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Aliases & Descriptions for NFKBIE
(According to
1HGNC,
2Entrez Gene,
3UniProtKB/Swiss-Prot,
4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc
, and/or 7Ensembl,
8miRBase) About This Section
|
| Aliases |
|---|
| I-kappa-B-epsilon 3 | | IKBE 1, 2, 3 | | IkB-E 3 | | IkB-epsilon 3 | | IkappaBepsilon 3 | | NF-kappa-BIE 3 | | OTTHUMP00000016522 2 |
| | | Descriptions |
|---|
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon 2 |
|
| | Search outside databases for aliases for NFKBIE genePrevious GC identifers: GC06M044224 GC06M044273 |
Summaries for NFKBIE(According to Entrez Gene,
Wikipedia's
Gene Wiki,
UniProtKB/Swiss-Prot,
and/or
UniProtKB/TrEMBL)
About This Section
| EntrezGene summary for NFKBIE: NFKB1 (MIM 164011) or NFKB2 (MIM 164012) is bound to REL (MIM 164910), RELA (MIM 164014), or RELB (MIM 604758) to form the NFKB complex. The NFKB complex is inhibited by I-kappa-B proteins (NFKBIA, MIM 164008 or NFKBIB, MIM 604495), which inactivate NF-kappa-B by trapping it in the cytoplasm. Phosphorylation of serine residues on the I-kappa-B proteins by kinases (IKBKA, MIM 600664, or IKBKB, MIM 603258) marks them for destruction via the ubiquitination pathway, thereby allowing activation of the NF-kappa-B complex. Activated NFKB complex translocates into the nucleus and binds DNA at kappa-B-binding motifs such as 5-prime GGGRNNYYCC 3-prime or 5-prime HGGARNYYCC 3-prime (where H is A, C, or T; R is an A or G purine; and Y is a C or T pyrimidine). For some genes, activation requires NFKB interaction with other transcription factors, such as STAT (see STAT6, MIM 601512), AP1 (JUN, MIM 165160), and NFAT (see NFATC1, MIM 600489).[supplied by OMIM] UniProtKB/Swiss-Prot: IKBE_HUMAN, O00221Function: Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. Inhibits DNA-binding of NF-kappa-B p50-p65 and p50-c-Rel complexesGene Wiki entry for NFKBIE |
Genomic Location for NFKBIE
(According to
GeneLoc and/or
HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to
UCSC and
Ensembl,
Transcription factor binding sites according to
SABiosciences) About This Section
| Genomic View: UCSC Golden Path with GeneCards custom track
Transcription factor binding sites upstream to the NFKBIE gene 
Entrez Gene cytogenetic band: 6p21.1 Ensembl cytogenetic band: 6p21.1 HGNC cytogenetic band: 6p21.1NFKBIE Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different)
 GeneLoc gene densities for chromosome 6 GeneLoc Exon Structure GeneLoc location for GC06M044334:
(about GC identifiers)
Start:
|
44,333,881 bp from pter |
End:
|
44,341,503 bp from pter |
Size:
|
7,623 bases |
Orientation:
|
minus strand |
RefSeq DNA sequence:- NC_000006.10 NT_007592.14
| Proteins for NFKBIE
(According to
1UniProtKB,
and/or Ensembl,
Phosphorylation sites according to 2Phosphosite,
RefSeq according to NCBI,
PDB rendering according to OCA and/or Proteopedia,
Recombinant Proteins
from Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Enzo Life Sciences,
Abnova,
OriGene and/or,
Abcam,
Biochemical Assays by
Invitrogen,
Millipore,
R&D Systems,
Cell Signaling Technology, and/or
Enzo Life Sciences,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene,
Antibodies by Invitrogen,
Millipore,
Sigma-Aldrich,
R&D Systems,
Cell Signaling Technology,
Abcam,
Abnova, and/or
Novus Biologicals)
About This Section
| UniProtKB/Swiss-Prot: IKBE_HUMAN, O00221 (See
protein sequence)Recommended Name: NF-kappa-B inhibitor epsilon Size: 500 amino acids; 52864 Da
Subunit: Interacts with RELA, REL, NFKB1 nuclear factor NF-kappa-B p50 subunit and NFKB2 nuclear factor NF-kappa-B p52 subunit
Subcellular location: Cytoplasm (By similarity)
Sequence caution: Sequence=AAC51216.1; Type=Frameshift; Positions=339, 351;
Secondary accessions: Q5T9V9Post-translational modifications:
Serine phosphorylated; followed by proteasome-dependent degradation1
View phosphorylation sites using PhosphoSite2
REFSEQ proteins: NP_004547.2
ENSEMBL proteins: ENSP00000275015
Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 
1 Gene Ontology (GO) cellular component term (links to tree view): About this table
Antibodies for NFKBIE: Assays for NFKBIE: | Protein
Domains/ Families for NFKBIE(According to InterPro, ProtoNet,
UniProtKB, and/or BLOCKS,
Sets of similar genes according to GeneDecks)
About This Section
| - Graphical View of Domain Structure for InterPro Entry O00221
ProtoNet protein and cluster: O00221 UniProtKB/Swiss-Prot: IKBE_HUMAN, O00221Similarity: Belongs to the NF-kappa-B inhibitor familySimilarity: Contains 6 ANK repeats | Gene Function for NFKBIE
(According to MGI Jun 06 2009, UniProtKB,
IUBMB,and/or Genatlas,
shRNA from
OriGene,
Sigma-Aldrich, RNAi from
Sigma-Aldrich,
RNAi Products,
Clones, and
Q-PCR Products
from Invitrogen,
Millipore,
OriGene, and/or
Abnova,
siRNAs from
Applied Biosystems,
SYBR primers from OriGene,
Cell-based Assays from Millipore,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004556
Applied Biosystems Silencer® siRNAs for NFKBIE
Sigma-Aldrich siRNA for NFKBIE  Sigma-Aldrich shRNA for NFKBIE  Explore Sigma-Aldrich super-pooled esiRNAs 
              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004556                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004556                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004556 
Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_004556
UniProtKB/Swiss-Prot: IKBE_HUMAN, O00221Function: Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. Inhibits DNA-binding of NF-kappa-B p50-p65 and p50-c-Rel complexes4 MGI mutant phenotypes (inferred from 1 allele ) (MGI details for Nfkbie):
1 Gene Ontology (GO) molecular function term (links to tree view): About this table | Pathways & Interactions for NFKBIE
(Pathways according to Invitrogen
(maps by GeneGo),
Millipore,
Cell Signaling Technology,
Sigma-Aldrich,
KEGG
and/or UniProtKB,
Sets of similar genes according to GeneDecks,
Proteins Network according to
SABiosciences,
Interactions according to 1UniProtKB,
2MINT, and/or
3STRING,
with links to IntAct and
Ensembl,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene.)
About This Section
|
5/38 Sigma-Aldrich "Your Favorite Gene" Pathways for NFKBIE (Your Favorite Gene powered by Ingenuity) (see all 38
) 
Gene Network CentralTM Interacting Genes and Proteins Network for NFKBIE 
5/28 Interacting proteins for NFKBIE (ENSP000002750153 O002211, 2) via UniProtKB, MINT, and/or STRING (see all 28
)About this table
1 Gene Ontology (GO) biological process term (links to tree view): | GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|
| GO:0042994 | cytoplasmic sequestering of transcription factor |
TAS | 9135156 | About this table
|
Drugs & Compounds for NFKBIE(Chemical Compounds according to UniProtKB, Enzo Life Sciences,
Sigma-Aldrich, Tocris Bioscience, and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB)
About This Section
|  |
Enzo Life Sciences drugs & compounds for NFKBIE |
Compounds for NFKBIE available from Tocris Bioscience
|
Transcripts for NFKBIE(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank, RefSeq according to Entrez Gene,
DOTS (version 10), and/or
AceView,
non coding RNAs according to
RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc,
alternative splicing isoforms according to ASD and/or
ECgene,
RNAi Products from Invitrogen,
Millipore, and/or
Abnova,
siRNAs from Applied Biosystems,
Sigma-Aldrich,
shRNA from
Sigma-Aldrich,
OriGene,
Tagged/untagged cDNA clones from
OriGene, Expression Assays from Applied Biosystems) About This Section
|               OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004556
Sigma-Aldrich siRNA for NFKBIE  Sigma-Aldrich shRNA for NFKBIE  Explore Sigma-Aldrich super-pooled esiRNAs 
Applied Biosystems Silencer® siRNAs: NM_004556 REFSEQ mRNAs for NFKBIE gene: NM_004556.2
Applied Biosystems TaqMan ® Gene Expression Assays: NM_004556               OriGene GFP tagged cDNA clone in CMV expression vector: NM_004556                                  Myc/DDK tagged cDNA clone in CMV expression vector: NM_004556                                  untagged cDNA clones in CMV expression vector (see all 2): NM_004556  Additional cDNA sequence: AK301360.1 BC011676.2 BC063609.1 CR599256.1 CR611091.1 CR616372.1 CR625145.1 U91616.1 7 DOTS entries: DT.414540 DT.97861805 DT.100775152 DT.100775155 DT.100775245 DT.100775157 DT.91738521 24/521 AceView cDNA sequences (see all 521
):BU163977 AI073831 AA953975 Z42389 BM711990 CB113770 BU538684 AI281434 BU632152 BU552435 BU193320 BM798084 AB106538 BQ689189 CF529202 NM_178148 CR599256 BQ898825 BM451910 BM982998 BE514895 BE304877 BG763363 BE891334
highest scoring ESTs for NFKBIE:U91616 AA160822 AW732496 BC011676 BC063609 BE384483 BE896532 BE903071 BE910232 BF568202 Unigene Cluster for NFKBIE: Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, epsilon Hs.458276 [show with all ESTs]Unigene Representative Sequence: NM_004556
GeneLoc Exon Structure
3 Alternative Splicing Database (ASD) splice patterns (SP) for NFKBIE
| ExUns: | 1a | · | 1b | ^ | 2 | ^ | 3a | · | 3b | ^ | 4a | · | 4b | ^ | 5 | ^ | 6 | ^ | 7a | · | 7b | |
| SP1: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP2: | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |   | |
| SP3: | |   | |   | - |   | |   | |   | |   | |   | |   | |   | |   | |   |
About this scheme
ECgene alternative splicing isoforms for NFKBIE
1 Ensembl transcript including schematic representation: ENST00000275015
|
Expression for NFKBIE
(Experimental results according to
1GeneNote
and GNF BioGPS,
probe sets-to-genes annotations according to
2GeneAnnot ,
3GeneTide ,
Sets of similar genes according to GeneDecks,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP,
plus additional links to
SOURCE, and/or
GNF
BioGPS, and/or
EXPOLDB, and/or
UniProtKB,
Expression Assays from
Applied Biosystems
)
About This Section
| NFKBIE expression in normal and diseased human tissues
Applied Biosystems TaqMan ® Gene Expression Assays for NFKBIE
1 / 2 / 3 4 probe-sets matching NFKBIE gene Data from
(Publications) and GNF BioGPS About these images About these images
CGAP SAGE TAG: ACACTAAAAT
SOURCE GeneReport for Unigene cluster: Hs.458276
Expression variation in blood from EXPOLDB for NFKBIE UniProtKB/Swiss-Prot: IKBE_HUMAN, O00221Tissue specificity: Highly expressed in spleen, testis and lung, followed by kidney, pancreas, heart, placenta and brain. Also expressed in granulocytes and macrophages |
Orthologs for NFKBIE
(Orthologs according to
1,2HomoloGene (2older version, for species not in 1newer version),
3euGenes,
4SGD
and/or
5MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase,
Gene Trees according to Ensembl)
About This Section
|
Orthologs for NFKBIE gene from 5/9 species (see all 9
)
About this table Species with no ortholog for NFKBIE
ENSEMBL Gene Tree for NFKBIE | Paralogs for NFKBIE(Paralogs according to 1HomoloGene and 2Ensembl, Pseudogenes according to 3Pseudogene.org) About This Section
| Paralogs for NFKBIE gene
- NFKBIB2 NFKBIA2
|
SNPs/Variants for NFKBIE(According to the
1NCBI SNP Database,
2Ensembl,
3PupaSUITE, and
UniProtKB,
Linkage Disequilibrium by HapMap,
Genotyping Reagents from
Applied Biosystems)
About This Section
|
HapMap Linkage Disequilibrium images for NFKBIE (up to first 250kb)
|
Disorders & Mutations for NFKBIE
(in which this Gene is Involved, According to
OMIM, UniProtKB,
PharmGKB,
Genatlas, GeneTests,
Blood group antigen gene mutations by BGMUT,
HGMD, GAD,
HuGE Navigator,
BCGD,
and/or TGDB.)
About This Section
|
OMIM: 604548
Human Genome Epidemiology Navigator: NFKBIE (4 documents)
|
Medical News for NFKBIE(Possibly Related Articles in
Doctor's Guide)
About This Section
| -- |
Publications for NFKBIE (in
PubMed.
Associations of this gene to articles via
1Novoseek,
2HGNC,
3Entrez Gene,
4UniProtKB/Swiss-Prot,
5UniProtKB/TrEMBL,
6GAD, and/or
7PharmGKB)
About This Section
| 10/25 PubMed articles for NFKBIE gene (see all 25
):- IkappaB epsilon, a novel member of the IkappaB family, controls RelA and cRel NF-kappaB activity. (PubMed id 9135156)2, 3, 4 Whiteside S.T.... Israel A. (1997)
- A new member of the IkappaB protein family, IkappaB epsilon, inhibits RelA (p65)-mediated NF-kappaB transcription. (PubMed id 9315679)3, 4 Li Z. and Nabel G.J. (1997)
- IkappaB genetic polymorphisms and invasive pneumococcal disease. (PubMed id 17463416)1, 3 Chapman S.J....Hill A.V. (2007)
- Inactivating I kappa B epsilon mutations in Hodgkin/Reed-Sternberg cells. (PubMed id 14595753)1, 3 Emmerich F....Dorken B. (2003)
- Genetic variation in the NF{kappa}B pathway in relation to susceptibility to rheumatoid arthritis. (PubMed id 18434448)1, 3 Dieguez-Gonzalez R....Gonzalez A. (2008)
- Gene expression levels in normal human lymphoblasts with variable sensitivities to arsenite: identification of GGT1 and NFKBIE expression levels as possible biomarkers of susceptibility. (PubMed id 17976673)3 Komissarova E.V....Rossman T.G. (2008)
- Preterm birth in Caucasians is associated with coagulation and inflammation pathway gene variants. (PubMed id 18818748)3 Velez D.R....Menon R. (2008)
- Pathway-based evaluation of 380 candidate genes and lung cancer susceptibility suggests the importance of the cell cycle pathway. (PubMed id 18676680)3 Hosgood H.D....Lan Q. (2008)
- Spontaneous preterm birth in African Americans is associated with infection and inflammatory response gene variants. (PubMed id 19019335)3 Velez D.R....Menon R. (2008)
- Protein phosphatase 6 subunit with conserved Sit4-associated protein domain targets IkappaBepsilon. (PubMed id 16769727)3 Stefansson B. and Brautigan D.L. (2006)
|
Search for NFKBIE
(in PubMed,
OMIM, and NCBI Bookshelf) About This Section
|
|
Genome Databases showing NFKBIE
(According to
Entrez Gene,
HGNC,
AceView,
euGenes,
Ensembl,
miRBase,
ECgene,
and/or
H-InvDB)
About This Section
|
| Other Databases showing NFKBIE
(According to HUGE)
About This Section
| -- |
Specialized Databases showing NFKBIE(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL, Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot) About This Section
|
| About This Section
| --
| Services for NFKBIE(Reagents available from Applied Biosystems, Antibodies and assays by Cell
Signaling Technology, Abcam, Novus Biologicals, Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich, Enzo Life Sciences, and/or Tocris Bioscience) About This Section
| 
 Products for NFKBIE:

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Incremental update: 13 Oct 2009
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