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Aliases for NFYC-AS1 Gene

Subcategory (RNA class) for NFYC-AS1 Gene

antisense

Quality Score for this RNA gene is

3

Aliases for NFYC-AS1 Gene

  • NFYC Antisense RNA 1 2 3 5
  • 0808y08y 3

External Ids for NFYC-AS1 Gene

ORGUL Members for NFYC-AS1 Gene

Previous GeneCards Identifiers for NFYC-AS1 Gene

  • GC01M041155

Summaries for NFYC-AS1 Gene

GeneCards Summary for NFYC-AS1 Gene

NFYC-AS1 (NFYC Antisense RNA 1) is an RNA Gene, and is affiliated with the antisense RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFYC-AS1 Gene

Genomics for NFYC-AS1 Gene

Regulatory Elements for NFYC-AS1 Gene

Enhancers for NFYC-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G040372 1.8 FANTOM5 ENCODE dbSUPER 21.7 +316.4 316409 5.9 CREB3L1 AGO1 FEZF1 YY1 SLC30A9 ZNF143 ZNF263 SP3 NFYC TBX21 SMAP2 PPIEL EXO5 ENSG00000259943 NFYC-AS1 ENSG00000182109 ZFP69 PABPC4 ENSG00000231296 ZMPSTE24
GH01G039845 1.5 Ensembl ENCODE dbSUPER 21 +845.8 845843 2.7 FOXA2 PKNOX1 ZNF133 SIN3A FEZF1 TCF12 ZNF121 ZNF143 FOS CAVIN1 TRIT1 PPIEL NFYC-AS1 ENSG00000182109 EXO5 MYCL GC01P039840 GC01M039882 ENSG00000202222
GH01G041492 2 FANTOM5 Ensembl ENCODE dbSUPER 11.7 -806.5 -806461 12.3 ARNT CREB3L1 AGO1 SIN3A ZNF2 ZNF548 FOS KLF13 SP3 JUNB EXO5 FOXJ3 EDN2 ENSG00000230881 LOC100418723 NFYC-AS1 RIMS3 LOC101929901 GC01M041492 GC01M041516
GH01G040690 1.4 ENCODE dbSUPER 12.8 -0.4 -441 4.4 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC TBX21 MEF2D RIMS3 ENSG00000259943 LOC105378674 ZFP69 NFYC-AS1 MIR30C1 MIR30E KCNQ4 GC01P040752
GH01G041380 1.5 Ensembl ENCODE dbSUPER 11.9 -690.0 -689974 4.0 PKNOX1 ZFP64 ZNF133 SIN3A FEZF1 BRCA1 GLIS2 FOS ZNF263 SP3 FOXO6 NFYC-AS1 LOC105378672 EXO5 LOC101929901 LOC105378678
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NFYC-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000005237 261 2001 CREB3L1 ZFP64 DMAP1 YY1 SLC30A9 ZNF263 SP3 NFYC MEF2D ZNF610

Genomic Location for NFYC-AS1 Gene

Chromosome:
1
Start:
40,689,080 bp from pter
End:
40,692,261 bp from pter
Size:
3,182 bases
Orientation:
Minus strand

Genomic View for NFYC-AS1 Gene

Genes around NFYC-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFYC-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFYC-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFYC-AS1 Gene

Proteins for NFYC-AS1 Gene

Post-translational modifications for NFYC-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFYC-AS1 Gene

Domains & Families for NFYC-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NFYC-AS1 Gene

Function for NFYC-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFYC-AS1 Gene

Localization for NFYC-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NFYC-AS1 Gene

Pathways & Interactions for NFYC-AS1 Gene

SuperPathways for NFYC-AS1 Gene

No Data Available

Interacting Proteins for NFYC-AS1 Gene

Gene Ontology (GO) - Biological Process for NFYC-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NFYC-AS1 Gene

Drugs & Compounds for NFYC-AS1 Gene

No Compound Related Data Available

Transcripts for NFYC-AS1 Gene

mRNA/cDNA for NFYC-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NFYC-AS1 Gene

No ASD Table

Relevant External Links for NFYC-AS1 Gene

GeneLoc Exon Structure for
NFYC-AS1
ECgene alternative splicing isoforms for
NFYC-AS1

Expression for NFYC-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NFYC-AS1 Gene

genes like me logo Genes that share expression patterns with NFYC-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NFYC-AS1 Gene

Orthologs for NFYC-AS1 Gene

Evolution for NFYC-AS1 Gene

ENSEMBL:
Gene Tree for NFYC-AS1 (if available)
TreeFam:
Gene Tree for NFYC-AS1 (if available)

No data available for Orthologs for NFYC-AS1 Gene

Paralogs for NFYC-AS1 Gene

No data available for Paralogs for NFYC-AS1 Gene

Variants for NFYC-AS1 Gene

Sequence variations from dbSNP and Humsavar for NFYC-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs1000215626 -- 40,692,598(+) GGGCT(A/T)GGGGC intron-variant, upstream-variant-2KB
rs1000275866 -- 40,693,406(+) AATTT(A/G)TTTTT intron-variant, upstream-variant-2KB
rs1000474174 -- 40,689,053(+) TATGC(C/T)GCAGT intron-variant, downstream-variant-500B
rs1000567274 -- 40,693,209(+) GAACA(A/G)GACTT intron-variant, upstream-variant-2KB
rs1000820906 -- 40,693,921(+) GAATA(C/T)GGGTT intron-variant, upstream-variant-2KB

Relevant External Links for NFYC-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFYC-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NFYC-AS1 Gene

Disorders for NFYC-AS1 Gene

Relevant External Links for NFYC-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NFYC-AS1

No disorders were found for NFYC-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NFYC-AS1 Gene

Publications for NFYC-AS1 Gene

  1. Insights into RNA biology from an atlas of mammalian mRNA-binding proteins. (PMID: 22658674) Castello A. … Hentze M.W. (Cell 2012) 3 64
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K. … Sugano S. (Genome Res. 2006) 3 64
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 64

Products for NFYC-AS1 Gene

Sources for NFYC-AS1 Gene

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