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Aliases for NFIB Gene

Aliases for NFIB Gene

  • Nuclear Factor I B 2 3
  • Nuclear Factor I/B 2 3 4 5
  • CCAAT-Box-Binding Transcription Factor 3 4
  • TGGCA-Binding Protein 3 4
  • Nuclear Factor 1/B 3 4
  • NF-I/B 3 4
  • NF1-B 3 4
  • NFI-B 3 4
  • CTF 3 4
  • HMGIC/NFIB 3
  • NFI-RED 3
  • NFIB2 3
  • NFIB3 3

External Ids for NFIB Gene

Previous GeneCards Identifiers for NFIB Gene

  • GC09M014252
  • GC09M014068

Summaries for NFIB Gene

GeneCards Summary for NFIB Gene

NFIB (Nuclear Factor I B) is a Protein Coding gene. Diseases associated with NFIB include Polymorphous Low-Grade Adenocarcinoma and Large Intestine Lipoma. Among its related pathways are RNA Polymerase III Transcription Initiation and Gene Expression. GO annotations related to this gene include transcription factor activity, sequence-specific DNA binding and transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding. An important paralog of this gene is NFIX.

UniProtKB/Swiss-Prot for NFIB Gene

  • Recognizes and binds the palindromic sequence 5-TTGGCNNNNNGCCAA-3 present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Gene Wiki entry for NFIB Gene

No data available for Entrez Gene Summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NFIB Gene

Genomics for NFIB Gene

Regulatory Elements for NFIB Gene

Enhancers for NFIB Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NFIB on UCSC Golden Path with GeneCards custom track

Genomic Location for NFIB Gene

Chromosome:
9
Start:
14,081,843 bp from pter
End:
14,398,983 bp from pter
Size:
317,141 bases
Orientation:
Minus strand

Genomic View for NFIB Gene

Genes around NFIB on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFIB Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFIB Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFIB Gene

Proteins for NFIB Gene

  • Protein details for NFIB Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    O00712-NFIB_HUMAN
    Recommended name:
    Nuclear factor 1 B-type
    Protein Accession:
    O00712
    Secondary Accessions:
    • G3V1P1
    • H7BYE8
    • O00166
    • Q12858
    • Q5VW29
    • Q63HM5
    • Q6ZNF9
    • Q96J45

    Protein attributes for NFIB Gene

    Size:
    420 amino acids
    Molecular mass:
    47442 Da
    Quaternary structure:
    • Binds DNA as a homodimer.

    Alternative splice isoforms for NFIB Gene

neXtProt entry for NFIB Gene

Proteomics data for NFIB Gene at MOPED

Post-translational modifications for NFIB Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

No data available for DME Specific Peptides for NFIB Gene

Domains & Families for NFIB Gene

Graphical View of Domain Structure for InterPro Entry

O00712

UniProtKB/Swiss-Prot:

NFIB_HUMAN :
  • Contains 1 CTF/NF-I DNA-binding domain.
  • Belongs to the CTF/NF-I family.
Domain:
  • Contains 1 CTF/NF-I DNA-binding domain.
Family:
  • Belongs to the CTF/NF-I family.
genes like me logo Genes that share domains with NFIB: view

No data available for Gene Families for NFIB Gene

Function for NFIB Gene

Molecular function for NFIB Gene

GENATLAS Biochemistry:
nuclear transcription factor I B,DNA binding protein
UniProtKB/Swiss-Prot Function:
Recognizes and binds the palindromic sequence 5-TTGGCNNNNNGCCAA-3 present in viral and cellular promoters and in the origin of replication of adenovirus type 2. These proteins are individually capable of activating transcription and replication.

Gene Ontology (GO) - Molecular Function for NFIB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding IDA 19540848
GO:0001077 transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding IDA 19540848
genes like me logo Genes that share ontologies with NFIB: view
genes like me logo Genes that share phenotypes with NFIB: view

Animal Models for NFIB Gene

MGI Knock Outs for NFIB:

Animal Model Products

miRNA for NFIB Gene

miRTarBase miRNAs that target NFIB
Targeted motifs for NFIB Gene
HOMER Transcription Factor Regulatory Elements motif NFIB
  • Consensus sequence: CTTGGCACNGTGCCAA Submotif: canonical Cell Type: LNCAP

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology and Transcription Factor Targets for NFIB Gene

Localization for NFIB Gene

Subcellular locations from UniProtKB/Swiss-Prot for NFIB Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NFIB Gene COMPARTMENTS Subcellular localization image for NFIB gene
Compartment Confidence
nucleus 5

No data available for Gene Ontology (GO) - Cellular Components for NFIB Gene

Pathways & Interactions for NFIB Gene

genes like me logo Genes that share pathways with NFIB: view

SIGNOR curated interactions for NFIB Gene

Inactivates:
Is activated by:

Gene Ontology (GO) - Biological Process for NFIB Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0002062 chondrocyte differentiation ISS --
GO:0006355 regulation of transcription, DNA-templated IEA --
GO:0021740 principal sensory nucleus of trigeminal nerve development ISS --
GO:0021960 anterior commissure morphogenesis ISS --
GO:0030324 lung development IEA --
genes like me logo Genes that share ontologies with NFIB: view

Drugs & Compounds for NFIB Gene

No Compound Related Data Available

Transcripts for NFIB Gene

Unigene Clusters for NFIB Gene

Nuclear factor I/B:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NFIB Gene

ExUns: 1a · 1b ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9 ^ 10 ^ 11
SP1:
SP2: - -

Relevant External Links for NFIB Gene

GeneLoc Exon Structure for
NFIB
ECgene alternative splicing isoforms for
NFIB

Expression for NFIB Gene

mRNA expression in normal human tissues for NFIB Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

Protein differential expression in normal tissues from HIPED for NFIB Gene

This gene is overexpressed in Heart (20.1), Fetal Brain (12.8), and Ovary (7.8).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MOPED, and MaxQB for NFIB Gene



SOURCE GeneReport for Unigene cluster for NFIB Gene Hs.644095

genes like me logo Genes that share expression patterns with NFIB: view

Protein tissue co-expression partners for NFIB Gene

- Elite partner

Primer Products

No data available for mRNA differential expression in normal tissues and mRNA Expression by UniProt/SwissProt for NFIB Gene

Orthologs for NFIB Gene

This gene was present in the common ancestor of animals.

Orthologs for NFIB Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia NFIB 35
  • 97.07 (n)
  • 98.98 (a)
NFIB 36
  • 85 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Nfib 35
  • 94.27 (n)
  • 98.77 (a)
Nfib 16
Nfib 36
  • 85 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NFIB 35
  • 99.39 (n)
  • 99.18 (a)
NFIB 36
  • 87 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nfib 35
  • 94.87 (n)
  • 99.19 (a)
cow
(Bos Taurus)
Mammalia NFIB 36
  • 82 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NFIB 36
  • 89 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NFIB 36
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves NFIB 35
  • 91.6 (n)
  • 97.13 (a)
NFIB 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NFIB 36
  • 83 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nfib 35
  • 84.64 (n)
  • 95.06 (a)
fruit fly
(Drosophila melanogaster)
Insecta CG2380 37
  • 75 (a)
NfI 36
  • 27 (a)
OneToMany
worm
(Caenorhabditis elegans)
Secernentea nfi-1 37
  • 53 (a)
nfi-1 36
  • 20 (a)
OneToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 36
  • 37 (a)
OneToMany
Species with no ortholog for NFIB:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • zebrafish (Danio rerio)

Evolution for NFIB Gene

ENSEMBL:
Gene Tree for NFIB (if available)
TreeFam:
Gene Tree for NFIB (if available)

Paralogs for NFIB Gene

Paralogs for NFIB Gene

genes like me logo Genes that share paralogs with NFIB: view

Variants for NFIB Gene

Sequence variations from dbSNP and Humsavar for NFIB Gene

SNP ID Clin Chr 09 pos Sequence Context AA Info Type
rs635175 -- 14,387,948(-) GAAGA(A/T)GTGGG intron-variant
rs656983 -- 14,366,587(-) AATCA(C/T)TTGAA intron-variant
rs662526 -- 14,386,477(-) TGTAG(C/G)GTAAG intron-variant
rs663023 -- 14,386,333(-) TAAGA(A/G)ACTAA intron-variant
rs677339 -- 14,378,891(-) CAAAT(C/G)AGAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NFIB Gene

Variant ID Type Subtype PubMed ID
nsv892593 CNV Gain 21882294
nsv892595 CNV Gain 21882294
nsv892596 CNV Gain 21882294
nsv892597 CNV Gain 21882294
esv2673979 CNV Deletion 23128226
esv2738220 CNV Deletion 23290073
nsv892598 CNV Gain 21882294
nsv831516 CNV Loss 17160897
esv2669830 CNV Deletion 23128226
nsv528796 CNV Loss 19592680
nsv892599 CNV Loss 21882294
esv991653 OTHER Inversion 20482838
dgv480n21 CNV Loss 19592680
nsv526315 CNV Loss 19592680
nsv892600 CNV Gain 21882294
nsv892601 CNV Gain 21882294
esv2738221 CNV Deletion 23290073
esv2738222 CNV Deletion 23290073
esv2738223 CNV Deletion 23290073
esv2738224 CNV Deletion 23290073
esv6710 CNV Gain 19470904

Variation tolerance for NFIB Gene

Residual Variation Intolerance Score: 12.7% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.59; 12.63% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NFIB Gene

Human Gene Mutation Database (HGMD)
NFIB

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NFIB Gene

Disorders for NFIB Gene

MalaCards: The human disease database

(8) MalaCards diseases for NFIB Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
polymorphous low-grade adenocarcinoma
  • polymorphous low grade adenocarcinoma
large intestine lipoma
  • lipoma of large intestine
lipoma of colon
  • colonic lipoma
infiltrating lipoma
  • intramuscular lipoma
breast adenoid cystic carcinoma
  • adenoid cystic carcinoma of breast
- elite association - COSMIC cancer census association via MalaCards
Search NFIB in MalaCards View complete list of genes associated with diseases

Relevant External Links for NFIB

Genetic Association Database (GAD)
NFIB
Human Genome Epidemiology (HuGE) Navigator
NFIB
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NFIB
genes like me logo Genes that share disorders with NFIB: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NFIB Gene

Publications for NFIB Gene

  1. Chromosomal localization of the four genes (NFIA, B, C, and X) for the human transcription factor nuclear factor I by FISH. (PMID: 7590749) Qian F. … Sippel A.E. (Genomics 1995) 2 3 4 67
  2. The C-terminal domain of the nuclear factor I-B2 isoform is glycosylated and transactivates the WAP gene in the JEG-3 cells. (PMID: 17511965) Mukhopadhyay S.S. … Rosen J.M. (Biochem. Biophys. Res. Commun. 2007) 3 23
  3. NFI-B3, a novel transcriptional repressor of the nuclear factor I family, is generated by alternative RNA processing. (PMID: 9099724) Liu Y. … Apt D. (J. Biol. Chem. 1997) 3 23
  4. Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing. (PMID: 26871637) Yang X. … Vidal M. (Cell 2016) 3
  5. HIV-1 induced nuclear factor I-B (NF-IB) expression negatively regulates HIV-1 replication through interaction with the long terminal repeat region. (PMID: 25664610) Vemula S.V. … Hewlett I. (Viruses 2015) 3

Products for NFIB Gene

Sources for NFIB Gene

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