Set Analyses:
Advanced Search

Advanced Search

 
Search By
Section (entire)
for


 
or upload a file of gene symbols


Category   Symbol Source: HGNC EntrezGene Ensembl GeneCards RNA genes CroW21
GIFtS

NFASC Gene

protein-coding   GIFtS: 59
GCID: GC01P204797

neurofascin

(Previous name: neurofascin homolog (chicken) )
 Explore 12 diseases affiliated with
NFASC via our new
 Human Malady Compendium 
Biological research products
for NFASC
    

(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, and/or 10fRNAdb)
About This Section

Aliases
Neurofascin1     FLJ468661
NF1 2     Neurofascin Homolog (Chicken)1
NRCAML1 2     Neurofascin Homolog2
KIAA07561 3     

External Ids:    HGNC: 298661   Entrez Gene: 231142   Ensembl: ENSG000001635317   OMIM: 6091455   UniProtKB: O948563   

Export aliases for NFASC gene to outside databases

Previous GC identifers: GC01P202615 GC01P200351 GC01P201158 GC01P202067 GC01P201645 GC01P203064 GC01P175963


(According to Entrez Gene, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Entrez Gene summary for NFASC:
This gene encodes an L1 family immunoglobulin cell adhesion molecule with multiple IGcam and fibronectin domains. The
protein functions in neurite outgrowth, neurite fasciculation, and organization of the axon initial segment (AIS) and
nodes of Ranvier on axons during early development. Both the AIS and nodes of Ranvier contain high densities of
voltage-gated Na+ (Nav) channels which are clustered by interactions with cytoskeletal and scaffolding proteins
including this protein, gliomedin, ankyrin 3 (ankyrin-G), and betaIV spectrin. This protein links the AIS
extracellular matrix to the intracellular cytoskeleton. This gene undergoes extensive alternative splicing, and the
full-length nature of some variants has not been determined.(provided by RefSeq, May 2009)

UniProtKB/Swiss-Prot: NFASC_HUMAN, O94856
Function: Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance,
synaptogenesis, myelination and neuron-glial cell interactions (By similarity)

Gene Wiki entry for NFASC


(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 69), Regulatory elements and Epigenetics data according to QIAGEN, SABiosciences, and/or SwitchGear Genomics)
About This Section
RefSeq DNA sequence:
NC_000001.10  NC_018912.1  NT_004487.19  
Regulatory elements:
   SABiosciences Regulatory transcription factor binding sites in the NFASC gene promoter:
         NF-1   Sp1   p300   STAT3   Nkx2-5   
         Other transcription factors

SwitchGear Promoter luciferase reporter plasmidNFASC promoter sequence
   Search SABiosciences Chromatin IP Primers for NFASC

Epigenetics:
QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NFASC


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 1q32.1   Ensembl cytogenetic band:  1q32.1   HGNC cytogenetic band: 1q32.1

NFASC Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NFASC gene location

GeneLoc information about chromosome 1         GeneLoc Exon Structure

GeneLoc location for GC01P204797:  view genomic region     (about GC identifiers)

Start:
204,797,779 bp from pter      End:
204,991,950 bp from pter
Size:
194,172 bases      Orientation:
plus strand

(According to 1UniProtKB, HORDE, neXtProt, Ensembl, and/or Reactome, Modification sites according to 2PhosphoSitePlus, Specific Peptides from DME, Protein expression images according to data from SPIRE MOPED and PaxDb, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, and/or Uscn,
Biochemical Assays by EMD Millipore, R&D Systems, OriGene, GenScript, Cell Signaling Technology, Enzo Life Sciences, and/or Uscn, Ontologies according to Gene Ontology Consortium 01 Mar 2013 and Entrez Gene, Antibodies by EMD Millipore, R&D Systems, GenScript, Cell Signaling Technology, OriGene, Novus Biologicals, Thermo Fisher Scientific, Abcam, and/or Uscn)
About This Section

UniProtKB/Swiss-Prot: NFASC_HUMAN, O94856 (See protein sequence)
Recommended Name: Neurofascin precursor  
Size: 1347 amino acids; 150027 Da
Subunit: Horseshoe-shaped homodimer. Probable constituent of a neurofascin/NRCAM/ankyrin-G complex. Associates with the
sodium channel beta-1 (SCN1B) and beta-3 (SCN3B) subunits. Interacts with GLDN/gliomedin (By similarity)
Subcellular location: Cell membrane; Single-pass type I membrane protein
Sequence caution: Sequence=BAA34476.3; Type=Erroneous initiation; Sequence=BAB55195.1; Type=Erroneous initiation;
Sequence=BAC87577.1; Type=Erroneous initiation;
2 PDB 3D structures from and Proteopedia for NFASC:
3P3Y (3D)        3P40 (3D)    
Secondary accessions: B2RNN8 B3KQZ1 B5MDP6 B5MDR6 B7ZMD8 Q149P5 Q5T2F0 Q5T2F1 Q5T2F2 Q5T2F3 Q5T2F4
Q5T2F5 Q5T2F6 Q5T2F7 Q5T2F9 Q5T2G0 Q5W9F8 Q68DH3 Q6ZQV6 Q7Z3K1 Q96HT1 Q96K50
Alternative splicing: 13 isoforms:  O94856-1   O94856-2   O94856-3   O94856-4   O94856-5   O94856-6   O94856-7   O94856-8   
O94856-9   O94856-10   O94856-11   O94856-12   O94856-13   (No experimental confirmation available)

Explore the universe of human proteins at neXtProt for NFASC: NX_O94856

Post-translational modifications:

  • View modification sites using PhosphoSitePlus2
  • View neXtProt modification sites for NX_O94856

  • NFASC Protein expression data from MOPED and PaxDb:    About this image 
    Estimated protein expression log10 (pmol).

    REFSEQ proteins (6 alternative transcripts): 
    NP_001005388.2  NP_001005389.2  NP_001153803.1  NP_001153804.1  NP_001153805.1  NP_055905.2  

    ENSEMBL proteins: 
     ENSP00000412161   ENSP00000384875   ENSP00000385676   ENSP00000385637   ENSP00000427586  
     ENSP00000384061   ENSP00000425908   ENSP00000422524   ENSP00000415031   ENSP00000356141  
     ENSP00000395664   ENSP00000393290   ENSP00000416891   ENSP00000356140   ENSP00000356139  
     ENSP00000356138   ENSP00000342128   ENSP00000344786   ENSP00000343509   ENSP00000438614  
     ENSP00000353154   ENSP00000356137  
    Reactome Protein details: O94856
    Human Recombinant Protein Products: 
    Browse Purified and Recombinant Proteins at EMD Millipore
    Browse R&D Systems for human recombinant proteins
    Browse recombinant and purified proteins available from Enzo Life Sciences
    OriGene Purified Protein: NFASC
    Browse OriGene Protein Over-expression Lysates
    OriGene Custom Protein Services for NFASC 
    GenScript Custom Purified and Recombinant Proteins Services for NFASC
    Novus Biologicals NFASC Protein
    Browse Sino Biological Recombinant Proteins
    Browse ProSpec Recombinant Proteins
    Uscn Proteins for NFASC

    Gene Ontology (GO): 5/8 cellular component terms (GO ID links to tree view) (see all 8):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0005622intracellular ISS--
    GO:0005886plasma membrane TAS--
    GO:0016021integral to membrane IEA--
    GO:0030424axon ----
    GO:0033010paranodal junction IEA--


    NFASC for ontologies           About GeneDecksing



    NFASC Antibody Products: 
    EMD Millipore Mono- and Polyclonal Antibodies for the study of NFASC
    R&D Systems Antibodies for NFASC (Neurofascin)
    Browse OriGene Antibodies
    OriGene Custom Antibody Services for NFASC 
    GenScript Superior Antibodies for NFASC
    Novus Biologicals NFASC Antibodies
    Search for Antibodies for NFASC at Abcam  
    Uscn Antibodies for NFASC
    Search ThermoFisher Antibodies for NFASC

    Assay Products for NFASC: 
    Browse Kits and Assays available from EMD Millipore
    OriGene Custom Immunoassay Development
    Browse OriGene Fluorogenic Cell Assay Kits
    Browse R&D Systems for biochemical assays
    GenScript Custom Assay Services for NFASC
    Browse Enzo Life Sciences for kits & assays
    Uscn ELISAs and CLIAs for NFASC


    (According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
    About This Section

    NFASC for domains           About GeneDecksing

    5/8 InterPro domains/families (see all 8):
     IPR003598 Ig_sub2
     IPR007110 Ig-like_dom
     IPR003599 Ig_sub
     IPR003961 Fibronectin_type3
     IPR013098 Ig_I-set

    Graphical View of Domain Structure for InterPro Entry O94856

    ProtoNet protein and cluster: O94856

    UniProtKB/Swiss-Prot: NFASC_HUMAN, O94856
    Domain: Homophilic adhesion is primarily mediated by the interaction of the second Ig-like domains
    Similarity: Belongs to the immunoglobulin superfamily. L1/neurofascin/NgCAM family
    Similarity: Contains 5 fibronectin type-III domains
    Similarity: Contains 6 Ig-like C2-type (immunoglobulin-like) domains


    (According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013,
    bound targets from SABiosciences, miRNA Gene Targets from miRTarBase shRNA from OriGene, RNAi from EMD Millipore, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, SwitchGear Genomics, GenScript, Sino Biological, DNA2.0, and Vector BioLabs, Cell Lines from GenScript, LifeMap BioReagents, In Situ Hybridization Assays from Advanced Cell Diagnostics, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene.)
    About This Section

    Function Summary:

         UniProtKB/Swiss-Prot: NFASC_HUMAN, O94856
    Function: Cell adhesion, ankyrin-binding protein which may be involved in neurite extension, axonal guidance,
    synaptogenesis, myelination and neuron-glial cell interactions (By similarity)

    miRNA
    Products:
        
    OriGene 3'-UTR Clone (see all 6): NFASC
    Browse MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NFASC
    8/94 QIAGEN miScript miRNA Assays for microRNAs that regulate NFASC (see all 94):
    hsa-miR-607 hsa-miR-300 hsa-miR-1914* hsa-miR-146a hsa-miR-128 hsa-miR-200a hsa-miR-4267 hsa-miR-3613-3p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
        
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NFASC (see all 7)
    OriGene siRNA: NFASC
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NFASC

    Gene Editing
    Products:
    DNA2.0 Custom Protein Engineering Service for NFASC

    Clone
    Products:
         
    Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC (see all 11)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC (see all 6)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 6): NFASC (NM_001005388)
    Browse Sino Biological Human cDNA Clones
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for NFASC
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NFASC 

    Cell Line
    Products:
         
    GenScript Custom overexpressing Cell Line Services for NFASC
    Search LifeMap BioReagents cell lines for NFASC

    In Situ Assay
    Products:
       

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NFASC

    Animal Models:
         Mouse knock-out Nfasctm1.1Brp for NFASC
         5 MGI mutant phenotypes (inferred from 5 alleles(MGI details for Nfasc):
     behavior/neurological  growth/size  limbs/digits/tail  mortality/aging  nervous system 

    NFASC for phenotypes           About GeneDecksing


    (Pathways according to EMD Millipore, R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to SABiosciences, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Mar 2013 via Entrez Gene).
    About This Section

    Unified GeneCards pathways  About this table 
    See pathways by source

    Super-pathwaycontained gene-specific pathways
    1Axon guidance
    Axon guidance1.00
    L1CAM interactions0.39
    Developmental Biology0.69
    2Neurofascin interactions
    Neurofascin interactions1.00
    3Interaction between L1 and Ankyrins
    Interaction between L1 and Ankyrins1.00
    4Cell adhesion molecules (CAMs)
    Cell adhesion molecules (CAMs)1.00

    Pathway sources
    See GeneCards unified pathways
    Show all pathways


    5        Reactome Pathways for NFASC
        L1CAM interactions
    Developmental Biology
    Interaction between L1 and Ankyrins
    Axon guidance
    Neurofascin interactions


    1         Kegg Pathway  (Kegg details for NFASC):
        Cell adhesion molecules (CAMs)


    NFASC for pathways           About GeneDecksing

    Interactions:

        SABiosciences Gene Network CentralTM Interacting Genes and Proteins Network for NFASC

    STRING Interaction Network Preview (showing 5 interactants - click image to see 25)

    5/35 Interacting proteins for NFASC (O948563 ENSP000003531544) via UniProtKB, MINT, STRING, and/or I2D (see all 35)
    InteractantInteraction Details
    GeneCardExternal ID(s)
    SDCBPO005603, ENSP000002601304I2D: score=2 STRING: ENSP00000260130
    ABL1P005193, ENSP000003614234I2D: score=1 STRING: ENSP00000361423
    ANK1P161573, ENSP000002657094I2D: score=1 STRING: ENSP00000265709
    CRKP461083, ENSP000003005744I2D: score=1 STRING: ENSP00000300574
    DCXO436023, ENSP000003376974I2D: score=1 STRING: ENSP00000337697
    About this table

    Gene Ontology (GO): 5/10 biological process terms (GO ID links to tree view) (see all 10):    About this table

    GO IDQualified GO termEvidencePubMed IDs
    GO:0002175protein localization to paranode region of axon IEA--
    GO:0007155cell adhesion IEA--
    GO:0007411axon guidance TAS--
    GO:0007422peripheral nervous system development ISS--
    GO:0019226transmission of nerve impulse ----


    NFASC for ontologies           About GeneDecksing



    (Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience HMDB, BitterDB, and/or Novoseek, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB, with drugs/clinical trials/news search links to CenterWatch)
    About This Section

    NFASC for compounds           About GeneDecksing

    Browse Small Molecules at EMD Millipore
    Browse drugs & compounds from Enzo Life Sciences

    Browse Tocris compounds for NFASC

    1 HMDB Compound for NFASC    About this table
    CompoundSynonyms CAS #PubMed Ids
    SodiumSodium (see all 2)7440-23-5--
    2 Novoseek chemical compound relationships for NFASC gene    About this table
    Compound   -log (P-Val)   Hits   PubMed IDs for Articles with Shared Sentences (# sentences)
    sodium 36.5 11 15797713 (3), 11470829 (2), 10586239 (1), 11728309 (1) (see all 7)
    tyrosine 0 4 9371782 (2)

    Search CenterWatch for drugs/clinical trials and news about NFASC 

    (Secondary structures according to fRNAdb,
    GenBank/EMBL/DDBJ Accessions according to
    Unigene (Build 235 Homo sapiens; Mar 10 2013) or GenBank,
    RefSeq according to Entrez Gene,
    DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
    exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
    RNAi Products from EMD Millipore,
    siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN,
    Tagged/untagged cDNA clones from OriGene, SwitchGear Genomics, GenScript, DNA2.0, Vector BioLabs, Primers from OriGene, SABiosciences, and/or QIAGEN )
    About This Section

    REFSEQ mRNAs for NFASC gene (7 alternative transcripts): 
    NM_001005388.2  NM_001005389.1  NM_001160331.1  NM_001160332.1  NM_001160333.1  NM_015090.3  NM_001005387.1  

    Unigene Cluster for NFASC:

    Neurofascin
    Hs.13349  [show with all ESTs]
    Unigene Representative Sequence: NM_001005388
    18/32 Ensembl transcripts including schematic representations, and UCSC links where relevant (see all 32):
    ENST00000404977 ENST00000446412 ENST00000403080(uc001hbh.3 uc010pqz.2)
    ENST00000493914 ENST00000404076 ENST00000514644(uc009xbg.1) ENST00000401399(uc001hbl.2 uc009xbh.2)
    ENST00000505079 ENST00000404907 ENST00000513543 ENST00000504476 ENST00000430393
    ENST00000367173 ENST00000504149 ENST00000512826(uc001hbk.1) ENST00000471392
    ENST00000425360 ENST00000468328

    miRNA
    Products:
         
    OriGene 3'-UTR Clone (see all 6): NFASC
    Browse OriGene MicroRNA Expression Plasmids
    QIAGEN Custom miScript Target Protector blocks miRNA-binding site of human, mouse, rat NFASC
    8/94 QIAGEN miScript miRNA Assays for microRNAs that regulate NFASC (see all 94):
    hsa-miR-607 hsa-miR-300 hsa-miR-1914* hsa-miR-146a hsa-miR-128 hsa-miR-200a hsa-miR-4267 hsa-miR-3613-3p
    Browse SwitchGear 3'UTR luciferase reporter plasmids
    Inhib. RNA
    Products:
         
    Browse for Gene Knock-down Tools from EMD Millipore
    OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NFASC (see all 7)
    OriGene siRNA: NFASC
    QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NFASC
    Clone
    Products:
         
    OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC (see all 11)
    OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC (see all 6)
    OriGene custom cloning services – gene synthesis, subcloning, mutagenesis, variant library, vector shuttling 
    GenScript: all cDNA clones in your preferred vector (see all 6): NFASC (NM_001005388)
    DNA2.0 Custom Codon Optimized Gene Synthesis Service for NFASC
    Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NFASC 
    Primer
    Products:
        
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NFASC
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NFASC
      QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NFASC
      QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NFASC

    Additional cDNA sequence: 

    AB018299.3 AB177861.1 AF054995.1 AK027553.1 AK090639.1 AK091338.1 AK097802.1 AK127205.1 
    AK127424.1 AK128699.1 AK172728.1 AK295291.1 AK299262.1 AK308686.1 BC008124.2 BC033367.1 
    BC035389.1 BC040674.1 BC117674.2 BC137013.1 BC144454.1 BX537841.1 BX641047.1 BX641048.1 
    BX647464.1 CR749402.1 

    21 DOTS entries:

    DT.404400  DT.314541  DT.97836305  DT.110862  DT.92066284  DT.97838242  DT.101982756  DT.110863 
    DT.91890351  DT.100017176  DT.100747099  DT.70103030  DT.75169797  DT.95333069  DT.95176130  DT.91981426 
    DT.121330329  DT.121330381  DT.75143885  DT.100714791  DT.92060805 

    24/188 AceView cDNA sequences (see all 188):

    CA843898 AK090639 AA670300 BQ188947 BF431751 CA843241 AL699776 AI393932 
    Z41725 BF433773 CK300307 F10987 AW026442 AK128699 BM718570 CF887580 
    H17930 BM671662 AK127424 BX645661 AB018299 BM726563 CA843141 BC033367 

    GeneLoc Exon Structure

    5/11 Alternative Splicing Database (ASD) splice patterns (SP) for NFASC (see all 11)    About this scheme

    ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6a · 6b ^ 7 ^ 8 ^ 9a · 9b ^ 10 ^ 11 ^ 12 ^ 13 ^ 14 ^ 15a · 15b ^ 16 ^ 17 ^ 18 ^ 19a · 19b · 19c · 19d ^ 20a ·
    SP1:        -                                                                                               -                                                   
    SP2:                                            -                                                           -                                                   
    SP3:                                            -                                                                                                               
    SP4:                                                                                                                                                            
    SP5:                                                                                                                                                        -   

    ExUns: 20b ^ 21 ^ 22a · 22b ^ 23a · 23b ^ 24a · 24b ^ 25 ^ 26 ^ 27 ^ 28 ^ 29a · 29b · 29c · 29d
    SP1:  -                             -     -     -     -     -                                       
    SP2:  -                                                                                             
    SP3:                                                                                                
    SP4:                                -     -     -     -                                             
    SP5:  -     -                       -     -     -     -     -                                       


    ECgene alternative splicing isoforms for NFASC

    (RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, plus additional links to Genevestigator, and/or SOURCE, and/or BioGPS, and/or UniProtKB,
    PCR Arrays from SABiosciences, Primers from OriGene, SABiosciences, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
    About This Section

    NFASC expression in normal human tissues (normalized intensities)
    See probesets specificity/sensitivity at GeneAnnot
    About this imageBioGPS
    CGAP TAG: AGCAATGAAA

    Microarray
    RNAseq (Illumina Body Map)
    (100×FPKM)½
    SAGE (Serial Analysis of Gene Expression)

    About this image
    See NFASC Protein Expression from SPIRE MOPED and PaxDB
    Genevestigator expression for NFASC

    SOURCE GeneReport for Unigene cluster: Hs.13349
        SABiosciences Expression via Pathway-Focused PCR Array including NFASC: 
              Parkinson's Disease in human mouse rat

    Primer
    Products:
    OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NFASC
    Browse OriGene validated miRNA SYBR primer pairs
    SABiosciences RT2 qPCR Primer Assay in human, mouse, rat NFASC
    QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NFASC
    QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NFASC
    In Situ
    Assay Products:
     

     
    Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NFASC

    (Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
    About This Section

    This gene was present in the common ancestor of animals.

    Orthologs for NFASC gene from 5/19 species (see all 19)    About this table
    Organism Taxonomic
    classification
    Gene Description Human
    Similarity
    Orthology
    Type
    Details
    chicken
    (Gallus gallus)
    Aves NFASC1 neurofascin 74.56(n)
    76.82(a)
      419824  NM_001160322.1  NP_001153794.1 
    lizard
    (Anolis carolinensis)
    Reptilia NFASC6
    --
    67(a)
    1 ↔ 1
    4(116474297-116587959)
    zebrafish
    (Danio rerio)
    Actinopterygii nfasca6
    CU234171.16
    --
    55(a)
    46(a)
    1 ↔ many
    1 ↔ many
    11(24630839-24802491)
    23(18069975-18088703)
    fruit fly
    (Drosophila melanogaster)
    Insecta Nrg3 neuronal cell adhesion cell adhesion
    molecule
    32(a)     --
    worm
    (Caenorhabditis elegans)
    Secernentea lad-13 neural adhesion protein 26(a)   IV(8062655-8082948)   --


    ENSEMBL Gene Tree for NFASC (if available)
    TreeFam Gene Tree for NFASC (if available) 

    (Paralogs according to 1HomoloGene,
    2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
    About This Section
    Paralogs for NFASC gene
    CHL12  CNTN22  DSCAM2  CNTN62  CNTN52  CNTN42  NRCAM2  CNTN32  
    SDK22  SDK12  DSCAML12  L1CAM2  CNTN12  
    10 SIMAP similar genes for NFASC using alignment to 12 protein entries:     NFASC_HUMAN (see all proteins):
    NRCAM    L1CAM    CHL1    MUSK    FGFR1    FGFR3
    MDGA1    HMCN2    CNTN1    CNTN3

    NFASC for paralogs           About GeneDecksing



    (SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD) and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers from QIAGEN, Cancer Mutation PCR Arrays and Assays and Copy Number PCR Arrays from SABiosciences)
    About This Section

    10/3697 NCBI SNPs in NFASC are shown (see all 3697    About this table
    Genomic DataTranscription Related DataAllele Frequencies
    SNP IDValidClinical
    significance
    Chr 1 posSequence#AA
    Chg
    TypeMore#Allele
    freq
    PopTotal
    sample
    More
    ----------
    rs786331171,2
    C,F,--175961207(+) TTTCAT/CTGGGA 5 -- us2k11Minor allele frequency- C:0.04WA 118
    rs618194111,2
    --175961346(+) GTGCAA/TACCCA 5 -- us2k12Minor allele frequency- T:0.05NA WA 120
    rs788733731,2
    --175961651(+) GCCATG/AAAACT 5 -- us2k11Minor allele frequency- A:0.01NA 120
    rs730756401,2
    C,--175962005(+) ATAGCA/GAAGTA 5 -- us2k12Minor allele frequency- G:0.08WA 120
    rs342898721,2
    C,F,--175962174(+) GCTGCA/CGGGGA 5 -- us2k14Minor allele frequency- C:0.03NA 126
    rs752332451,2
    F,--175963567(+) TATTCT/CCTTCC 5 -- int11Minor allele frequency- C:0.06WA 118
    rs1124793211,2
    --175964565(+) CCACAG/AGGCTT 5 -- int12Minor allele frequency- A:0.06CSA WA 120
    rs75300931,2
    C,F,--175964878(+) CACTTC/TGGAGG 5 -- int11Minor allele frequency- T:0.04WA 118
    rs764472811,2
    --175965105(+) AATGGC/AAGCCC 5 -- int12Minor allele frequency- A:0.06CSA WA 120
    rs788520121,2
    C,--175965181(+) AGACAG/CACTCT 5 -- int12Minor allele frequency- C:0.03NA 122

    HapMap Linkage Disequilibrium report for NFASC (204797779 - 204991950 bp)
    Structural Variations (Copy Number Variations, Insertions/Deletions, Inversions)
          Database of Genomic Variants (DGV) variations for NFASC: --

    SABiosciences Cancer Mutation PCR Assays
    QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NFASC
    DNA2.0 Custom Variant and Variant Library Synthesis for NFASC

    (in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
    About This Section

    NFASC for disorders           About GeneDecksing

    OMIM gene information: 609145    OMIM disorders: --

    12 diseases for NFASC:    About MalaCards
    maturity-onset diabetes of the young    dengue hemorrhagic fever    hemorrhagic fever    masa syndrome
    crash syndrome    lissencephaly    hydrocephalus    multiple sclerosis
    parkinson's disease    hepatocellular carcinoma    carcinoma    neuronitis

    2 diseases from the University of Copenhagen DISEASES database for NFASC:
    Hyperkalemic periodic paralysis     Demyelinating polyneuropathy
    Human Genome Epidemiology (HuGE) Navigator: NFASC (2 documents)

    Export disorders for NFASC gene to outside databases

    (in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
    About This Section

    PubMed articles for NFASC gene, integrated from 9 sources (see all 80):
    (articles sorted by number of sources associating them with NFASC)
        Utopia: connect your pdf to the dynamic
    world of online information

    1. Homophilic adhesion mechanism of neurofascin, a membe r of the L1 family of neural cell adhesion molecules. (PubMed id 21047790)1, 2 Liu H....He X. (2011)
    2. The DNA sequence and biological annotation of human chromosome 1. (PubMed id 16710414)1, 2 Gregory S.G.... Bentley D.R. (2006)
    3. Alternative splice variants encoding unstable protein domains exist in the human brain. (PubMed id 15491607)1, 2 Homma K.... Nishikawa K. (2004)
    4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)1, 2 Ota T.... Sugano S. (2004)
    5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)1, 2 Gerhard D.S....Malek J. (2004)
    6. Construction of expression-ready cDNA clones for KIAA genes: manual curation of 330 KIAA cDNA clones. (PubMed id 12168954)1, 2 Nakajima D.... Nagase T. (2002)
    7. Prediction of the coding sequences of unidentified human genes. XI. The complete sequences of 100 new cDNA clones from brain which code for large proteins in vitro. (PubMed id 9872452)1, 2 Nagase T.... Ohara O. (1998)
    8. Genes for the neuronal immunoglobulin domain cell adhesion molecules neurofascin and Nr-CAM map to mouse chromosomes 1 and 12 and homologous human chromosomes. (PubMed id 8672144)1, 3 Burmeister M....Bennett V. (1996)
    9. Structure of the axonal surface recognition molecule neurofascin and its relationship to a neural subgroup of the immunoglobulin superfamily. (PubMed id 1377696)1, 3 Volkmer H....Rathjen F.G. (1992)
    10. Palmitoylation of neurofascin at a site in the membrane-spanning domain highly conserved among the L1 family of cell adhesion molecules. (PubMed id 9572267)1, 9 Ren Q. and Bennett V. (1998)

    (in PubMed, OMIM, and NCBI Bookshelf)
    About This Section
     ANDOR
    Aliases
    Free Text  

      Query String
    PubMed
    OMIM
    NCBI Bookshelf
      (Note: In FireFox, select the above section and copy using Ctrl-C)

    (According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
    About This Section
    Entrez Gene: 23114 HGNC: 29866 AceView: NFASC Ensembl:ENSG00000163531 euGenes: HUgn23114
    ECgene: NFASC Kegg: 23114 H-InvDB: NFASC

    (According to HUGE)
    About This Section
    HUGE: KIAA0756

    (According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
    Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
    About This Section
    NameDescription
    PharmGKB entry for NFASC Pharmacogenomics, SNPs, Pathways

    (Patent information from GeneIP,
    Licensable technologies from WIS Yeda, Salk, Tufts,
    IP news from LifeMap Sciences, Inc.)
    About This Section
    Patent Information for NFASC gene:
    Search GeneIP for patents involving NFASC

    GeneCards and IP:
    Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



    (Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, SABiosciences, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Uscn, Thermo Fisher Scientific, Gene Editing from DNA2.0, Clones from EMD Millipore, OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Cell lines from GenScript and LifeMap BioReagents, PCR Arrays from SABiosciences, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, and/or Enzo Life Sciences),
    In Situ Hybridization Assays from
    Advanced Cell Diagnostics
    About This Section

     Browse Small Molecules at EMD Millipore
     Browse Purified and Recombinant Proteins at EMD Millipore
     Browse for Gene Knock-down Tools from EMD Millipore
     Browse Kits and Assays available from EMD Millipore
     Browse Clones for the Expression of Recombinant Proteins Available from EMD Millipore
     EMD Millipore Mono- and Polyclonal Antibodies for the study of NFASC
     
     EMD Millipore Custom Antibody & Bulk Services
     EMD Millipore Preclinical / Clinical Development Services
     EMD Millipore Immunoassay Services
     EMD Millipore Target Screening & Profiling Services

      
     Antibodies for NFASC (Neurofascin)   Browse Cell Culture Products  
     Browse ELISAs   Browse Flow Cytometry Kits  
     Browse Primer Pairs   Browse Kinase Activity Assays/Reagents  
     Browse ELISpot Kits/Development Modules   Browse TFB/Immunoprecipitation Assays  
     Browse Apoptosis Detection Kits/Reagents   Browse Ubiquitin Proteasome Pathway (UPP) Assay Kits/Reagents  
     Browse DNA Damage/Repair Kits/Reagents   Browse Multiplex/Array Assay Kits/Reagents  
     Browse Cell Selection/Detection Kits/Reagents   Browse Secondary Antibodies/Controls/Staining Reagents  
     Browse Phosphatase Activity Assays/Reagents   Browse Recombinant/Natural Proteins  
     Browse OriGene Antibodies   Browse OriGene shRNA RFPs  
     OriGene 29mer shRNA kits in GFP-retroviral vector in human, mouse, rat for NFASC   OriGene genome-wide validated SYBR primer pairs in human, mouse, rat for NFASC  
     Browse OriGene Protein Over-expression Lysates   Browse OriGene Fluorogenic Cell Assay Kits  
     OriGene siRNA for NFASC   OriGene 3'-UTR Clone for NFASC  
     OriGene untagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC   OriGene Myc/DDK tagged cDNA clones in CMV expression vector in human, mouse, rat for NFASC  
     Browse OriGene GFP tagged cDNA clones in CMV expression vector   Browse OriGene MicroRNA Expression Plasmids  
     Browse OriGene basic RS shRNAs   Browse OriGene validated miRNA SYBR primer pairs  
     OriGene Purified Protein for NFASC   OriGene custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling  
     OriGene Custom Antibody Services for NFASC   OriGene Custom Protein Services for NFASC  
     OriGene Custom Immunoassay Development  

     
     
     QIAGEN Custom miScript Target Protector blocks miRNA-binding site of in human, mouse, rat NFASC
     QIAGEN SeqTarget long-range PCR primers in human, mouse, rat for resequencing NFASC
     QIAGEN PyroMark CpG Assay predesigned Pyrosequencing DNA Methylation assays in human, mouse, rat NFASC
     QIAGEN FlexiTube/FlexiPlate siRNA for gene silencing in human, mouse, rat NFASC
     QIAGEN QuantiFast Probe-based Assays in human, mouse, rat NFASC
     QIAGEN QuantiTect SYBR Green Assays in human, mouse, rat NFASC
     GenScript Custom Purified and Recombinant Proteins Services for NFASC GenScript cDNA clones with any tag delivered in your preferred vector for NFASC
     GenScript Custom Assay Services for NFASC GenScript Superior Antibodies for NFASC
     GenScript Custom overexpressing Cell Line Services for NFASC CloneReady with Over 120,000 Genes
     Gene Synthesis: Any Gene in Any Vector Vector-based siRNA and miRNA, Ready for Transfection
     Gene Mutant Library, Variants up to 10^11 Plasmid Preparation
     Custom Peptide Services
     Search for Antibodies & Assays

     Regulatory tfbs in NFASC promoter
     Search Chromatin IP Primers for NFASC
     RT2 qPCR Primer Assay in human, mouse, rat NFASC
     GNC Network for NFASC
     SABiosciences PCR Arrays including human, mouse, rat NFASC
     Search Tocris compounds for NFASC
     Browse Sino Biological Proteins and Antibodies
     Browse Sino Biological cDNA Clones
     Antibodies/Proteins Production Services
     Rabbit Monoclonal Antibody Platform
     Bulk Purchasing
     Search www.enzolifesciences.com for proteins, assays, substrates, inhibitors & antibodies
     Novus Tissue Slides
     NFASC antibodies
     NFASC proteins
     Search for Antibodies for NFASC at Abcam
     See all of Abcam's Antibodies, Kits and Proteins for NFASC
     Custom Antibody / Protein Production Service
     Bulk Purchasing
     Advantages of Rabbit Monoclonal antibodies
     Abcam protocols and scientific support
     Browse ProSpec Recombinant Proteins




     NFASC Proteins, Antibodies, CLIAs, and ELISAs
     Search LifeMap BioReagents cell lines for NFASC
     Gene Synthesis
     Protein Engineering
     Variant Library Synthesis
     Codon Optimization
     Protein Production and Purification
     Advanced Cell Diagnostics RNAscope RNA in situ hybridization assays for NFASC
     Browse SwitchGear 3'UTR luciferase reporter plasmids for NFASC
     SwitchGear Promoter luciferase reporter plasmids for NFASC
     Search ThermoFisher Antibodies for NFASC
     Vector BioLabs ready-to-use adenovirus/AAV for human, mouse, rat NFASC
           
    GeneCards Homepage - Last full update: 18 Mar 2013 - Incrementals: 21 Mar 2013 , 15 Apr 2013 , 26 Apr 2013

    View Random Gene

    Category
    VWF
    (GIFTS: 73)
    von Willebrand factor
    GIFtS Group
    The GeneCards human gene database gene index: 1 3 5 6 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z 


    Developed at the Crown Human Genome Center, Department of Molecular Genetics, the Weizmann Institute of Science

    Hot genes      Disease genes      NFASC gene at Home site.
    hostname: 356977-web1.xennexinc.com index build: 100 solr: 1.4