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Aliases for NFYC Gene

Aliases for NFYC Gene

  • Nuclear Transcription Factor Y, Gamma 2 3
  • Nuclear Transcription Factor Y Subunit C 3 4
  • CAAT Box DNA-Binding Protein Subunit C 3 4
  • Transactivator HSM-1/2 3 4
  • NF-YC 3 4
  • CBFC 3 6
  • CCAAT Transcription Binding Factor Subunit Gamma 3
  • Histone H1 Transcription Factor Large Subunit 2A 3
  • Nuclear Transcription Factor Y Subunit Gamma 3
  • Transcription Factor NF-Y, C Subunit 3
  • CCAAT Binding Factor Subunit C 3
  • Transactivator HSM-1 3
  • H1TF2A 3
  • CBF-C 3
  • HAP5 3
  • HSM 3

External Ids for NFYC Gene

Previous GeneCards Identifiers for NFYC Gene

  • GC01P041192
  • GC01P040160
  • GC01P040620
  • GC01P040570
  • GC01P040533
  • GC01P040826
  • GC01P040929
  • GC01P039275
  • GC01P041159

Summaries for NFYC Gene

Entrez Gene Summary for NFYC Gene

  • This gene encodes one subunit of a trimeric complex forming a highly conserved transcription factor that binds with high specificity to CCAAT motifs in the promoters of a variety of genes. The encoded protein, subunit C, forms a tight dimer with the B subunit, a prerequisite for subunit A association. The resulting trimer binds to DNA with high specificity and affinity. Subunits B and C each contain a histone-like motif. Multiple transcript variants encoding different isoforms have been found for this gene. [provided by RefSeq, Dec 2008]

GeneCards Summary for NFYC Gene

NFYC (Nuclear Transcription Factor Y, Gamma) is a Protein Coding gene. Among its related pathways are Metabolism and Metabolism. GO annotations related to this gene include sequence-specific DNA binding transcription factor activity and protein heterodimerization activity. An important paralog of this gene is POLE4.

UniProtKB/Swiss-Prot for NFYC Gene

  • Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5-CCAAT-3 box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors

Gene Wiki entry for NFYC Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFYC Gene

Genomics for NFYC Gene

Regulatory Elements for NFYC Gene

Genomic Location for NFYC Gene

Start:
40,691,570 bp from pter
End:
40,771,603 bp from pter
Size:
80,034 bases
Orientation:
Plus strand

Genomic View for NFYC Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NFYC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFYC Gene

Proteins for NFYC Gene

  • Protein details for NFYC Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q13952-NFYC_HUMAN
    Recommended name:
    Nuclear transcription factor Y subunit gamma
    Protein Accession:
    Q13952
    Secondary Accessions:
    • B4DUS6
    • B4DW63
    • D3DPV9
    • F8VWM3
    • Q59GY4
    • Q5T6K8
    • Q5T6K9
    • Q5T6L1
    • Q5TZR6
    • Q92869
    • Q9HBX1
    • Q9NXB5
    • Q9UM67
    • Q9UML0
    • Q9UMT7

    Protein attributes for NFYC Gene

    Size:
    458 amino acids
    Molecular mass:
    50302 Da
    Quaternary structure:
    • Heterotrimeric transcription factor composed of three components, NF-YA, NF-YB and NF-YC. NF-YB and NF-YC must interact and dimerize for NF-YA association and DNA binding.
    SequenceCaution:
    • Sequence=BAD92212.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NFYC Gene

    Alternative splice isoforms for NFYC Gene

neXtProt entry for NFYC Gene

Proteomics data for NFYC Gene at MOPED

Post-translational modifications for NFYC Gene

  • Ubiquitination at Lys36, Lys71, and Lys92
  • Modification sites at PhosphoSitePlus

No data available for DME Specific Peptides for NFYC Gene

Domains for NFYC Gene

Protein Domains for NFYC Gene

Graphical View of Domain Structure for InterPro Entry

Q13952

UniProtKB/Swiss-Prot:

NFYC_HUMAN :
  • Q13952
Family:
  • Belongs to the NFYC/HAP5 subunit family.
genes like me logo Genes that share domains with NFYC: view

No data available for Gene Families for NFYC Gene

Function for NFYC Gene

Molecular function for NFYC Gene

GENATLAS Biochemistry: nuclear transcription factor NF-Y,C subunit,binding the CCAAT and the inverted CCAT box,Y box (ATGG) motifs,in a variety of promoters,similarity with H2A
UniProtKB/Swiss-Prot Function: Component of the sequence-specific heterotrimeric transcription factor (NF-Y) which specifically recognizes a 5-CCAAT-3 box motif found in the promoters of its target genes. NF-Y can function as both an activator and a repressor, depending on its interacting cofactors

Gene Ontology (GO) - Molecular Function for NFYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003677 DNA binding IDA 15243141
GO:0003700 sequence-specific DNA binding transcription factor activity IEA --
GO:0003713 transcription coactivator activity TAS 10446203
GO:0005515 protein binding IPI 12401788
GO:0008134 transcription factor binding IEA --
genes like me logo Genes that share ontologies with NFYC: view

miRNA for NFYC Gene

miRTarBase miRNAs that target NFYC

Transcription Factor Targeting for NFYC Gene

Selected GeneGlobe predicted Target genes for NFYC

No data available for Enzyme Numbers (IUBMB) , Phenotypes , Animal Models and HOMER Transcription for NFYC Gene

Localization for NFYC Gene

Subcellular locations from UniProtKB/Swiss-Prot for NFYC Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NFYC Gene COMPARTMENTS Subcellular localization image for NFYC gene
Compartment Confidence
nucleus 5
cytosol 2
chloroplast 1
mitochondrion 1

Gene Ontology (GO) - Cellular Components for NFYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005622 intracellular --
GO:0005634 nucleus IDA 15243141
GO:0005654 nucleoplasm TAS --
GO:0016602 CCAAT-binding factor complex IDA 15243141
GO:0032993 protein-DNA complex IDA 11256944
genes like me logo Genes that share ontologies with NFYC: view

Pathways for NFYC Gene

genes like me logo Genes that share pathways with NFYC: view

Gene Ontology (GO) - Biological Process for NFYC Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006351 transcription, DNA-templated IEA --
GO:0006355 regulation of transcription, DNA-templated IDA 15243141
GO:0006357 regulation of transcription from RNA polymerase II promoter TAS 10446203
GO:0006457 protein folding TAS 10446203
GO:0044255 cellular lipid metabolic process --
genes like me logo Genes that share ontologies with NFYC: view

Transcripts for NFYC Gene

Unigene Clusters for NFYC Gene

Nuclear transcription factor Y, gamma:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NFYC Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10a · 10b ^ 11a · 11b · 11c ^ 12a · 12b · 12c ^ 13 ^ 14a · 14b · 14c ^ 15a · 15b ^ 16
SP1: - - - - - - - - -
SP2: - - - - - - - - - -
SP3: - - - - - - - - - -
SP4: - - - - - - - - - - - -
SP5: - - - - - -
SP6: -
SP7:
SP8:
SP9: -
SP10: - -

Relevant External Links for NFYC Gene

GeneLoc Exon Structure for
NFYC
ECgene alternative splicing isoforms for
NFYC

Expression for NFYC Gene

mRNA expression in normal human tissues for NFYC Gene

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, MOPED, and MaxQB for NFYC Gene

SOURCE GeneReport for Unigene cluster for NFYC Gene Hs.713051

genes like me logo Genes that share expressions with NFYC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NFYC Gene

Orthologs for NFYC Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NFYC Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NFYC 35
  • 99.7 (n)
  • 100 (a)
NFYC 36
  • 100 (a)
OneToOne
cow
(Bos Taurus)
Mammalia NFYC 35
  • 95.21 (n)
  • 99.4 (a)
NFYC 36
  • 99 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NFYC 35
  • 94.81 (n)
  • 99.1 (a)
NFYC 36
  • 99 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nfyc 35
  • 92.74 (n)
  • 99.4 (a)
Nfyc 16
Nfyc 36
  • 99 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NFYC 36
  • 96 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NFYC 36
  • 97 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nfyc 35
  • 91.94 (n)
  • 99.4 (a)
chicken
(Gallus gallus)
Aves NFYC 35
  • 84.73 (n)
  • 96.11 (a)
NFYC 36
  • 95 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia -- 36
  • 88 (a)
OneToMany
-- 36
  • 94 (a)
OneToMany
African clawed frog
(Xenopus laevis)
Amphibia Xl.6752 35
tropical clawed frog
(Silurana tropicalis)
Amphibia MGC75886 35
nfyc 35
  • 79.34 (n)
  • 90.72 (a)
zebrafish
(Danio rerio)
Actinopterygii nfyc 35
  • 77.98 (n)
  • 88.38 (a)
nfyc 36
  • 95 (a)
OneToOne
wufb98f01 35
fruit fly
(Drosophila melanogaster)
Insecta Nf-YC 36
  • 19 (a)
OneToOne
CG3075 37
  • 60 (a)
worm
(Caenorhabditis elegans)
Secernentea nfyc-1 36
  • 19 (a)
ManyToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes HAP5 36
  • 26 (a)
OneToMany
Alicante grape
(Vitis vinifera)
eudicotyledons Vvi.1103 35
soybean
(Glycine max)
eudicotyledons Gma.7826 35
barley
(Hordeum vulgare)
Liliopsida Hv.10173 35
corn
(Zea mays)
Liliopsida Zm.17510 35
rice
(Oryza sativa)
Liliopsida Os.24566 35
wheat
(Triticum aestivum)
Liliopsida Ta.7755 35
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.12254 35
Species with no ortholog for NFYC:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African malaria mosquito (Anopheles gambiae)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for NFYC Gene

ENSEMBL:
Gene Tree for NFYC (if available)
TreeFam:
Gene Tree for NFYC (if available)

Paralogs for NFYC Gene

Paralogs for NFYC Gene

Pseudogenes.org Pseudogenes for NFYC Gene

genes like me logo Genes that share paralogs with NFYC: view

Variants for NFYC Gene

Sequence variations from dbSNP and Humsavar for NFYC Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type MAF
rs1494 -- 40,706,176(-) TTTCC(A/G)CTGCA intron-variant
rs475268 -- 40,713,183(-) GGAAG(C/T)CCTAA intron-variant
rs489213 -- 40,700,811(-) CACTG(A/G)GTTCA intron-variant
rs532068 -- 40,695,579(-) GCTGG(A/G)TGTTG intron-variant
rs569159 -- 40,701,862(-) CTCCA(C/T)CGAGG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NFYC Gene

Variant ID Type Subtype PubMed ID
esv2663905 CNV Deletion 23128226
esv8923 CNV Gain 19470904
nsv610 CNV Insertion 18451855

Relevant External Links for NFYC Gene

HapMap Linkage Disequilibrium report
NFYC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NFYC Gene

Disorders for NFYC Gene

Relevant External Links for NFYC

Genetic Association Database (GAD)
NFYC
Human Genome Epidemiology (HuGE) Navigator
NFYC
genes like me logo Genes that share disorders with NFYC: view

No data available for UniProtKB/Swiss-Prot for NFYC Gene

Publications for NFYC Gene

  1. Cloning and expression of human NF-YC. (PMID: 9249075) Bellorini M. … Mantovani R. (Gene 1997) 2 3 4 23
  2. Isolation and sequence analysis of the cDNA encoding subunit C of human CCAAT-binding transcription factor. (PMID: 9332362) Dmitrenko V.V. … Kavsan V.M. (Gene 1997) 3 4 23
  3. Chromosomal assignment and tissue expression of CBF-C/NFY-C, the third subunit of the mammalian CCAAT-binding factor. (PMID: 8921405) Sinha S. … de Crombrugghe B. (Genomics 1996) 2 3 23
  4. CCAAT binding NF-Y-TBP interactions: NF-YB and NF-YC require short domains adjacent to their histone fold motifs for association with TBP basic residues. (PMID: 9153318) Bellorini M. … Mantovani R. (Nucleic Acids Res. 1997) 3 23
  5. p73 competes with co-activators and recruits histone deacetylase to NF-Y in the repression of PDGF beta-receptor. (PMID: 15454570) Uramoto H. … Funa K. (J. Cell. Sci. 2004) 3 23

Products for NFYC Gene

Sources for NFYC Gene

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