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Aliases for NFYC-AS1 Gene

Subcategory (RNA class) for NFYC-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NFYC-AS1 Gene

  • NFYC Antisense RNA 1 2 3 5
  • 0808y08y 3

External Ids for NFYC-AS1 Gene

ORGUL Members for NFYC-AS1 Gene

Previous GeneCards Identifiers for NFYC-AS1 Gene

  • GC01M041155

Summaries for NFYC-AS1 Gene

GeneCards Summary for NFYC-AS1 Gene

NFYC-AS1 (NFYC Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

Additional gene information for NFYC-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFYC-AS1 Gene

Genomics for NFYC-AS1 Gene

GeneHancer (GH) Regulatory Elements for NFYC-AS1 Gene

Promoters and enhancers for NFYC-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01I040690 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 571.1 -0.4 -440 4.4 ZFP64 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 SP3 NFYC MEF2D RIMS3 NFYC-AS1 NFYC ENSG00000259943 EXO5 TRIT1 LOC105378674 ZFP69 SLFNL1 MIR30C1
GH01I040256 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 30.9 +434.4 434448 3.2 ZFP64 FEZF1 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 ENSG00000259943 ZMPSTE24 PPIE PPIEL EXO5 TRIT1 RLF NFYC-AS1 NFYC LOC105378672
GH01I040372 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 21.7 +316.4 316408 5.9 HDGF PKNOX1 SMAD1 ARNT ARID4B SIN3A FEZF1 ZNF2 YY1 SLC30A9 SMAP2 PPIEL EXO5 PPIE TRIT1 ENSG00000259943 ENSG00000182109 NFYC-AS1 RLF NFYC
GH01I040708 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 14.9 -19.0 -18977 6.1 PKNOX1 SMAD1 FOXA2 ARNT ARID4B FEZF1 DMAP1 YY1 SLC30A9 POLR2B NFYC EXO5 RLF RIMS3 TRIT1 LOC105378674 NFYC-AS1 MIR30E MIR30C1 LOC105378672
GH01I039845 Enhancer 1.3 Ensembl ENCODE dbSUPER 21 +845.8 845842 2.7 PKNOX1 FOXA2 SMAD1 ZNF133 FEZF1 TCF12 ZNF121 FOS RUNX3 NFYC TRIT1 PPIEL NFYC-AS1 PPIE ENSG00000182109 EXO5 MYCL GC01P039840 ENSG00000202222 GC01M039882
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NFYC-AS1 Gene

Genomic Locations for NFYC-AS1 Gene
chr1:40,689,080-40,692,261
(GRCh38/hg38)
Size:
3,182 bases
Orientation:
Minus strand
chr1:41,154,752-41,157,933
(GRCh37/hg19)

Genomic View for NFYC-AS1 Gene

Genes around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFYC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFYC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFYC-AS1 Gene

Proteins for NFYC-AS1 Gene

Post-translational modifications for NFYC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFYC-AS1 Gene

Domains & Families for NFYC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NFYC-AS1 Gene

Function for NFYC-AS1 Gene

Phenotypes From GWAS Catalog for NFYC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFYC-AS1 Gene

Localization for NFYC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NFYC-AS1 Gene

Pathways & Interactions for NFYC-AS1 Gene

SuperPathways for NFYC-AS1 Gene

No Data Available

Interacting Proteins for NFYC-AS1 Gene

Gene Ontology (GO) - Biological Process for NFYC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NFYC-AS1 Gene

Drugs & Compounds for NFYC-AS1 Gene

No Compound Related Data Available

Transcripts for NFYC-AS1 Gene

mRNA/cDNA for NFYC-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NFYC-AS1 Gene

No ASD Table

Relevant External Links for NFYC-AS1 Gene

GeneLoc Exon Structure for
NFYC-AS1
ECgene alternative splicing isoforms for
NFYC-AS1

Expression for NFYC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NFYC-AS1 Gene

genes like me logo Genes that share expression patterns with NFYC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NFYC-AS1 Gene

Orthologs for NFYC-AS1 Gene

Evolution for NFYC-AS1 Gene

ENSEMBL:
Gene Tree for NFYC-AS1 (if available)
TreeFam:
Gene Tree for NFYC-AS1 (if available)

No data available for Orthologs for NFYC-AS1 Gene

Paralogs for NFYC-AS1 Gene

No data available for Paralogs for NFYC-AS1 Gene

Variants for NFYC-AS1 Gene

Sequence variations from dbSNP and Humsavar for NFYC-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1000215626 -- 40,692,598(-) A/T upstream_transcript_variant
rs1000275866 -- 40,693,406(-) G/A upstream_transcript_variant
rs1000474174 -- 40,689,053(-) T/C downstream_transcript_variant
rs1000567274 -- 40,693,209(-) G/A upstream_transcript_variant
rs1000820906 -- 40,693,921(-) T/C upstream_transcript_variant

Additional Variant Information for NFYC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFYC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NFYC-AS1 Gene

Disorders for NFYC-AS1 Gene

Additional Disease Information for NFYC-AS1

No disorders were found for NFYC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NFYC-AS1 Gene

Publications for NFYC-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A … Hentze MW (Cell 2012) 3 58
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for NFYC-AS1 Gene

Sources for NFYC-AS1 Gene

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