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NFKB1 Gene

protein-coding   GIFtS: 76

GC04P103641
nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database
Services    
(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc , and/or 7Ensembl, 8miRBase)
About This Section

Aliases
DKFZp686C01211 2
EBP-1 2, 3
KBF1 1, 2
MGC54151 2
NF-kappa-B 2
NF-kappabeta 1, 2
NFKB-p105 2
NFKB-p50 1, 2
p105 1, 2
p50 1, 2
Descriptions
DNA binding factor KBF1 2
DNA-binding factor KBF1 3
nuclear factor NF-kappa-B p50 subunit 2
nuclear factor kappa-B DNA binding subunit 2
nuclear factor kappa-B, subunit 1 2
nuclear factor of kappa light polypeptide gene enhancer in
B-cells 1 2
External Ids
HGNC: 77941
Entrez Gene: 47902
UniProtKB: P198383
Ensembl: ENSG000001093207
Search outside databases for aliases for NFKB1 gene

Previous GC identifers: GC04P103821 GC04P103880 GC04P103779

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

EntrezGene summary for NFKB1:
This gene encodes a 105 kD protein which can undergo cotranslational processing by the 26S
proteasome to produce a 50 kD protein. The 105 kD protein is a Rel protein-specific transcription
inhibitor and the 50 kD protein is a DNA binding subunit of the NF-kappa-B (NFKB) protein complex.
NFKB is a transcription regulator that is activated by various intra- and extra-cellular stimuli
such as cytokines, oxidant-free radicals, ultraviolet irradiation, and bacterial or viral
products. Activated NFKB translocates into the nucleus and stimulates the expression of genes
involved in a wide variety of biological functions. Inappropriate activation of NFKB has been
associated with a number of inflammatory diseases while persistent inhibition of NFKB leads to
inappropriate immune cell development or delayed cell growth. [provided by RefSeq]

UniProtKB/Swiss-Prot: NFKB1_HUMAN, P19838
Function: NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell
types and is involved in many biological processed such as inflammation, immunity,
differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric
complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50,
REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The
dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have
distinct preferences for different kappa-B sites that they can bind with distinguishable affinity
and specificity. Different dimer combinations act as transcriptional activators or repressors,
respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification
and subcellular compartmentalization as well as by interactions with other cofactors or
corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with
members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway,
I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators,
subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the
nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators.
The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional
activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic
retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational
processing. The proteasome-mediated process ensures the production of both p50 and p105 and
preserves their independent function, although processing of NFKB1/p105 also appears to occur
post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the
enhancer region of genes involved in immune response and acute phase reactions. In a complex with
MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by
proteasome-dependent degradation of NFKB1/p105

Gene Wiki entry for NFKB1

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:
UCSC Golden Path with GeneCards custom track

 Transcription factor binding sites upstream to the NFKB1 gene  

Entrez Gene cytogenetic band: 4q24   Ensembl cytogenetic band:  4q24   HGNC cytogenetic band: 4q24

NFKB1 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 4         GeneLoc Exon Structure

GeneLoc location for GC04P103641:     (about GC identifiers)

Start:
103,641,518 bp from pter
End:
103,757,507 bp from pter
Size:
115,990 bases
Orientation:
plus strand
RefSeq DNA sequence:
NC_000004.10  NT_016354.18  
(According to 1UniProtKB, and/or Ensembl, Phosphorylation sites according to 2Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
About This Section

UniProtKB/Swiss-Prot: NFKB1_HUMAN, P19838 (See protein sequence)
Recommended Name: Nuclear factor NF-kappa-B p105 subunit  
Size: 968 amino acids; 105356 Da
Subunit: Component of the NF-kappa-B p65-p50 complex. Component of the NF-kappa-B p65-p50 complex.
Homodimer; component of the NF-kappa-B p50-p50 complex. Component of the NF-kappa-B p105-p50
complex. Component of the NF-kappa-B p50-c-Rel complex. Component of a complex consisting of the
NF-kappa-B p50-p50 homodimer and BCL3. Also interacts with MAP3K8. NF-kappa-B p50 subunit
interacts with NCOA3 coactivator, which may coactivate NF-kappa-B dependent expression via its
histone acetyltransferase activity. Interacts with DSIPI; this interaction prevents nuclear
translocation and DNA-binding. Interacts with SPAG9 and UNC5CL. NFKB1/p105 interacts with CFLAR;
the interaction inhibits p105 processing into p50. NFKB1/p105 forms a ternary complex with MAP3K8
and TNIP2. Interacts with GSK3B; the interaction prevents processing of p105 to p50. NFKB1/p50
interacts with NFKBIE. NFKB1/p50 interacts with NFKBIZ. Nuclear factor NF-kappa-B p50 subunit
interacts with NFKBID (By similarity)
Subcellular location: Nucleus. Cytoplasm. Note=Nuclear, but also found in the cytoplasm in an
inactive form complexed to an inhibitor (I-kappa-B)
PDB structures from and Proteopedia :
1MDI (3D)    1MDJ (3D)    1MDK (3D)    1NFI (3D)    1SVC (3D)    2DBF (3D)    2O61 (3D)    
Secondary accessions: Q68D84 Q86V43 Q8N4X7 Q9NZC0
Alternative splicing: 2 isoforms:  P19838-1   P19838-2   

Post-translational modifications:

  • While translation occurs, the particular unfolded structure after the GRR repeat promotes the
    generation of p50 making it an acceptable substrate for the proteasome. This process is known as
    cotranslational processing. The processed form is active and the unprocessed form acts as an
    inhibitor (I kappa B-like), being able to form cytosolic complexes with NF-kappa B, trapping it in
    the cytoplasm. Complete folding of the region downstream of the GRR repeat precludes processing1
  • Phosphorylation at 'Ser-903' and 'Ser-907' primes p105 for proteolytic processing in response to
    TNF-alpha stimulation. Phosphorylation at 'Ser-927' and 'Ser-932' are required for
    BTRC/BTRCP-mediated proteolysis1
  • Polyubiquitination seems to allow p105 processing1
  • S-nitrosylation of Cys-61 affects DNA binding1
  • View phosphorylation sites using PhosphoSite2


  • REFSEQ proteins: NP_003989.2  

    ENSEMBL proteins: 
    ENSP00000226574 ENSP00000378297 


    Human Recombinant Proteins 
    Browse Drug Discovery Central at Invitrogen for human recombinant proteins
    Millipore Purified and/or Recombinant NFKB1 Protein
    Sigma-Aldrich CompoZr ZFN for NFKB1  
    Browse R&D Systems for human recombinant proteins
    Enzo Life Sciences proteins for NFKB1
    Recombinant Proteins from Abcam (NFkB p105 / p50)
    Human Recombinant Proteins from Abnova (NFKB1)
                    Browse Origene for full length recombinant human proteins expressed in human HEK293 cells 

    5 Gene Ontology (GO) cellular component terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005634 nucleus IDA11819787
    GO:0005654 nucleoplasm EXP10723127
    GO:0005737 cytoplasm IDA11819787
    GO:0005829 cytosol EXP10723127
    GO:0033256 I-kappaB/NF-kappaB complex TAS16938301
    About this table

    Antibodies for NFKB1: 
    Invitrogen Antibodies for NFKB1
    Millipore Mono- and Polyclonal Antibodies for the study of NFKB1
    Sigma-Aldrich Antibody Arrays and Antibodies for NFKB1
    R&D Systems Antibodies for NFKB1
    Cell Signaling Technology (CST) Antibodies for NFKB1  (NF-kB1)
    Antibodies from Abcam (NFkB p105 / p50), each with their AbpromiseSM
    Monoclonal and Polyclonal Antibodies from Abnova (NFKB1)
    Novus Biologicals Antibodies for NFKB1

    Assays for NFKB1: 
    Invitrogen Assays for NFKB1
    Millipore Kits and Assays for the Analysis of NFKB1
    Browse R&D Systems for biochemical assays
    Browse biochemical assays available from Enzo Life Sciences

    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    5/7 InterPro domains/families (see all 7 ):
     IPR011029 DEATH-like
     IPR002909 IPT_TIG_rcpt
     IPR000488 Death
     IPR000451 NF_Rel_dor
     IPR013783 Ig-like_fold


       GeneDecks  NFKB1 for the domains selected above  
    About GeneDecksing

    Graphical View of Domain Structure for InterPro Entry P19838

    ProtoNet protein and cluster: P19838

    4 Blocks protein families:
    IPB000451 NF-kappa-B/Rel/dorsal family
    IPB000488 Death domain
    IPB002909 Cell surface receptor IPT/TIG
    IPB011539 Rel homology


    UniProtKB/Swiss-Prot: NFKB1_HUMAN, P19838
    Domain: The C-terminus of p105 might be involved in cytoplasmic retention, inhibition of
    DNA-binding, and transcription activation
    Domain: Glycine-rich region (GRR) appears to be a critical element in the generation of p50
    Similarity: Contains 7 ANK repeats
    Similarity: Contains 1 death domain
    Similarity: Contains 1 RHD (Rel-like) domain

    (According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
    shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
    RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (NFKB1)
    Millipore RNAi Products for the Analysis of NFKB1 Gene knock-down
    Abnova Chimera RNAi Products for Gene knock-down (NFKB1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003998

                  Applied Biosystems Silencer® siRNAs for NFKB1

                  Sigma-Aldrich siRNA for NFKB1  
                         Sigma-Aldrich shRNA Panels and shRNA for NFKB1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Clones:Invitrogen Clones for NFKB1
    Browse Clones for the Expression of Recombinant Proteins Available from Millipore
                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003998
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003998
                                     untagged cDNA clone in CMV expression vector: NM_003998 

    Primers: Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers
                  OriGene genome-wide validated SYBR primer pairs: NM_003998

    UniProtKB/Swiss-Prot: NFKB1_HUMAN, P19838
    Function: NF-kappa-B is a pleiotropic transcription factor which is present in almost all cell
    types and is involved in many biological processed such as inflammation, immunity,
    differentiation, cell growth, tumorigenesis and apoptosis. NF-kappa-B is a homo- or heterodimeric
    complex formed by the Rel-like domain-containing proteins RELA/p65, RELB, NFKB1/p105, NFKB1/p50,
    REL and NFKB2/p52 and the heterodimeric p65-p50 complex appears to be most abundant one. The
    dimers bind at kappa-B sites in the DNA of their target genes and the individual dimers have
    distinct preferences for different kappa-B sites that they can bind with distinguishable affinity
    and specificity. Different dimer combinations act as transcriptional activators or repressors,
    respectively. NF-kappa-B is controlled by various mechanisms of post-translational modification
    and subcellular compartmentalization as well as by interactions with other cofactors or
    corepressors. NF-kappa-B complexes are held in the cytoplasm in an inactive state complexed with
    members of the NF-kappa-B inhibitor (I-kappa-B) family. In a conventional activation pathway,
    I-kappa-B is phosphorylated by I-kappa-B kinases (IKKs) in response to different activators,
    subsequently degraded thus liberating the active NF-kappa-B complex which translocates to the
    nucleus. NF-kappa-B heterodimeric p65-p50 and RelB-p50 complexes are transcriptional activators.
    The NF-kappa-B p50-p50 homodimer is a transcriptional repressor, but can act as a transcriptional
    activator when associated with BCL3. NFKB1 appears to have dual functions such as cytoplasmic
    retention of attached NF-kappa-B proteins by p105 and generation of p50 by a cotranslational
    processing. The proteasome-mediated process ensures the production of both p50 and p105 and
    preserves their independent function, although processing of NFKB1/p105 also appears to occur
    post-translationally. p50 binds to the kappa-B consensus sequence 5'-GGRNNYYCC-3', located in the
    enhancer region of genes involved in immune response and acute phase reactions. In a complex with
    MAP3K8, NFKB1/p105 represses MAP3K8-induced MAPK signaling; active MAP3K8 is released by
    proteasome-dependent degradation of NFKB1/p105
    Induction: By phorbol ester and TNF-alpha

    Genatlas biochemistry entry for NFKB1:
    nuclear transcription factor of kappa light chain gene enhancer in B cells,1,(encoding the p105
    precursor and the amino-terminal active p50 subunit),NF-kappa B/REL family

    15/17 MGI mutant phenotypes (inferred from 4 alleles(MGI details for Nfkb1) (see all 17 ):

    behavior/neurologicalcellulardigestive/alimentarygrowth/sizehearing/vestibular/ear
    hematopoietic systemhomeostasis/metabolismimmune systemlethality-postnatallethality-prenatal/perinatal
    life span-post-weaning/agingliver/biliary systemmusclenervous systemnormal

    5 Gene Ontology (GO) molecular function terms (links to tree view):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0003700 transcription factor activity TAS10928981
    GO:0005515 protein binding IPI8196632 11526476 14624448 16108830 16306601
    GO:0010843 promoter binding IDA16938301
    GO:0016566 specific transcriptional repressor activity IEA--
    GO:0042803 protein homodimerization activity IEA--
    About this table

    (Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
    Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to 1UniProtKB, 2MINT, and/or 3STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
    About This Section

    5/37 Invitrogen iPath™ Online BioAtlas - Pathways for NFKB1 (see all 37 ) (Maps provided by GeneGo):
     IL4 signaling pathway
     A2BR signaling via G-alpha-q: PRKCB/G/Q specific pathways (map 3a)
     Putative SUMO-1 pathway
     PDGF signaling via STATs and NF-kB
     TCR and CD28 co-stimulation in activation of NF-kB

       GeneDecks  NFKB1 for the pathways selected above  
    About GeneDecksing

    5/49 Millipore Pathways for NFKB1 (see all 49 )
     Immune response MIF-mediated glucocorticoid regulation
     Immune response MIF in innate immunity response
     Development TGF-beta receptor signaling
     Immune response IL-1 signaling pathway
     Immune response Toll-like receptor (TLR) ligands and common TLR signaling pathway leading to cell proinflammatory response

       GeneDecks  NFKB1 for the pathways selected above  
    About GeneDecksing

    5/64 Sigma-Aldrich "Your Favorite Gene" Pathways for  NFKB1  (Your Favorite Gene powered by Ingenuity) (see all 64
     IL-15 Signaling
     B Cell Receptor Signaling
     Apoptosis Signaling
     RAR Activation
     Prostate Cancer Signaling

       GeneDecks  NFKB1 for the pathways selected above  
    About GeneDecksing

    1 Cell Signaling Technology (CST) Pathway for NFKB1: 
     NF-kB Signaling

       GeneDecks  NFKB1 for the pathways selected above  
    About GeneDecksing

    5/13 Kegg Pathways  (Kegg details for NFKB1) (see all 13 ):
     hsa04010 MAPK signaling pathway
     hsa04210 Apoptosis
     hsa04620 Toll-like receptor signaling pathway
     hsa04660 T cell receptor signaling pathway
     hsa04662 B cell receptor signaling pathway

       GeneDecks  NFKB1 for the pathways selected above  
    About GeneDecksing
     Gene Network CentralTM Interacting Genes and Proteins Network for  NFKB1 


    5/298 Interacting proteins for NFKB1 (ENSP000002265743 P198381, 2) via UniProtKB, MINT, and/or STRING (see all 298 )
    InteractantInteraction Details
    GeneCardExternal ID(s)
    NFKB2Q006532STRING (score=.964) MINT-48553 MINT-6178467 MINT-6178504 MINT-47910 MINT-48724 MINT-6178544 MINT-48674 MINT-47890 MINT-48585 MINT-6178520 MINT-47923 MINT-6178488
    COMMD1Q8N6681STRING (score=.729) EBI-1452242, EBI-1550112
    PDCD11Q146901STRING (score=.825) EBI-300010, EBI-300028
    RELBQ012012STRING (score=.982) MINT-48017 MINT-48562 MINT-6178544 MINT-48996 MINT-6178520 MINT-47912 MINT-6178488 MINT-48690
    RELQ048642STRING (score=.991) MINT-6178520 MINT-48666 MINT-6178504 MINT-47884 MINT-48548 MINT-47902 MINT-6178544
    About this table

    5/13 Gene Ontology (GO) biological process terms (links to tree view) (see all 13 ):

    GO IDQualified GO termEvidencePubMed IDs
    GO:0006915 apoptosis IEA--
    GO:0006916 anti-apoptosis TAS10811897
    GO:0006954 inflammatory response TAS1992489
    GO:0007165 signal transduction IEA--
    GO:0010553 negative regulation of specific transcription from RNA polymerase II promoter IC16938301
    About this table
    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
    About This Section

    Enzo Life Sciences drugs & compounds for NFKB1
    Sigma-Aldrich Small Molecules for NFKB1:
    Antagonist Blocker Inhibitor

    Compounds for NFKB1 available from Tocris Bioscience
    CompoundAction CAS number
    Bay 11-7821Irreversible inhibitor of TNF-alpha-induced IkappaBalpha phosphorylation[19542-67-7]
    LuteolinAnti-inflammatory, antioxidant and free radical scavenger[491-70-3]
    Caffeic acid phenethyl esterSpecific inhibitor of NF-kappaB activation[104594-70-9]
    Bay 11-7085Irreversible inhibitor of TNF-alpha-induced IkappaBalpha phosphorylation[196309-76-9]
    About this table


    1 Novoseek chemical compound relationship for NFKB1 gene
    Compound   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    nitric oxide 0.00 1 16964402 (1)
    About this table


    (GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView,
    non coding RNAs according to RNAdb,
    ESTs according to GeneTide,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from Invitrogen, Millipore, and/or Abnova,
    siRNAs from Applied Biosystems, Sigma-Aldrich,
    shRNA from Sigma-Aldrich, OriGene,
    Tagged/untagged cDNA clones from OriGene,
    Expression Assays from Applied Biosystems)
    About This Section

    Inhib.
    RNA:
    Invitrogen RNAi Products for gene knock-down (NFKB1)
    Millipore RNAi Products for the Analysis of NFKB1 Gene knock-down
    Abnova Chimera RNAi Products for Gene knock-down (NFKB1)
                  OriGene 29mer shRNA kit in GFP-retroviral vector: NM_003998

                  Sigma-Aldrich siRNA for NFKB1  
                         Sigma-Aldrich shRNA Panels and shRNA for NFKB1  
                         Explore Sigma-Aldrich super-pooled esiRNAs  

    Applied Biosystems Silencer® siRNAs: 

    NM_003998  

    REFSEQ mRNAs for NFKB1 gene: 

    NM_003998.2   

    Applied Biosystems TaqMan ® Gene Expression Assays: 

    NM_003998  

                  OriGene GFP tagged cDNA clone in CMV expression vector: NM_003998
                                     Myc/DDK tagged cDNA clone in CMV expression vector: NM_003998
                                     untagged cDNA clone in CMV expression vector: NM_003998 

    Additional cDNA sequence: 

    AK122850.1 AK291450.1 BC033210.1 BC051765.1 CR749522.1 M55643.1 M58603.1 

    13 DOTS entries:

    DT.91766168  DT.100723199  DT.100744892  DT.316891  DT.95258128  DT.100752227  DT.121254190  DT.101962127 
    DT.121254226  DT.316893  DT.40260693  DT.95288477  DT.40117323 

    24/221 AceView cDNA sequences (see all 221 ):

    CB117382 CB150024 BQ962865 CB529452 BM931012 BE885945 CA421974 BQ687254 
    BQ677391 AW612589 N41629 H44239 CA313061 BQ879031 AA213622 H44238 
    BQ189331 AW511634 AK122850 BC033210 BI858055 BG120328 BQ023914 AI333374 

    highest scoring ESTs for NFKB1:

    M58603 AA098834 AA134618 AA258085 AK122850 AW389922 AW801929 AW949720 BC033210 BC051765 

    Unigene Cluster for NFKB1:

    Nuclear factor of kappa light polypeptide gene enhancer in B-cells 1
    Hs.654408  [show with all ESTs]
    Unigene Representative Sequence: NM_003998


    GeneLoc Exon Structure

    5 Alternative Splicing Database (ASD) splice patterns (SP) for NFKB1

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5a · 5b ^ 6a · 6b ^ 7 ^ 8a · 8b ^ 9 ^ 10 ^ 11 ^ 12a · 12b ^ 13 ^ 14a · 14b ^ 15 ^ 16 ^ 17 ^ 18 ^ 19 ^ 20 ^ 21 ^
    SP1:                          -                             -                             -                                                                     
    SP2:                          -                             -                             -                                                                     
    SP3:                                                                                      -                                                                     
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                            

    ExUns: 22 ^ 23 ^ 24a · 24b · 24c
    SP1:                              
    SP2:                              
    SP3:                              
    SP4:                              
    SP5:                              

    About this scheme

    ECgene alternative splicing isoforms for NFKB1

    2 Ensembl transcripts including schematic representations:
    ENST00000226574  ENST00000394820  
    (Experimental results according to 1GeneNote and GNF BioGPS,
    probe sets-to-genes annotations according to 2GeneAnnot , 3GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
    Expression Assays from Applied Biosystems )
    About This Section

    NFKB1 expression in normal and diseased human tissues

     Applied Biosystems TaqMan ® Gene Expression Assays for NFKB1

    1 / 2 / 3

    5 probe-sets matching NFKB1 gene


    Affymetrix
    probe-set
    Array  GeneAnnot data GeneNote data GeneTide data
    # genes Sensitivity Specificity Correlation Length Gb_Accession Consensus Uniqueness Score Rank

    1377_at2, 3 U95-A 1 1.00 1.00 0.98 0.91 M58603 1.00 1.00 1.00 1
    1378_g_at2, 3 U95-A 1 1.00 1.00 0.94 0.86 M58603 1.00 1.00 1.00 1

    38438_at2, 3 U95-A 2 1.00 0.97 0.77 1.23 M58603 1.00 1.00 1.00 1

    209239_at2, 3 U133-A 1 1.00 1.00 -- -- M55643 0.80 1.00 0.91 1

    209239_at2 U133Plus2 1 1.00 1.00 -- -- -- -- -- -- --
    GeneDecks  NFKB1 for binary patterns associated with the probe-sets selected above  
    About GeneDecksing
    About this table    
    Data from (Publications) and GNF BioGPS
        About these images
    About these images

    CGAP SAGE TAG: GTTACAATCA

    SOURCE GeneReport for Unigene cluster: Hs.654408

    Expression variation in blood from EXPOLDB for NFKB1

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD and/or 5MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
    About This Section


    Orthologs for NFKB1 gene from 5/9 species (see all 9 )
    Organism Gene Locus Description Human
    Similarity
    NCBI accessions
    dog
    (Canis familiaris)
    NFKB11   -- nuclear factor of kappa light polypeptide gene enhancer more 89.87(n)
    91.49(a)
    442859  NM_001003344.1  NP_001003344.1 
    chimpanzee
    (Pan troglodytes)
    NFKB11   -- nuclear factor of kappa light polypeptide gene enhancer more 99.75(n)
    100(a)
    461406  XM_001168506.1  XP_001168506.1 
    cow
    (Bos taurus)
    NFKB11   -- nuclear factor of kappa light polypeptide gene enhancer more 88.92(n)
    92(a)
    616115  NM_001076409.1  NP_001069877.1 
    rat
    (Rattus norvegicus)
    Nfkb11   -- nuclear factor of kappa light polypeptide gene enhancer more 84.42(n)
    87.44(a)
    81736  XM_342346.3  XP_342347.2 
    mouse
    (Mus musculus)
    Nfkb11, 5 3 (68.90 cM)5
    nuclear factor of kappa light polypeptide gene enhancer more1, 5 84.46(n)1
    87.75(a)1
    180331  NM_008689.21  NP_032715.21 
     AB1191955  AB2216145  (see all 28)
    About this table        Species with no ortholog for NFKB1

    ENSEMBL Gene Tree for NFKB1
    (Paralogs according to 1HomoloGene
    and 2Ensembl, Pseudogenes according to 3Pseudogene.org)
    About This Section

    Paralogs for NFKB1 gene
    REL2  NFKB22  RELB2  RELA2  

    (According to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
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    10/677 NCBI SNPs in NFKB1 are shown (see all 677 )
    (Click for Applied Biosystems TaqMan ® Genotyping Assay)  (see all 294)
    ABGenomic DataTranscription DataAllele Frequencies
    SNP IDValidChr 4 posSequenceRecsAA
    Chg
    TypeMoreRecsAllele
    freq
    PopTotal
    sample
    More
    ------------
    --
    rs46480991,2
    C,F,H103747855(+) GCCCAT/GGTGGA 1 Q/H mis1 ese318Minor allele frequency- G:0.02NS EU EA WA NA 1816
    rs46480721,2
    C,F,H103737738(+) AGGCTA/GTGCAG 1 M/V mis113Minor allele frequency- G:0.19NS NA EU EA WA 1232
    rs46480851,2
    F,H103741152(+) AGTCAC/TATCTG 1 T/I mis1 ese35Minor allele frequency- T:0.00NS EU EA WA 596
    rs46481441,2
    F,H103756929(+) TAACTC/TGAGAC 1 -- ut31 ese35Minor allele frequency- T:0.00NS EU EA WA 588
    rs119400171,2
    C,F103639791(+) ATTTAT/CCTATC 1 -- ng51 tfbs34Minor allele frequency- C:0.09NA EA 362
    --
    rs283624911,2
    C,F103641187(+) CGACCATTG/-  
            
    ATTGG
    1 -- ng51 tfbs32Minor allele frequency- -:0.36MN EA 1252
    rs46481451,2
    H103757048(+) GAGGTT/GGCTTA 1 -- ut31 ese35Minor allele frequency- G:0.00NS EU EA WA 572
    rs46480861,2
    H103741188(+) CATGAG/AAAATG 1 K/R mis15Minor allele frequency- A:0.00NS EU EA WA 594
    --
    rs46480651,2
    H103736501(+) AGGAAC/TAAAAG 1 T/I mis1 ese35Minor allele frequency- T:0.00NS EU EA WA 584
    rs46481431,2
    F103756820(+) ACACCG/ATGTAA 1 -- ut31 ese31Minor allele frequency- A:0.02NS 176
    About this table

    HapMap Linkage Disequilibrium images for NFKB1 (up to first 250kb)

    (in which this Gene is Involved, According to OMIM, UniProtKB, Novoseek, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
    About This Section

    OMIM: 164011

    10 Novoseek disease relationships for NFKB1 gene

    Disease   Score   Articles   PubMed IDs for Articles with Shared Sentences (# sentences)
    leukemia t-cell 39.23 4 16778171 (3)
    colitis ulcerative 38.62 4 14613970 (2), 16804398 (1), 17852842 (1)
    necrosis 22.52 2 12839942 (1), 16964402 (1)
    inflammation 20.77 1 18315734 (1)
    tumors 14.59 7 17725175 (2), 16740744 (1), 12839942 (1), 16964402 (1)
    colorectal cancer 11.24 4 17852842 (2), 12839942 (1)
    vasculitis 5.43 1 15262741 (1)
    leukemia 4.72 2 1612589 (1), 9619918 (1)
    breast cancer 0.00 4 12406554 (3), 17487680 (1)
    diabetes mellitus 0.00 1 17318773 (1)
    About this table

    1 PharmGKB disease relationship for NFKB1 gene
    Disease PharmGKB Relations PubMed IDs for articles supporting these relationships
    Leukemia, Lymphocytic, Acute, L1FA  GN  12086872
    About this table

    Human Gene Mutation Database: NFKB1
    Genetic Association Database: NFKB1
    Human Genome Epidemiology Navigator: NFKB1 (52 documents)
    Tumor Gene Database: NFKB1

    (Possibly Related Articles in Doctor's Guide)
    About This Section

      --

    (in PubMed. Associations of this gene to articles via 1Novoseek, 2HGNC, 3Entrez Gene, 4UniProtKB/Swiss-Prot, 5UniProtKB/TrEMBL, 6GAD, and/or 7PharmGKB)
    About This Section

    44/1041 PubMed articles for NFKB1 gene (see all 1041 ):
    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section

     ANDOR
    Aliases
    Search String
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)
    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
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    Entrez Gene: 4790 HGNC: 7794 AceView: NFKB1 Ensembl:ENSG00000109320 euGenes: HUgn4790
    ECgene: NFKB1 H-InvDB: NFKB1
    (According to HUGE)
    About This Section

      --
    (According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section

    NameDescription
    ATLAS Chromosomes in Cancer entry for NFKB1 Genetics and Cytogenetics in Oncology and Haematology
    NIEHS-SNPshttp://egp.gs.washington.edu/data/nfkb1/
    (Available from WIS Yeda, Salk, Tufts)
    About This Section

      --
    (Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
    Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
    Enzo Life Sciences, and/or Tocris Bioscience)
    About This Section



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