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Aliases for NFKBIB Gene

Aliases for NFKBIB Gene

  • Nuclear Factor Of Kappa Light Polypeptide Gene Enhancer In B-Cells Inhibitor, Beta 2 3
  • TRIP9 3 4 6
  • IKBB 3 4 6
  • Thyroid Receptor-Interacting Protein 9 3 4
  • TR-Interacting Protein 9 3 4
  • I-Kappa-B-Beta 3 4
  • NF-Kappa-BIB 3 4
  • IkappaBbeta 3 4
  • IkB-Beta 3 4
  • TRIP-9 3 4
  • IkB-B 3 4
  • NF-Kappa-B Inhibitor Beta 3

External Ids for NFKBIB Gene

Previous GeneCards Identifiers for NFKBIB Gene

  • GC19P040002
  • GC19P039781
  • GC19P044066
  • GC19P044082
  • GC19P039390
  • GC19P035837

Summaries for NFKBIB Gene

Entrez Gene Summary for NFKBIB Gene

  • The protein encoded by this gene belongs to the NF-kappa-B inhibitor family, which inhibit NF-kappa-B by complexing with, and trapping it in the cytoplasm. Phosphorylation of serine residues on these proteins by kinases marks them for destruction via the ubiquitination pathway, thereby allowing activation of the NF-kappa-B, which translocates to the nucleus to function as a transcription factor. Alternatively spliced transcript variants have been found for this gene.[provided by RefSeq, Jul 2011]

GeneCards Summary for NFKBIB Gene

NFKBIB (Nuclear Factor Of Kappa Light Polypeptide Gene Enhancer In B-Cells Inhibitor, Beta) is a Protein Coding gene. Among its related pathways are Downstream Signaling Events Of B Cell Receptor (BCR) and Downstream Signaling Events Of B Cell Receptor (BCR). GO annotations related to this gene include signal transducer activity and transcription coactivator activity. An important paralog of this gene is BCL3.

UniProtKB/Swiss-Prot for NFKBIB Gene

  • Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. However, the unphosphorylated form resynthesized after cell stimulation is able to bind NF-kappa-B allowing its transport to the nucleus and protecting it to further NFKBIA-dependent inactivation. Association with inhibitor kappa B-interacting NKIRAS1 and NKIRAS2 prevent its phosphorylation rendering it more resistant to degradation, explaining its slower degradation

Gene Wiki entry for NFKBIB Gene

No data available for Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFKBIB Gene

Genomics for NFKBIB Gene

Regulatory Elements for NFKBIB Gene

Epigenetics Products

  • DNA Methylation CpG Assay Predesigned for Pyrosequencing in human,mouse,rat

Genomic Location for NFKBIB Gene

Start:
38,899,507 bp from pter
End:
38,908,894 bp from pter
Size:
9,388 bases
Orientation:
Plus strand

Genomic View for NFKBIB Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NFKBIB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFKBIB Gene

Proteins for NFKBIB Gene

  • Protein details for NFKBIB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q15653-IKBB_HUMAN
    Recommended name:
    NF-kappa-B inhibitor beta
    Protein Accession:
    Q15653
    Secondary Accessions:
    • A8K3F4
    • Q96BJ7

    Protein attributes for NFKBIB Gene

    Size:
    356 amino acids
    Molecular mass:
    37771 Da
    Quaternary structure:
    • Interacts with THRB (via ligand-binding domain) (PubMed:7776974). Interacts with RELA and REL (By similarity). Interacts with COMMD1 (PubMed:16573520). Interacts with inhibitor kappa B-interacting Ras-like NKIRAS1 and NKIRAS2 (PubMed:10657303, PubMed:12672800, PubMed:15024091). Interacts with DDRGK1; positively regulates NFKBIB phosphorylation and degradation (PubMed:23675531).

    Alternative splice isoforms for NFKBIB Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NFKBIB Gene

Proteomics data for NFKBIB Gene at MOPED

Post-translational modifications for NFKBIB Gene

  • Phosphorylated by RPS6KA1; followed by degradation. Interaction with NKIRAS1 and NKIRAS2 probably prevents phosphorylation.
  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NFKBIB Gene

Antibody Products

  • Cell Signaling Technology (CST) Antibodies for NFKBIB (IkB-beta)

No data available for DME Specific Peptides for NFKBIB Gene

Domains for NFKBIB Gene

Gene Families for NFKBIB Gene

HGNC:
  • ANKRD :Ankyrin repeat domain containing

Protein Domains for NFKBIB Gene

Suggested Antigen Peptide Sequences for NFKBIB Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q15653

UniProtKB/Swiss-Prot:

IKBB_HUMAN :
  • Q15653
Family:
  • Belongs to the NF-kappa-B inhibitor family.
Similarity:
  • Contains 6 ANK repeats.
genes like me logo Genes that share domains with NFKBIB: view

Function for NFKBIB Gene

Molecular function for NFKBIB Gene

GENATLAS Biochemistry:
nuclear transcription factor of kappa light chain gene enhancer in B cells (NF-kappa B) inhibitor ar beta,sequestering it in the cytcytoplasm,also inhibiting NF-kappa B DNA binding
UniProtKB/Swiss-Prot Function:
Inhibits NF-kappa-B by complexing with and trapping it in the cytoplasm. However, the unphosphorylated form resynthesized after cell stimulation is able to bind NF-kappa-B allowing its transport to the nucleus and protecting it to further NFKBIA-dependent inactivation. Association with inhibitor kappa B-interacting NKIRAS1 and NKIRAS2 prevent its phosphorylation rendering it more resistant to degradation, explaining its slower degradation

Gene Ontology (GO) - Molecular Function for NFKBIB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0003713 transcription coactivator activity TAS 7776974
GO:0004871 signal transducer activity TAS 7776974
GO:0005515 protein binding IPI 10498867
genes like me logo Genes that share ontologies with NFKBIB: view
genes like me logo Genes that share phenotypes with NFKBIB: view

Animal Models for NFKBIB Gene

MGI Knock Outs for NFKBIB:

Animal Model Products

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NFKBIB

In Situ Assay Products

Flow Cytometry Products

No data available for Enzyme Numbers (IUBMB) , miRNA , Transcription Factor Targeting and HOMER Transcription for NFKBIB Gene

Localization for NFKBIB Gene

Subcellular locations from UniProtKB/Swiss-Prot for NFKBIB Gene

Cytoplasm. Nucleus.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NFKBIB Gene COMPARTMENTS Subcellular localization image for NFKBIB gene
Compartment Confidence
cytosol 4
nucleus 3

Gene Ontology (GO) - Cellular Components for NFKBIB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IEA --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with NFKBIB: view

Pathways for NFKBIB Gene

SuperPathways for NFKBIB Gene

genes like me logo Genes that share pathways with NFKBIB: view

PCR Array Products

  • Pathway & Disease-focused RT² Profiler PCR Arrays

Gene Ontology (GO) - Biological Process for NFKBIB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002224 toll-like receptor signaling pathway TAS --
GO:0002755 MyD88-dependent toll-like receptor signaling pathway TAS --
GO:0002756 MyD88-independent toll-like receptor signaling pathway TAS --
GO:0006351 transcription, DNA-templated TAS 7776974
GO:0007165 signal transduction TAS 7776974
genes like me logo Genes that share ontologies with NFKBIB: view

Compounds for NFKBIB Gene

(5) Novoseek inferred chemical compound relationships for NFKBIB Gene

Compound -log(P) Hits PubMed IDs
paclitaxel 10.1 1
aspirin 1.37 1
potassium 0 2
serine 0 2
h2o2 0 1
genes like me logo Genes that share compounds with NFKBIB: view

Transcripts for NFKBIB Gene

Unigene Clusters for NFKBIB Gene

Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, beta:
Representative Sequences:

miRNA Products

Inhibitory RNA Products

  • Predesigned siRNA for gene silencing in human,mouse,rat for NFKBIB

Primer Products

Flow Cytometry Products

Alternative Splicing Database (ASD) splice patterns (SP) for NFKBIB Gene

ExUns: 1 ^ 2a · 2b · 2c ^ 3a · 3b ^ 4 ^ 5a · 5b ^ 6a · 6b · 6c ^ 7
SP1:
SP2: - - -
SP3: - -
SP4: -

Relevant External Links for NFKBIB Gene

GeneLoc Exon Structure for
NFKBIB
ECgene alternative splicing isoforms for
NFKBIB

Expression for NFKBIB Gene

mRNA expression in normal human tissues for NFKBIB Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues for NFKBIB Gene

This gene is overexpressed in Blymphocyte (15.4), Peripheral blood mononuclear cells (14.4), and Testis (9.9).

Integrated Proteomics: protein expression from ProteomicsDB, PaxDb, and MOPED for NFKBIB Gene

SOURCE GeneReport for Unigene cluster for NFKBIB Gene Hs.9731

mRNA Expression by UniProt/SwissProt for NFKBIB Gene

Q15653-IKBB_HUMAN
Tissue specificity: Expressed in all tissues examined
genes like me logo Genes that share expressions with NFKBIB: view

Expression partners for NFKBIB Gene

In Situ Assay Products

No data available for mRNA differential expression in normal tissues for NFKBIB Gene

Orthologs for NFKBIB Gene

This gene was present in the common ancestor of animals.

Orthologs for NFKBIB Gene

Organism Taxonomy Gene Similarity Type Details
cow
(Bos Taurus)
Mammalia NFKBIB 35
  • 86.65 (n)
  • 88.92 (a)
NFKBIB 36
  • 88 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NFKBIB 35
  • 88.01 (n)
  • 90.37 (a)
NFKBIB 36
  • 89 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nfkbib 35
  • 80.66 (n)
  • 83.1 (a)
Nfkbib 16
Nfkbib 36
  • 84 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NFKBIB 35
  • 98.88 (n)
  • 99.16 (a)
NFKBIB 36
  • 90 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nfkbib 35
  • 80.19 (n)
  • 80.85 (a)
oppossum
(Monodelphis domestica)
Mammalia NFKBIB 36
  • 70 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 36
  • 30 (a)
ManyToMany
chicken
(Gallus gallus)
Aves NFKBIB 35
  • 63.31 (n)
  • 60.89 (a)
lizard
(Anolis carolinensis)
Reptilia NFKBIB 36
  • 52 (a)
OneToOne
zebrafish
(Danio rerio)
Actinopterygii si:dkeyp-110c7.1 35
  • 50.64 (n)
  • 43.4 (a)
NFKBIB 36
  • 29 (a)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta cact 36
  • 17 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 18 (a)
OneToMany
Species with no ortholog for NFKBIB:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NFKBIB Gene

ENSEMBL:
Gene Tree for NFKBIB (if available)
TreeFam:
Gene Tree for NFKBIB (if available)

Paralogs for NFKBIB Gene

Paralogs for NFKBIB Gene

Selected SIMAP similar genes for NFKBIB Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with NFKBIB: view

Variants for NFKBIB Gene

Sequence variations from dbSNP and Humsavar for NFKBIB Gene

SNP ID Clin Chr 19 pos Sequence Context AA Info Type MAF
rs2241704 -- 38,905,695(+) CCCAG(A/T)TGATT intron-variant
rs2241705 -- 38,905,917(+) CCAGC(A/C)ATGGG intron-variant
rs3136640 -- 38,905,660(+) GCCCA(C/G)ACATC intron-variant
rs3136641 -- 38,906,009(+) CTCCC(C/T)TGCCT intron-variant
rs3136642 -- 38,907,776(+) CAGGC(A/G)GCAGC intron-variant, nc-transcript-variant

Structural Variations from Database of Genomic Variants (DGV) for NFKBIB Gene

Variant ID Type Subtype PubMed ID
nsv911674 CNV Loss 21882294
esv2718538 CNV Deletion 23290073
esv2414967 CNV Deletion 18987734
esv3793 CNV Deletion 18987735
esv2718539 CNV Deletion 23290073
nsv911675 CNV Gain 21882294
nsv911676 CNV Loss 21882294
nsv911677 CNV Loss 21882294
nsv820174 CNV Gain 19587683

Relevant External Links for NFKBIB Gene

HapMap Linkage Disequilibrium report
NFKBIB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NFKBIB Gene

Disorders for NFKBIB Gene

(1) Novoseek inferred disease relationships for NFKBIB Gene

Disease -log(P) Hits PubMed IDs
necrosis 36 1

Relevant External Links for NFKBIB

Genetic Association Database (GAD)
NFKBIB
Human Genome Epidemiology (HuGE) Navigator
NFKBIB
genes like me logo Genes that share disorders with NFKBIB: view

No data available for MalaCards , OMIM , UniProtKB/Swiss-Prot , University of Copenhagen DISEASES and Genatlas for NFKBIB Gene

Publications for NFKBIB Gene

  1. Genetic variation in the nuclear factor kappaB pathway in relation to susceptibility to rheumatoid arthritis. (PMID: 18434448) Dieguez-Gonzalez R. … Gonzalez A. (Ann. Rheum. Dis. 2009) 3 23 48
  2. KappaB-Ras binds to the unique insert within the ankyrin repeat domain of IkappaBbeta and regulates cytoplasmic retention of IkappaBbeta.NF-kappaB complexes. (PMID: 12672800) Chen Y. … Ghosh G. (J. Biol. Chem. 2003) 3 4 23
  3. A subclass of Ras proteins that regulate the degradation of IkappaB. (PMID: 10657303) Fenwick C. … Ghosh S. (Science 2000) 3 4 23
  4. Assignment of the IkappaB-beta gene NFKBIB to human chromosome band 19q13.1 by in situ hybridization. (PMID: 9763672) Okamoto T. … Sonta S. (Cytogenet. Cell Genet. 1998) 2 3 23
  5. Inhibition of NF-kappaB activity by IkappaBbeta in association with kappaB-Ras. (PMID: 15024091) Chen Y. … Ghosh G. (Mol. Cell. Biol. 2004) 3 4 23

Products for NFKBIB Gene

Sources for NFKBIB Gene

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