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Aliases & Descriptions for NGFR
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| CD271 1, 2 | | Gp80-LNGFR 2, 3 | | TNFRSF16 1, 2, 3, 5 | | p75(NTR) 2 | | p75NTR 1, 2 |
| | | Descriptions |
|---|
| CD271 antigen 3 | | Low affinity neurotrophin receptor p75NTR 3 | | Low-affinity nerve growth factor receptor 2, 3 | | NGF receptor 3 | | low affinity nerve growth factor receptor 2 | | nerve growth factor receptor 2 | | nerve growth factor receptor (TNFR superfamily, member 16) 2 | | p75 ICD 3 |
|
| | Search outside databases for aliases for NGFR genePrevious GC identifers: GC17P047283 GC17P050052 GC17P047914 GC17P048047 |
Summaries for NGFR(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NGFR: Nerve growth factor receptor contains an extracellular domain containing four 40-amino acid repeats with 6 cysteine residues at conserved positions followed by a serine/threonine-rich region, a single transmembrane domain, and a 155-amino acid cytoplasmic domain. The cysteine-rich region contains the nerve growth factor binding domain. [provided by RefSeq] UniProtKB/Swiss-Prot: TNR16_HUMAN, P08138Function: Low affinity receptor which can bind to NGF, BDNF, NT-3, and NT-4. Can mediate cell survival as well as cell death of neural cellsGene Wiki entry for NGFR (Low_affinity_nerve_growth_factor_receptor) |
Genomic Location for NGFR
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NGFR gene 
Entrez Gene cytogenetic band: 17q21-q22 Ensembl cytogenetic band: 17q21.33 HGNC cytogenetic band: 17q21-q22NGFR Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 17 GeneLoc Exon Structure GeneLoc location for GC17P044927:
(about GC identifiers)
Start:
|
44,927,654 bp from pter |
End:
|
44,947,360 bp from pter |
Size:
|
19,707 bases |
Orientation:
|
plus strand |
RefSeq DNA sequence:- NC_000017.9 NT_010783.14
| Proteins for NGFR
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: TNR16_HUMAN, P08138 (See
protein sequence)Recommended Name: Tumor necrosis factor receptor superfamily member 16 precursor Size: 427 amino acids; 45183 Da
Subunit: Homodimer; disulfide-linked. Interacts with p75NTR-associated cell death executor. Interacts with TRAF2, TRAF4, TRAF6, PTPN13 and RANBP9. Interacts through TRAF6 with SQSTM1 which bridges NGFR to NTRK1. Interacts with BEX1 and NGFRAP1/BEX3. Interacts with KIDINS220 and NTRK1. Can form a ternary complex with NTRK1 and KIDINS220 and this complex is affected by the expression levels of KIDINS220. An increase in KIDINS220 expression leads to a decreased association of NGFR and NTRK1 (By similarity). Interacts with LINGO1
Subcellular location: Membrane; Single-pass type I membrane proteinPost-translational modifications:
N- and O-glycosylated1
O-linked glycans consist of Gal(1-3)GalNAc core elongated by 1 or 2 NeuNAc1
Phosphorylated on serine residues1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_002498.1
ENSEMBL proteins: ENSP00000172229
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
4 Gene Ontology (GO) cellular component terms (links to tree view): About this table
Antibodies for NGFR:  | Invitrogen Antibodies for NGFR |  | Millipore Mono- and Polyclonal Antibodies for the study of NGFR |  | Sigma-Aldrich Antibody Arrays and Antibodies for NGFR |  | R&D Systems Antibodies for NGFR (NGF R/TNFRSF16) |  | Cell Signaling Technology (CST) Antibodies for NGFR  (p75NTR) |  | Antibodies from Abcam (p75 NGF Receptor), each with their AbpromiseSM |  | Monoclonal and Polyclonal Antibodies from Abnova (NGFR) |  | Novus Biologicals Antibodies for NGFR |
Assays for NGFR: | Protein
Domains/ Families for NGFR(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry P08138
ProtoNet protein and cluster: P08138 2 Blocks protein families: IPB000488 Death domain IPB001368 TNFR/CD27/30/40/95 cysteine-rich region
UniProtKB/Swiss-Prot: TNR16_HUMAN, P08138Domain: Death domain is responsible for interaction with RANBP9Domain: The extracellular domain is responsible for interaction with NTRK1 (By similarity)Similarity: Contains 1 death domainSimilarity: Contains 4 TNFR-Cys repeats | Gene Function for NGFR
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002507
Applied Biosystems Silencer® siRNAs for NGFR
Sigma-Aldrich siRNA and siRNA Panels for NGFR  Sigma-Aldrich shRNA Panels and shRNA for NGFR  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_002507                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002507                                  untagged cDNA clone in CMV expression vector: NM_002507 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002507
UniProtKB/Swiss-Prot: TNR16_HUMAN, P08138Function: Low affinity receptor which can bind to NGF, BDNF, NT-3, and NT-4. Can mediate cell survival as well as cell death of neural cellsGenatlas biochemistry entry for NGFR:nerve growth factor receptor p75,low affinity (tumor necrosis factor receptor,TNFR superfamily,member 16),see also NTRK115/21 MGI mutant phenotypes (inferred from 3 alleles ) (MGI details for Ngfr) (see all 21
):
4 Gene Ontology (GO) molecular function terms (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0005030 | neurotrophin receptor activity |
IEA | -- | | GO:0005035 | death receptor activity |
IEA | -- | | GO:0005515 | protein binding |
IEA | -- | | GO:0048406 | nerve growth factor binding |
IEA | -- | About this table | Pathways & Interactions for NGFR
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/20 Sigma-Aldrich "Your Favorite Gene" Pathways for NGFR (Your Favorite Gene powered by Ingenuity) (see all 20
) 
Gene Network CentralTM Interacting Genes and Proteins Network for NGFR 
5/124 Interacting proteins for NGFR (ENSP000001722293 P081381, 2) via UniProtKB, MINT, and/or STRING (see all 124
)About this table
5/18 Gene Ontology (GO) biological process terms (links to tree view) (see all 18
): About this table
|
Drugs & Compounds for NGFR(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for NGFR |
Compounds for NGFR available from Tocris Bioscience
| Compound | Action |
CAS
number |
|---|
| BDNF (human) | Activates TrkB and p75 receptors | [218441-99-7] | | Ro 08-2750 | Inhibits NGF binding to p75NTR and TrkA | [37854-59-4] | | NTR 368 | p75NTR fragment; induces apoptosis | [197230-90-3] | About this table
10/41 Novoseek chemical compound relationships for NGFR gene (see all 41
)
| Compound |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| tyrosine |
68.73 |
81 |
12218049 (2), 10386964 (1), 10708759 (1), 11359788 (1) (see all 67) |
| ceramide |
42.85 |
16 |
15264225 (2), 11438587 (2), 15264216 (2), 10398299 (1) (see all 10) |
| phosphotyrosine |
32.36 |
8 |
8563936 (2), 7541035 (1), 8529673 (1), 7518293 (1) |
| phosphatidylinositol |
27.57 |
3 |
1382475 (1), 17666398 (1), 11312266 (1) |
| saporin |
25.86 |
1 |
7738592 (1) |
| tellurium |
25.16 |
4 |
1319505 (2), 7723622 (1) |
| mastoparan |
23.90 |
4 |
2172020 (2), 7986806 (2) |
| dbc-amp |
21.74 |
1 |
7526237 (1) |
| estradiol valerate |
18.58 |
3 |
15941472 (2), 15795180 (1) |
| matrigel |
10.59 |
3 |
9487024 (1), 9381967 (1), 8665526 (1) |
About this table
|
Transcripts for NGFR(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_002507
Sigma-Aldrich siRNA and siRNA Panels for NGFR  Sigma-Aldrich shRNA Panels and shRNA for NGFR  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_002507 REFSEQ mRNAs for NGFR gene: NM_002507.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_002507               OriGene GFP tagged cDNA clone in CMV expression vector: NM_002507                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_002507                                  untagged cDNA clone in CMV expression vector: NM_002507  Additional cDNA sequence: AK125088.1 BC052797.1 3 DOTS entries: DT.452503 DT.101968457 DT.75156349 24/81 AceView cDNA sequences (see all 81
):BU689510 BQ718679 BM662493 CD516275 CK299927 CA412447 BP364215 BM980961 BX111500 AU141128 CD514641 BQ639556 BV196211 CD518230 BU931390 BC050309 BM695278 C04752 BG982676 BV196212 M14764 BU931631 AU130851 CD558571
highest scoring ESTs for NGFR:M14764 AA378128 AA378259 AA378513 AA378573 AA378883 AA971053 AI143345 AI609803 AI698073 Unigene Clusters for NGFR: Nerve growth factor receptor (TNFR superfamily, member 16) Hs.415768 [show with all ESTs], Hs.681726 [show with all ESTs]Unigene Representative Sequences: BC050309, AK125088
GeneLoc Exon Structure
1 Ensembl transcript including schematic representation: ENST00000172229
|
Expression for NGFR
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NGFR expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NGFR
1 / 2 / 3 3 probe-sets matching NGFR gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: GGCTTATGAG
SOURCE GeneReport for Unigene clusters: Hs.415768 Hs.681726
Expression variation in blood from EXPOLDB for NGFR |
Orthologs for NGFR
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NGFR gene from 5/8 species (see all 8
)
About this table Species with no ortholog for NGFR
ENSEMBL Gene Tree for NGFR | Paralogs for NGFR(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for NGFR gene
- TNFRSF11A2 LTBR2 CD402 TNFRSF42
|
SNPs/Variants for NGFR(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NGFR (up to first 250kb)
|
Disorders & Mutations for NGFR
(in which this Gene is Involved, According to
OMIM, UniProtKB,
Novoseek, PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 162010
10/95 Novoseek disease relationships for NGFR gene (see all 95
)
| Disease |
Score |
Articles |
PubMed IDs for Articles with Shared Sentences (# sentences) |
| alzheimers disease |
52.98 |
36 |
1464766 (3), 16816366 (2), 1436650 (2), 17349981 (2) (see all 24) |
| prurigo nodularis |
49.27 |
4 |
9609137 (2), 11875644 (1) |
| pheochromocytoma |
48.14 |
5 |
9681467 (1), 7763473 (1), 14673001 (1), 1964090 (1) |
| fibroma shope |
46.04 |
1 |
2160731 (1) |
| primitive neuroectodermal tumor pnet |
43.76 |
4 |
1648743 (1), 1649553 (1), 7526237 (1) |
| neurodegenerative diseases |
42.20 |
3 |
19128208 (1), 17385278 (1), 17107602 (1) |
| tumors |
41.86 |
158 |
11857376 (5), 15517907 (5), 11398197 (4), 17603629 (4) (see all 78) |
| peripheral nerve sheath tumors |
41.34 |
1 |
1656253 (1) |
| medulloblastoma |
40.83 |
23 |
8437665 (6), 19066726 (4), 16077909 (2), 12588433 (1) (see all 8) |
| necrosis |
37.63 |
38 |
12673888 (2), 1646845 (1), 9631659 (1), 10483869 (1) (see all 31) |
About this table
Human Gene Mutation Database: NGFR Genetic Association Database: NGFR Human Genome Epidemiology Navigator: NGFR (12 documents)
|
Medical News for NGFR(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NGFR (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/612 PubMed articles for NGFR gene (see all 612
):- Expression and structure of the human NGF receptor. (PubMed id 3022937)2, 3, 4 Johnson D.... Chao M. (1986)
- TRAF family proteins interact with the common neurotrophin receptor and modulate apoptosis induction. (PubMed id 10514511)1, 3, 4 Ye X....Bredesen D.E. (1999)
- Functional interaction of Fas-associated phosphatase-1 (FAP-1) with p75(NTR) and their effect on NF-kappaB activation. (PubMed id 10544233)1, 3, 4 Irie S.... Sato T.A. (1999)
- LINGO-1 is a component of the Nogo-66 receptor/p75 signaling complex. (PubMed id 14966521)3, 4 Mi S....Pepinsky R.B. (2004)
- The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)3, 4 Gerhard D.S....Malek J. (2004)
- A missense polymorphism (S205L) of the low-affinity neurotrophin receptor p75NTR gene is associated with depressive disorder and attempted suicide. (PubMed id 15274039)3, 6 Kunugi H....Kamijima K. (2004)
- RanBPM is a novel binding protein for p75NTR. (PubMed id 12963025)3, 4 Bai D.... Huang B.-R. (2003)
- The atypical protein kinase C-interacting protein p62 is a scaffold for NF-kappaB activation by nerve growth factor. (PubMed id 11244088)3, 4 Wooten M.W.... Moscat J. (2001)
- Association of the p75 neurotrophin receptor with TRAF6. (PubMed id 9915784)3, 4 Khursigara G.... Chao M.V. (1999)
- O-linked oligosaccharide on the 75-kDa neurotrophin receptor. (PubMed id 8627329)3, 4 Chapman B.S.... Lapointe G.R. (1996)
|
Search for NGFR
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NGFR
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NGFR
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NGFR(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NGFR(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NGFR:

 | |
 | | | | |
|
 |  |  |
| Antibodies & Assays for NGFR  (p75NTR) |
| | | | Tocris compounds for NGFR |
|
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Incremental update: 13 Oct 2009
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