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Aliases for NFYC-AS1 Gene

Subcategory (RNA class) for NFYC-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NFYC-AS1 Gene

  • NFYC Antisense RNA 1 2 3 5
  • 0808y08y 3

External Ids for NFYC-AS1 Gene

ORGUL Members for NFYC-AS1 Gene

Previous GeneCards Identifiers for NFYC-AS1 Gene

  • GC01M041155

Summaries for NFYC-AS1 Gene

GeneCards Summary for NFYC-AS1 Gene

NFYC-AS1 (NFYC Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFYC-AS1 Gene

Genomics for NFYC-AS1 Gene

Regulatory Elements for NFYC-AS1 Gene

Enhancers for NFYC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F040256 1.2 ENCODE 20.7 +434.6 434553 3.0 CREB3L1 ZFP64 FEZF1 DMAP1 YY1 SLC30A9 ZNF143 ZNF548 ZNF263 SP3 PPIEL EXO5 LOC105378672 LOC101929516 NFYC-AS1 ENSG00000259943 COL9A2 ENSG00000182109 SNORA55 PABPC4
GH01F040372 1.5 FANTOM5 ENCODE 11.4 +316.4 316409 5.9 HDGF PKNOX1 ARNT CREB3L1 WRNIP1 ARID4B SIN3A FEZF1 ZNF2 YY1 SMAP2 PPIEL LOC105378674 ENSG00000229528 ENSG00000213987 LOC101929516 EXO5 SNORA55 PABPC4 LOC105378672
GH01F039895 1.3 Ensembl ENCODE 12.5 +794.8 794776 5.0 HDGF ATF1 PKNOX1 MLX ARID4B YY1 ZNF143 FOS KLF13 ZNF263 TRIT1 PPIEL ENSG00000259943 NFYC-AS1 LOC105378672 MYCL LOC105378668
GH01F041379 1.2 Ensembl ENCODE 11.9 -689.7 -689656 4.6 PKNOX1 ZNF133 ZFP64 FEZF1 BRCA1 GLIS2 FOS ZNF263 SP3 REST FOXO6 NFYC-AS1 LOC105378672 EXO5 LOC101929901 LOC105378678
GH01F039865 0.8 FANTOM5 10 +826.5 826513 0.2 SMARCA5 CBX3 ZBTB2 ZNF140 ZNF366 ZSCAN16 CBX5 IKZF1 ZNF512 MLLT1 BMP8B ZMPSTE24 CAP1 TRIT1 PPIEL PPT1 EXO5 ENSG00000182109 NFYC-AS1 LOC105378672
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NFYC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000535122 261 2401 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC MEF2D ZNF610

Genomic Location for NFYC-AS1 Gene

Chromosome:
1
Start:
40,689,080 bp from pter
End:
40,692,261 bp from pter
Size:
3,182 bases
Orientation:
Minus strand

Genomic View for NFYC-AS1 Gene

Genes around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFYC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFYC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFYC-AS1 Gene

Proteins for NFYC-AS1 Gene

Post-translational modifications for NFYC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFYC-AS1 Gene

Domains & Families for NFYC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NFYC-AS1 Gene

Function for NFYC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFYC-AS1 Gene

Localization for NFYC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NFYC-AS1 Gene

Pathways & Interactions for NFYC-AS1 Gene

SuperPathways for NFYC-AS1 Gene

No Data Available

Interacting Proteins for NFYC-AS1 Gene

Gene Ontology (GO) - Biological Process for NFYC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NFYC-AS1 Gene

Transcripts for NFYC-AS1 Gene

mRNA/cDNA for NFYC-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NFYC-AS1 Gene

No ASD Table

Relevant External Links for NFYC-AS1 Gene

GeneLoc Exon Structure for
NFYC-AS1
ECgene alternative splicing isoforms for
NFYC-AS1

Expression for NFYC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NFYC-AS1 Gene

genes like me logo Genes that share expression patterns with NFYC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NFYC-AS1 Gene

Orthologs for NFYC-AS1 Gene

Evolution for NFYC-AS1 Gene

ENSEMBL:
Gene Tree for NFYC-AS1 (if available)
TreeFam:
Gene Tree for NFYC-AS1 (if available)

No data available for Orthologs for NFYC-AS1 Gene

Paralogs for NFYC-AS1 Gene

No data available for Paralogs for NFYC-AS1 Gene

Variants for NFYC-AS1 Gene

Sequence variations from dbSNP and Humsavar for NFYC-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10789187 -- 40,689,501(+) GGTCT(C/T)GAACT intron-variant, nc-transcript-variant
rs10789191 -- 40,690,819(+) GGTTA(C/G)CATCA intron-variant, nc-transcript-variant, upstream-variant-2KB
rs111365038 -- 40,691,549(+) CGAAA(-/G)GGGGC intron-variant, nc-transcript-variant, upstream-variant-2KB
rs11419988 -- 40,694,050(+) AACTT(-/G)GAAGA intron-variant, upstream-variant-2KB
rs114483507 -- 40,690,393(+) GCCTC(A/G)CACTG intron-variant, nc-transcript-variant, upstream-variant-2KB

Relevant External Links for NFYC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFYC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NFYC-AS1 Gene

Disorders for NFYC-AS1 Gene

Relevant External Links for NFYC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NFYC-AS1

No disorders were found for NFYC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NFYC-AS1 Gene

Publications for NFYC-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NFYC-AS1 Gene

Sources for NFYC-AS1 Gene

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