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Aliases & Descriptions for NFKBIB
(According to
1 HGNC ,
2 Entrez Gene ,
3 UniProtKB/Swiss-Prot ,
4 UniProtKB/TrEMBL , 5 OMIM , 6 GeneLoc
, and/or 7 Ensembl ,
8 miRBase )About This Section
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Aliases I-kappa-B-beta 3 IKB B 1 , 2 , 3 , 5 IkB -B 3 IkB -beta 3 IkappaBbeta 3 NF-kappa-BIB 3 TRIP-9 3 TRIP9 1 , 2 , 3 , 5
Descriptions TR-interacting protein 9 3 Thyroid receptor-interacting protein 9 3 nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta 2
Search outside databases for aliases for NFKBIB genePrevious GC identifers: GC19P040002 GC19P039781 GC19P044066
Summaries for NFKBIB (According to Entrez Gene ,
Wikipedia's
Gene Wiki ,
UniProtKB/Swiss-Prot ,
and/or
UniProtKB/TrEMBL )
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EntrezGene summary for NFKBIB : NFKB1 (MIM 164011) or NFKB2 (MIM 164012) is bound to REL (MIM 164910), RELA (MIM 164014), or RELB(MIM 604758) to form the NFKB complex. The NFKB complex is inhibited by I-kappa-B proteins(NFKBIA, MIM 164008, or NFKBIB), which inactivate NF-kappa-B by trapping it in the cytoplasm.Phosphorylation of serine residues on the I-kappa-B proteins by kinases (IKB KA, MIM 600664 orIKB KB, MIM 603258) marks them for destruction via the ubiquitination pathway, thereby allowingactivation of the NF-kappa-B complex. Activated NFKB complex translocates into the nucleus andbinds DNA at kappa-B-binding motifs such as 5-prime GGGRNNYYCC 3-prime or 5-prime HGGARNYYCC3-prime (where H is A, C, or T; R is an A or G purine; and Y is a C or T pyrimidine).[supplied byOMIM] UniProtKB/Swiss-Prot: IKBB_HUMAN, Q15653 Function : Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. However, theunphosphorylated form resynthesized after cell stimulation is able to bind NF-kappa-B allowing itstransport to the nucleus and protecting it to further IKB A-dependent inactivation. Associationwith inhibitor kappa B-interacting NKIRAS1 and NKIRAS2 prevent its phosphorylation rendering itmore resistant to degradation, explaining its slower degradation
Gene Wiki entry for NFKBIB
Genomic Location for NFKBIB
(According to
GeneLoc and/or
HGNC , and/or
Entrez Gene (NCBI build 36) ,
and/or miRBase ,
Genomic Views according to
UCSC and
Ensembl ,
Transcription factor binding sites according to
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Genomic View : UCSC Golden Path with GeneCards custom track Transcription factor binding sites upstream to the NFKBIB gene Entrez Gene cytogenetic band: 19q13.1 Ensembl cytogenetic band: 19q13.2 HGNC cytogenetic band: 19q13.1 NFKBIB Gene in genomic location: bands according to Ensembl, locations according to
(and/or Entrez Gene and/or Ensembl if different) GeneLoc gene densities for chromosome 19 GeneLoc Exon Structure
GeneLoc location for GC19P044082:
(about GC identifiers )
Start:
44,082,444 bp from pter
End:
44,091,374 bp from pter
Size:
8,931 bases
Orientation:
plus strand
RefSeq DNA sequence: NC_000019.8 NT_011109.15 Proteins for NFKBIB
(According to
1 UniProtKB ,
and/or Ensembl ,
Phosphorylation sites according to 2 Phosphosite ,
RefSeq according to NCBI ,
PDB rendering according to OCA and/or Proteopedia ,
Recombinant Proteins
from Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Enzo Life Sciences ,
Abnova ,
OriGene and/or,
Abcam ,
Biochemical Assays by
Invitrogen ,
Millipore ,
R&D Systems ,
Cell Signaling Technology , and/or
Enzo Life Sciences ,
Ontologies according to Gene
Ontology Consortium 01 Apr 2009 and
Entrez Gene ,
Antibodies by Invitrogen ,
Millipore ,
Sigma-Aldrich ,
R&D Systems ,
Cell Signaling Technology ,
Abcam ,
Abnova , and/or
Novus Biologicals )
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UniProtKB/Swiss-Prot: IKBB_HUMAN, Q15653 (See
protein sequence )Recommended Name: NF-kappa-B inhibitor beta Size : 356 amino acids; 37771 Da
Subunit : Interacts with THRB (via ligand-binding domain). Interacts with RELA and REL. Interactswith COMMD1 and inhibitor kappa B-interacting Ras-like NKIRAS1 and NKIRAS2
Subcellular location : Cytoplasm (By similarity). Nucleus (By similarity)
Secondary accessions : Q96BJ7Alternative splicing : 2 isoforms : Q15653-1 Q15653-2
Post-translational modifications:
Phosphorylated; followed by degradation. Interaction with NKIRAS1 and NKIRAS2 probably preventsphosphorylation1
View phosphorylation sites using PhosphoSite 2
REFSEQ proteins (2 alternative transcripts):
NP_001001716.1 NP_002494.2 ENSEMBL proteins: ENSP00000386202 ENSP00000312988 ENSP00000375929 Human Recombinant Proteins Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 3 Gene Ontology (GO) cellular component terms (links to tree view) :
About this table Antibodies for NFKBIB: Assays for NFKBIB:
Protein
Domains/ Families for NFKBIB(According to InterPro , ProtoNet ,
UniProtKB , and/or BLOCKS ,
Sets of similar genes according to GeneDecks )
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Graphical View of Domain Structure for InterPro Entry Q15653 ProtoNet protein and cluster: Q15653
1 Blocks protein family : IPB002110 Ankyrin repeat signature UniProtKB/Swiss-Prot: IKBB_HUMAN, Q15653 Similarity : Belongs to the NF-kappa-B inhibitor familySimilarity : Contains 6 ANK repeats
Gene Function for NFKBIB
(According to MGI Jun 06 2009, UniProtKB ,
IUBMB ,and/or Genatlas ,
shRNA from
OriGene ,
Sigma-Aldrich , RNAi from
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RNAi Products ,
Clones , and
Q-PCR Products
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Millipore ,
OriGene , and/or
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SYBR primers from OriGene ,
Cell-based Assays from Millipore ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002503 Applied Biosystems Silencer ® siRNAs for NFKBIB Sigma-Aldrich siRNA and siRNA Panels for NFKBIB Sigma-Aldrich shRNA Panels and shRNA for NFKBIB Explore Sigma-Aldrich super-pooled esiRNAs                OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001716                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001716                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001001716  Primers: Browse
Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers               OriGene genome-wide validated SYBR primer pairs: NM_002503 UniProtKB/Swiss-Prot: IKBB_HUMAN, Q15653 Function : Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. However, theunphosphorylated form resynthesized after cell stimulation is able to bind NF-kappa-B allowing itstransport to the nucleus and protecting it to further IKB A-dependent inactivation. Associationwith inhibitor kappa B-interacting NKIRAS1 and NKIRAS2 prevent its phosphorylation rendering itmore resistant to degradation, explaining its slower degradation
Genatlas biochemistry entry for NFKBIB :nuclear transcription factor of kappa light chain gene enhancer in B cells (NF-kappa B) inhibitorar beta,sequestering it in the cytcytoplasm,also inhibiting NF-kappa B DNA binding
1 MGI mutant phenotype (inferred from 1 allele ) (MGI details for Nfkbib) :3 Gene Ontology (GO) molecular function terms (links to tree view) :
About this table
Pathways & Interactions for NFKBIB
(Pathways according to Invitrogen
(maps by GeneGo ),
Millipore ,
Cell Signaling Technology ,
Sigma-Aldrich ,
KEGG
and/or UniProtKB ,
Sets of similar genes according to GeneDecks ,
Proteins Network according to
SABiosciences ,
Interactions according to 1 UniProtKB ,
2 MINT , and/or
3 STRING ,
with links to IntAct and
Ensembl ,
Ontologies according to Gene Ontology Consortium 01 Apr 2009 via
Entrez Gene .)
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5/40 Sigma-Aldrich "Your Favorite Gene" Pathways for NFKBIB (Your Favorite Gene powered by Ingenuity) (see all 40
) 5/78 Interacting proteins for NFKBIB (Q15653 1 , 2 ENSP00000312988 3 ) via UniProtKB, MINT, and/or STRING (see all 78
)About this table 2 Gene Ontology (GO) biological process terms (links to tree view) :
About this table
Drugs & Compounds for NFKBIB (Chemical Compounds according to UniProtKB , Enzo Life Sciences ,
Sigma-Aldrich , Tocris Bioscience , and/or
Novoseek and Drugs according to
Enzo Life Sciences and/or
PharmGKB )
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Enzo Life Sciences drugs & compounds for NFKBIB
Compounds for NFKBIB available from Tocris Bioscience 1 Novoseek chemical compound relationship for NFKBIB gene
Compound
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
potassium
0.00
2
11181838 (2)
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Transcripts for NFKBIB(GenBank/EMBL/DDBJ Accessions according to
Unigene
(Build 219 Homo sapiens; Jun 2 2009) or GenBank , RefSeq according to Entrez Gene ,
DOTS (version 10), and/or
AceView ,
non coding RNAs according to
RNAdb ,
ESTs according to GeneTide ,
exon structure from GeneLoc ,
alternative splicing isoforms according to ASD and/or
ECgene ,
RNAi Products from Invitrogen ,
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siRNAs from Applied Biosystems ,
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               OriGene 29mer shRNA kit in GFP-retroviral vectors (see all 2 ): NM_002503 Sigma-Aldrich siRNA and siRNA Panels for NFKBIB Sigma-Aldrich shRNA Panels and shRNA for NFKBIB Explore Sigma-Aldrich super-pooled esiRNAs
Applied Biosystems Silencer ® siRNAs: NM_001001716 NM_002503
REFSEQ mRNAs for NFKBIB gene (2 alternative transcripts): NM_001001716.1 NM_002503.3
Applied Biosystems TaqMan ® Gene Expression Assays: NM_001001716 NM_002503
               OriGene GFP tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001716                                  Myc/DDK tagged cDNA clones in CMV expression vector (see all 2 ): NM_001001716                                  untagged cDNA clones in CMV expression vector (see all 3 ): NM_001001716  
Additional cDNA sequence: AB209784.1 AB362577.1 AK057862.1 AK290569.1 BC007197.1 BC015528.1 BT006743.1 CR592567.1 CR604980.1 CR618976.1
14 DOTS entries : DT.86855439 DT.313679 DT.100781872 DT.100777872 DT.91749442 DT.100777874 DT.121500124 DT.121500107 DT.121500144 DT.429673 DT.100029792 DT.100781874 DT.100059970 DT.75110752
24/176 AceView cDNA sequences (see all 176
):CD366995 BM845555 CD672788 BM449613 BQ879409 BQ720355 CR618976 BC015528 BM560199 CR592567 BQ688190 AI191991 BU634404 R09289 CR604980 NM_002503 BQ896967 BM853672 BF448908 BM559687 BU855728 BU726634 BM761120 AA044256
highest scoring ESTs for NFKBIB :AA044140 AA261798 AA725591 AA769470 AA806371 AA825675 AA833886 AA847877 AA928200 AA953154
Unigene Cluster for NFKBIB: Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta Hs.9731 [show with all ESTs ] Unigene Representative Sequence: NM_001001716 GeneLoc Exon Structure 4 Alternative Splicing Database (ASD) splice patterns (SP) for NFKBIB ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7 SP1 :                           SP2 :   -   -   -                     SP3 :       -   -                   SP4 :         -                  
About this scheme ECgene alternative splicing isoforms for NFKBIB 3 Ensembl transcripts including schematic representations : ENST00000408917
ENST00000313582
ENST00000392079
Expression for NFKBIB
(Experimental results according to
1 GeneNote
and GNF BioGPS ,
probe sets-to-genes annotations according to
2 GeneAnnot ,
3 GeneTide ,
Sets of similar genes according to GeneDecks ,
Electronic Northern calculations according to data from
UniGene (Build 219 Homo sapiens),
SAGE tags according to
CGAP ,
plus additional links to
SOURCE , and/or
GNF
BioGPS , and/or
EXPOLDB , and/or
UniProtKB ,
Expression Assays from
Applied Biosystems
)
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NFKBIB expression in normal and diseased human tissues Applied Biosystems TaqMan ® Gene Expression Assays for NFKBIB 1 / 2 / 3
8 probe-sets matching NFKBIB gene Data from
(Publications) and GNF BioGPS About these images About these images CGAP SAGE TAG: GGTGGTGGGCSOURCE GeneReport for Unigene cluster: Hs.9731 Expression variation in blood from EXPOLDB for NFKBIB
UniProtKB/Swiss-Prot: IKBB_HUMAN, Q15653 Tissue specificity : Expressed in all tissues examined
Orthologs for NFKBIB
(Orthologs according to
1,2 HomoloGene (2 older version, for species not in 1 newer version),
3 euGenes ,
4 SGD
and/or
5 MGI Jun 06 2009,
with possible further links to
Flybase
and/or
WormBase ,
Gene Trees according to Ensembl )
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Orthologs for NFKBIB gene from 5 species
About this table Species with no ortholog for NFKBIB ENSEMBL Gene Tree for NFKBIB Paralogs for NFKBIB (Paralogs according to 1 HomoloGene and 2 Ensembl , Pseudogenes according to 3 Pseudogene.org )About This Section
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Paralogs for NFKBIB gene NFKBIA 2 NFKBIE 2
SNPs/Variants for NFKBIB (According to the
1 NCBI SNP Database ,
2 Ensembl ,
3 PupaSUITE , and
UniProtKB ,
Linkage Disequilibrium by HapMap ,
Genotyping Reagents from
Applied Biosystems )
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HapMap Linkage Disequilibrium images for NFKBIB (up to first 250kb)
Disorders & Mutations for NFKBIB
(in which this Gene is Involved, According to
OMIM, UniProtKB ,
Novoseek , PharmGKB ,
Genatlas , GeneTests ,
Blood group antigen gene mutations by BGMUT ,
HGMD, GAD ,
HuGE Navigator ,
BCGD ,
and/or TGDB .)
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OMIM: 604495 1 Novoseek disease relationship for NFKBIB gene
Disease
Score
Articles
PubMed IDs for Articles with Shared Sentences (# sentences)
necrosis
32.64
1
16792530 (1)
About this table Human Genome Epidemiology Navigator: NFKBIB (3 documents)
Medical News for NFKBIB (Possibly Related Articles in
Doctor's Guide )
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--
Publications for NFKBIB (in
PubMed .
Associations of this gene to articles via
1 Novoseek ,
2 HGNC ,
3 Entrez Gene ,
4 UniProtKB/Swiss-Prot ,
5 UniProtKB/TrEMBL ,
6 GAD , and/or
7 PharmGKB )
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10/91 PubMed articles for NFKBIB gene (see all 91
): Inhibition of NF-kappaB activity by IkappaBbeta in association with kappaB-Ras. (PubMed id 15024091) 1, 3, 4 Chen Y.... Ghosh G. (2004) KappaB-Ras binds to the unique insert within the ankyrin repeat domain of IkappaBbeta and regulates cytoplasmic retention of IkappaBbeta.NF-kappaB complexes. (PubMed id 12672800) 1, 3, 4 Chen Y.... Ghosh G. (2003) A subclass of Ras proteins that regulate the degradation of IkappaB. (PubMed id 10657303) 1, 3, 4 Fenwick C....Ghosh S. (2000) Assignment of the IkappaB-beta gene NFKBIB to human chromosome band 19q13.1 by in situ hybridization. (PubMed id 9763672) 1, 2, 3 Okamoto T....Sonta S. (1998) The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334) 3, 4 Gerhard D.S....Malek J. (2004) Role of unphosphorylated, newly synthesized IkappaB beta in persistent activation of NF-kappaB. (PubMed id 8816457) 3, 4 Suyang H.... Ghosh S. (1996) Mapping of the inducible IkappaB phosphorylation sites that signal its ubiquitination and degradation. (PubMed id 8657102) 3, 4 DiDonato J.A....Karin M. (1996) Two classes of proteins dependent on either the presence or absence of thyroid hormone for interaction with the thyroid hormone receptor. (PubMed id 7776974) 3, 4 Lee J.W....Moore D.D. (1995) Regulation of IkappaBbeta expression in testis. (PubMed id 12475944) 1, 3 Budde L.M....Ghosh S. (2002) Effect of weight loss on proinflammatory state of mononuclear cells in obese women. (PubMed id 18356846) 1, 3 Sheu W.H....Lee I.T. (2008)
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Genome Databases showing NFKBIB
(According to
Entrez Gene ,
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AceView ,
euGenes ,
Ensembl ,
miRBase ,
ECgene ,
and/or
H-InvDB )
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Other Databases showing NFKBIB
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Specialized Databases showing NFKBIB (According to ATLAS , HORDE , IMGT , MTDB, LEIDEN , UniProtKB/Swiss-Prot , and/or UniProtKB/TrEMBL ,Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot )About This Section
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-- Services for NFKBIB (Reagents available from Applied Biosystems , Antibodies and assays by Cell
Signaling Technology , Abcam , Novus Biologicals ,Sigma-Aldrich , R&D Systems , Millipore , Abnova , and/or Invitrogen , Clones available from OriGene ,and/or Invitrogen , Drugs and/or compounds by Sigma-Aldrich , Enzo Life Sciences , and/or Tocris Bioscience )About This Section
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Products for NFKBIB:
Antibodies & Assays for NFKBIB   (IkBb)
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