1 gene (According to Entrez Gene ,
Tocris Bioscience ,
Wikipedia's
Gene Wiki ,
PharmGKB ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
About This Section Entrez Gene summary for NHLH1 : The helix-loop-helix (HLH) proteins are a family of putative transcription factors, some of which have been shown to play an important role in growth and development of a wide variety of tissues and species. Four members of this family have been clearly implicated in tumorigenesis via their involvement in chromosomal translocations in lymphoid tumors: MYC (MIM 190080), LYL1 (MIM 151440), E2A (MIM 147141), and SCL (MIM 187040).(supplied by OMIM, Nov 2002) UniProtKB/Swiss-Prot: HEN1_HUMAN, Q02575 Function : May serve as DNA-binding protein and may be involved in the control of cell-type determination, possiblywithin the developing nervous system Gene Wiki entry for NHLH1
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Genomic Viewsfor NHLH1 gene
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 37) ,
and/or miRBase ,
Genomic Views according to
UCSC (hg19) and
Ensembl (release 69) ,
Regulatory elements and Epigenetics data according to
QIAGEN ,
SABiosciences , and/or
SwitchGear Genomics )About This Section RefSeq DNA sequence: NC_000001.10 NC_018912.1 NT_004487.19 Regulatory elements: SABiosciences Regulatory transcription factor binding sites in the NHLH1 gene promoter: CUTL1 Meis-1b C/EBPalpha GATA-2 AREB6 HOXA5 Meis-1a Meis-1 Other transcription factors Search SABiosciences Chromatin IP Primers for NHLH1 Epigenetics: QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NHLH1
Genomic Location: Genomic View : UCSC Golden Path with GeneCards custom track Entrez Gene cytogenetic band: 1q22 Ensembl cytogenetic band: 1q23.2 HGNC cytogenetic band: 1q22 NHLH1 Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc information about chromosome 1 GeneLoc Exon Structure
GeneLoc location for GC01P160336: view genomic region
(about GC identifiers )
Start:
160,336,857 bp from pter
End:
160,342,638 bp from pter
Size:
5,782 bases
Orientation:
plus strand
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Proteinsfor NHLH1 gene
(According to
1 UniProtKB ,
HORDE ,
neXtProt ,
Ensembl ,
and/or Reactome ,
Modification sites according to 2 PhosphoSitePlus ,
Specific Peptides from DME ,
Protein expression images according to data from SPIRE MOPED and PaxDb ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from
EMD Millipore ,
R&D Systems ,
GenScript ,
Enzo Life Sciences ,
OriGene ,
Novus Biologicals ,
Sino Biological ,
ProSpec , and/or
Uscn ,
Biochemical Assays by
EMD Millipore ,
R&D Systems ,
OriGene ,
GenScript ,
Cell Signaling Technology ,
Enzo Life Sciences , and/or
Uscn ,
Ontologies according to Gene
Ontology Consortium 01 Mar 2013 and
Entrez Gene ,
Antibodies by
EMD Millipore ,
R&D Systems ,
GenScript ,
Cell Signaling Technology ,
OriGene ,
Novus Biologicals ,
Thermo Fisher Scientific ,
Abcam , and/or
Uscn )
About This Section UniProtKB/Swiss-Prot: HEN1_HUMAN, Q02575 (See
protein sequence )Recommended Name: Helix-loop-helix protein 1 Size : 133 amino acids; 14618 Da
Subunit : Efficient DNA binding requires dimerization with another bHLH protein
Subcellular location : Nucleus (By similarity)Explore the universe of human proteins at neXtProt for NHLH1: NX_Q02575 Post-translational modifications:
View modification sites using PhosphoSitePlus 2 View neXtProt modification sites for NX_Q02575 NHLH1 Protein expression data from MOPED and PaxDb : About this image
REFSEQ proteins: NP_005589.1 ENSEMBL proteins: ENSP00000302189 Human Recombinant Protein Products: Gene Ontology (GO): 1 cellular component term (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0005634 nucleus
IEA --
NHLH1 for ontologies About GeneDecksing NHLH1 Antibody Products: Assay Products for NHLH1:
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Protein
Domains / Familiesfor NHLH1 gene (According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
About This Section
NHLH1 for domains About GeneDecksing 1 InterPro domain/family :
Graphical View of Domain Structure for InterPro Entry Q02575 ProtoNet protein and cluster: Q02575
1 Blocks protein family : IPB001092 Basic helix-loop-helix dimerization domain bHLH UniProtKB/Swiss-Prot: HEN1_HUMAN, Q02575 Similarity : Contains 1 bHLH (basic helix-loop-helix) domain
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Functionfor NHLH1 gene
(According to 1 UniProtKB ,
Genatlas ,
LifeMap Discovery™ ,
IUBMB , and/or
2 DME ,
Human phenotypes from GenomeRNAi ,
Animal models from MGI Mar 06 2013,
bound targets from SABiosciences ,
miRNA Gene Targets from miRTarBase
shRNA from
OriGene ,
RNAi from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
microRNA from QIAGEN ,
Gene Editing from DNA2.0 ,
Clones from EMD Millipore ,
OriGene ,
SwitchGear Genomics ,
GenScript ,
Sino Biological ,
DNA2.0 ,
and Vector BioLabs ,
Cell Lines from GenScript ,
LifeMap BioReagents ,
In Situ Hybridization Assays from Advanced Cell Diagnostics ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene .)
About This Section Function Summary: UniProtKB/Swiss-Prot: HEN1_HUMAN, Q02575 Function : May serve as DNA-binding protein and may be involved in the control of cell-type determination, possiblywithin the developing nervous system
Genatlas biochemistry entry for NHLH1 : nescient helix loop helix protein 1,binding the E-box motif,transciently expressed during neuro-genesis,involved in retinal development. Also expressed in neuroblastoma cell line Clone Products: Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NHLH1 (NM_005598 ) Browse Sino Biological Human cDNA Clones DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NHLH1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NHLH1
In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NHLH1
Gene Ontology (GO): 2 molecular function terms (GO ID links to tree view) : About this table
GO ID Qualified GO term Evidence PubMed IDs GO:0003677 DNA binding
IEA -- GO:0046983 protein dimerization activity
IEA --
NHLH1 for ontologies About GeneDecksing Animal Models: Mouse knock-out Nhlh1 tm1Irk for NHLH1 4 MGI mutant phenotypes (inferred from 2 alleles ) (MGI details for Nhlh1) :
NHLH1 for phenotypes About GeneDecksing
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Pathways & Interactionsfor NHLH1 gene
(Pathways according to
EMD Millipore ,
R&D Systems ,
Cell Signaling Technology ,
KEGG ,
PharmGKB ,
BioSystems ,
Reactome ,
Tocris Bioscience ,
GeneGo (Thomson Reuters) ,
QIAGEN ,
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Interaction Networks according to
SABiosciences ,
and/or STRING ,
Interactions according to 1 UniProtKB ,
2 MINT ,
3 I2D , and/or
4 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Mar 2013 via
Entrez Gene) .
About This Section Unified GeneCards pathways   About this table See pathways by source Super-pathway contained gene-specific pathways 1 Transcription factors in neurogenesis
Pathway sources See GeneCards unified pathways Show all pathways 1 EMD Millipore Pathway for NHLH1
NHLH1 for pathways About GeneDecksing Interactions: SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NHLH1 STRING Interaction
Network Preview (showing 5 interactants - click image to see 9)5/9 Interacting proteins for NHLH1 (Q02575 3 ENSP00000302189 4 ) via UniProtKB, MINT, STRING , and/or I2D (see all 9 )About this table Gene Ontology (GO): 4 biological process terms (GO ID links to tree view) : About this table
NHLH1 for ontologies About GeneDecksing
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Drugs & Compoundsfor NHLH1 gene (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
EMD Millipore , Tocris Bioscience
HMDB ,
BitterDB , and/or
Novoseek , and Drugs according to
DrugBank ,
Enzo Life Sciences , and/or
PharmGKB , with drugs/clinical trials/news
search links to CenterWatch )
About This Section Browse Tocris compounds for NHLH1 Search CenterWatch for drugs/clinical trials and news about NHLH1 / HEN1
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Transcriptsfor NHLH1 gene (Secondary structures according to
fRNAdb ,
GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 235 Homo sapiens; Mar 10 2013) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
transcript ids from Ensembl
with links to UCSC ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from
EMD Millipore ,
siRNAs from
OriGene ,
QIAGEN ,
shRNA from
OriGene ,
microRNA from QIAGEN ,
Tagged/untagged cDNA clones from
OriGene ,
SwitchGear Genomics ,
GenScript ,
DNA2.0 ,
Vector BioLabs ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN
)About This Section REFSEQ mRNAs for NHLH1 gene: NM_005598.3 Unigene Cluster for NHLH1:
Nescient helix loop helix 1 Hs.30956 [show with all ESTs ] Unigene Representative Sequence: M96739 1 Ensembl transcript including schematic representation, and UCSC links where relevant : ENST00000302101 (uc001fwa.2 ) Clone Products: OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1 (see all 3 ) OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1OriGene custom cloning services – gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling GenScript: all cDNA clones in your preferred vector: NHLH1 (NM_005598 ) DNA2.0 Custom Codon Optimized Gene
Synthesis Service for NHLH1 Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NHLH1
Additional cDNA sequence: AK313700.1 BC013789.1 BT006859.1 M96739.1
1 DOTS entry : DT.80102035
19 AceView cDNA sequences :
H09935 BX113024 AI733105 AA910905 NM_005598 AI733300 BT006859 BU187004 BC013789 AI791602 AI793327 BU173483 M96739 AA932591 AI951857 H09936 BE778250 BI916874 AW090793 GeneLoc Exon Structure
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Expression for NHLH1 gene
(RNA expression data according to
H-InvDB ,
NONCODE ,
miRBase , and
RNAdb ,
Expression images according to data from
BioGPS ,
Illumina Human BodyMap , and
CGAP
SAGE ,
Sets of similar genes according to GeneDecks ,
in vivo and in vitro expression data from LifeMap Discovery™ ,
plus additional links to
Genevestigator , and/or
SOURCE , and/or
BioGPS , and/or
UniProtKB ,
PCR Arrays from
SABiosciences ,
Primers from
OriGene ,
SABiosciences , and/or
QIAGEN ,
In Situ Hybridization Assays from Advanced Cell Diagnostics )
About This Section NHLH1 expression in normal human tissues (normalized intensities) See probesets specificity/sensitivity at GeneAnnot About this image BioGPS CGAP TAG: CCCTTTGCTT
About this image NHLH1 expression in embryonic tissues and stem cells Expression by the Database of Embryonic development, Stem cell research, and
Regenerative medicine About this table See NHLH1 Protein Expression from SPIRE MOPED and PaxDB Genevestigator expression for NHLH1 SOURCE GeneReport for Unigene cluster: Hs.30956 SABiosciences Custom PCR Arrays for NHLH1 Primer Products: OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NHLH1Browse OriGene validated miRNA SYBR primer pairs SABiosciences RT2 qPCR Primer Assay in human , mouse , rat NHLH1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NHLH1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NHLH1 In Situ Assay Products: Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NHLH1
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Orthologsfor NHLH1 gene
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
,
5 MGI Mar 06 2013,
with possible further links to
Flybase
and/or
WormBase ,
and/or
6 Ensembl pan taxonomic compara ,
Gene Trees according to Ensembl and
TreeFam )
About This Section
This gene was present in the common ancestor of animals.
Orthologs for NHLH1 gene from 4/15 species (see all 15 ) About this table
ENSEMBL Gene Tree for NHLH1 (if available)TreeFam Gene Tree for NHLH1 (if available)
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Paralogsfor NHLH1 gene (Paralogs according to
1 HomoloGene , 2 Ensembl , and 3 SIMAP , Pseudogenes according to 4 Pseudogene.org Build 68)About This Section Paralogs for NHLH1 gene TCF24 2 TWIST1 2 TWIST2 2 TAL1 2 HAND2 2 TCF23 2 LYL1 2 NHLH2 2 TAL2 2 TCF15 2 SCXB 2 TCF21 2 HAND1 2 MSC 2 SCXA 2 10 SIMAP similar genes for NHLH1 using alignment to 2 protein entries: HEN1_HUMAN (see all proteins ):SCL TAL1 tal-1 TAL2 NHLH2 FERD3L LYL1 HAND1 TCF15 PTF1A
NHLH1 for paralogs About GeneDecksing
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Genomic Variantsfor NHLH1 gene (SNPs/Variants according to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE ,
UniProtKB , and
DNA2.0 ,
Linkage Disequilibrium by HapMap ,
Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants , Mutations from the Human Gene
Mutation Database (HGMD) and the Locus Specific Mutation
Databases (LSDB) , Blood group antigen gene mutations by BGMUT ,
Resequencing Primers from QIAGEN ,
Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences )
About This Section
Genomic Data Transcription Related Data Allele Frequencies SNP ID Valid Clinical significance Chr 1 pos Sequence # AA Chg Type More # Allele freq Pop Total sample More
HapMap Linkage Disequilibrium report for NHLH1 (160336857 - 160342638 bp)
Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions) Database of Genomic Variants (DGV) variations for NHLH1: --
SABiosciences Cancer Mutation PCR Assays
QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NHLH1
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Disorders
/ Diseasesfor NHLH1 gene
(in which this Gene is Involved, According to MalaCards ,
OMIM, UniProtKB ,
the University of Copenhagen DISEASES
database , Novoseek ,
Genatlas , GeneTests ,
GAD ,
HuGE Navigator ,
and/or TGDB .)
About This Section
NHLH1 for disorders About GeneDecksing
OMIM gene information: 162360
OMIM disorders : --3 diseases for NHLH1 : About MalaCards neuroblastoma retinitis neuronitis 1 Novoseek disease relationship for NHLH1 gene About this table
Disease
-log (P-Val)
Hits
PubMed IDs for Articles with Shared Sentences (# sentences)
tumors
0
1
17507989 (1)
Export disorders for NHLH1 gene to outside databases
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Publicationsfor NHLH1 gene (in
PubMed .
Associations of this gene to articles via
1 Entrez Gene ,
2 UniProtKB/Swiss-Prot ,
3 HGNC ,
4 GAD ,
5 PharmGKB ,
6 HMDB ,
7 DrugBank ,
8 UniProtKB/TrEMBL ,
9 Novoseek , and/or
10 fRNAdb )
About This Section PubMed articles for NHLH1 gene, integrated from 9 sources (see all 11 ): (articles sorted by number of sources associating them with NHLH1) Utopia : connect your pdf to the dynamic world of online information
A comparative structural characterization of the human NSCL-1 and NSCL-2 genes. Two basic helix-loop-helix genes expressed in the developing nervous system. (PubMed id 1328219) 1 , 2 , 9 Lipkowitz S....Kirsch I.R. (1992) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 1 , 2 Gerhard D.S....Malek J. (2004) HEN1 and HEN2: a subgroup of basic helix-loop-helix genes that are coexpressed in a human neuroblastoma. (PubMed id 1528853) 1 , 2 Brown L.... Baer R. (1992) Regulation of neurogenesis by interactions between HEN1 and neuronal LMO proteins. (PubMed id 10603358) 1 , 9 Bao J....Gautier J. (2000) Ubiquitin-mediated proteolysis of HuR by heat shock. (PubMed id 19322201) 1 Abdelmohsen K....Gorospe M. (2009) Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PubMed id 16344560) 1 Kimura K.... Sugano S. (2006) The LIM-only protein LMO4 modulates the transcriptional activity of HEN1. (PubMed id 12878195) 1 Manetopoulos C....Axelson H. (2003) Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932) 1 Strausberg R.L....Marra M.A. (2002) Molecular characterization of NSCL, a gene encoding a helix-loop-helix protein expressed in the developing nervous system. (PubMed id 1729708) 1 Begley C.G....Kirsch I.R. (1992) NSCL-1 and NSCL-2 synergistically determine the fate of GnRH-1 neurons and control necdin gene expression. (PubMed id 15470499) 9 Kruger M....Braun T. (2004)
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External Searches for NHLH1 gene
(in PubMed ,
OMIM , and NCBI Bookshelf ) About This Section
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Genome Databases showing NHLH1 gene
(According to
Entrez Gene ,
HGNC ,
AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
Kegg ,
and/or
H-InvDB )
About This Section
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Other Databases showing NHLH1 gene
(According to HUGE )
About This Section --
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Specialized Databases showing NHLH1 gene (According to PharmGKB ,
ATLAS , HORDE , IMGT , LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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About This Section Patent Information for NHLH1 gene: Search GeneIP for patents involving NHLH1 GeneCards and IP: Japan Patent Office Licenses GeneCards European Patent Office Licenses GeneCards Improving the IP Search
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Productsfor NHLH1 gene (Antibodies, recombinant proteins, and assays from EMD Millipore , R&D Systems , OriGene , QIAGEN , GenScript , Cell Signaling Technology , SABiosciences , Novus Biologicals , Sino Biological , Enzo Life Sciences , Abcam , ProSpec , Uscn , Thermo Fisher Scientific , Gene Editing from DNA2.0 , Clones from EMD Millipore , OriGene , GenScript , Sino Biological , DNA2.0 , SwitchGear Genomics , Vector BioLabs , Cell lines from GenScript and LifeMap BioReagents , PCR Arrays from SABiosciences , Drugs and/or compounds from EMD Millipore , Tocris Bioscience , and/or
Enzo Life Sciences ), In Situ Hybridization Assays from Advanced Cell Diagnostics About This Section
Browse OriGene Antibodies OriGene shRNA RFP for NHLH1 OriGene 29mer shRNA kits in GFP-retroviral vector in human , mouse , rat for NHLH1 OriGene genome-wide validated SYBR primer pairs in human , mouse , rat for NHLH1 OriGene Protein Over-expression Lysate for NHLH1 Browse OriGene Fluorogenic Cell Assay Kits OriGene siRNA for NHLH1 Browse 3'-UTR reporter clones for miRNA target validation OriGene untagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1 OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human , mouse , rat for NHLH1 Browse OriGene GFP tagged cDNA clones in CMV expression vector Browse OriGene MicroRNA Expression Plasmids Browse OriGene basic RS shRNAs Browse OriGene validated miRNA SYBR primer pairs OriGene Purified Protein for NHLH1 OriGene custom cloning services - gene synthesis, subcloning, mutagenesis,
variant library, vector shuttling OriGene Custom Antibody Services for NHLH1 OriGene Custom Protein Services for NHLH1 OriGene Custom Immunoassay Development
QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NHLH1 QIAGEN SeqTarget long-range PCR primers in human , mouse , rat for resequencing NHLH1 QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NHLH1 QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human , mouse , rat NHLH1 QIAGEN QuantiFast Probe-based Assays in human , mouse , rat NHLH1 QIAGEN QuantiTect SYBR Green Assays in human , mouse , rat NHLH1
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NHLH1 Proteins, Antibodies, CLIAs, and ELISAs
Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NHLH1
Search ThermoFisher Antibodies for NHLH1
Vector BioLabs ready-to-use adenovirus/AAV for human , mouse , rat NHLH1
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