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Aliases for NEXN-AS1 Gene

Subcategory (RNA class) for NEXN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NEXN-AS1 Gene

  • NEXN Antisense RNA 1 2 3 4 5
  • NEXN Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1orf118 3 4
  • Chromosome 1 Open Reading Frame 118 2

External Ids for NEXN-AS1 Gene

Previous HGNC Symbols for NEXN-AS1 Gene

  • C1orf118

Previous GeneCards Identifiers for NEXN-AS1 Gene

  • GC01M078348

Summaries for NEXN-AS1 Gene

GeneCards Summary for NEXN-AS1 Gene

NEXN-AS1 (NEXN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEXN-AS1 Gene

Genomics for NEXN-AS1 Gene

Regulatory Elements for NEXN-AS1 Gene

Enhancers for NEXN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01G077886 1.2 ENCODE dbSUPER 5.9 +0.1 140 5.0 HDGF DMAP1 ZNF2 ZNF121 GLIS2 FOS YY2 REST ZNF518A MEF2D GIPC2 FUBP1 NEXN-AS1 NEXN IFI44
GH01G077900 0.8 ENCODE dbSUPER 0.4 -11.3 -11332 0.2 CTCF ZNF654 SMC3 REST RAD21 RFX5 ACTG1P21 MIGA1 RNA5SP21 ZZZ3 NEXN-AS1 DNAJB4
GH01G077975 1.4 ENCODE dbSUPER 0.2 -88.7 -88743 5.5 HDGF PKNOX1 FOXA2 ARNT CREB3L1 WRNIP1 SIN3A FEZF1 DMAP1 ZNF2 RPL17P6 GIPC2 NEXN DNAJB4 NEXN-AS1
GH01G077904 0.5 dbSUPER 0.4 -15.2 -15233 1.2 ZNF121 BHLHE40 FOS NFE2L2 ACTG1P21 MIGA1 RNA5SP21 ZZZ3 GIPC2 NEXN NEXN-AS1 DNAJB4
GH01G077949 0.8 ENCODE dbSUPER 0.2 -59.7 -59712 0.2 PAF1 CTCF SMC3 EBF1 RAD21 DNAJB4 NEXN-AS1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NEXN-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NEXN-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000008754 339 2400 HDGF FEZF1 DMAP1 ZNF2 ZNF121 GLIS2 FOS YY2 REST ZNF518A

Genomic Location for NEXN-AS1 Gene

Chromosome:
1
Start:
77,881,348 bp from pter
End:
77,889,539 bp from pter
Size:
8,192 bases
Orientation:
Minus strand

Genomic View for NEXN-AS1 Gene

Genes around NEXN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEXN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEXN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEXN-AS1 Gene

Proteins for NEXN-AS1 Gene

  • Protein details for NEXN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBZ9-NEAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein NEXN-AS1
    Protein Accession:
    Q8NBZ9

    Protein attributes for NEXN-AS1 Gene

    Size:
    246 amino acids
    Molecular mass:
    25156 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NEXN-AS1 Gene

Post-translational modifications for NEXN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEXN-AS1 Gene

Domains & Families for NEXN-AS1 Gene

Protein Domains for NEXN-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NEXN-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEXN-AS1 Gene

Function for NEXN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEXN-AS1 Gene

Localization for NEXN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NEXN-AS1 Gene

Pathways & Interactions for NEXN-AS1 Gene

SuperPathways for NEXN-AS1 Gene

No Data Available

Interacting Proteins for NEXN-AS1 Gene

Gene Ontology (GO) - Biological Process for NEXN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NEXN-AS1 Gene

Drugs & Compounds for NEXN-AS1 Gene

No Compound Related Data Available

Transcripts for NEXN-AS1 Gene

mRNA/cDNA for NEXN-AS1 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEXN-AS1 Gene

NEXN antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEXN-AS1 Gene

No ASD Table

Relevant External Links for NEXN-AS1 Gene

GeneLoc Exon Structure for
NEXN-AS1
ECgene alternative splicing isoforms for
NEXN-AS1

Expression for NEXN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NEXN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NEXN-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.2) and Heart - Left Ventricle (x5.6).

Protein differential expression in normal tissues from HIPED for NEXN-AS1 Gene

This gene is overexpressed in CD4 Tcells (67.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NEXN-AS1 Gene



Protein tissue co-expression partners for NEXN-AS1 Gene

SOURCE GeneReport for Unigene cluster for NEXN-AS1 Gene:

Hs.632414
genes like me logo Genes that share expression patterns with NEXN-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NEXN-AS1 Gene

Orthologs for NEXN-AS1 Gene

Evolution for NEXN-AS1 Gene

ENSEMBL:
Gene Tree for NEXN-AS1 (if available)
TreeFam:
Gene Tree for NEXN-AS1 (if available)

No data available for Orthologs for NEXN-AS1 Gene

Paralogs for NEXN-AS1 Gene

No data available for Paralogs for NEXN-AS1 Gene

Variants for NEXN-AS1 Gene

Sequence variations from dbSNP and Humsavar for NEXN-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs886046528 Uncertain significance 77,888,579(+) TTTTA(C/T)GGAAA nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886046529 Uncertain significance 77,888,582(+) TATGG(A/C)AACTT nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886046530 Uncertain significance 77,888,617(+) GCGGC(-/GGC)AGCGG nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886046531 Uncertain significance 77,888,618(+) GCGGC(A/G)GCGGC nc-transcript-variant, upstream-variant-2KB, utr-variant-5-prime
rs886046532 Uncertain significance 77,888,684(+) CCCCT(A/G)CCCAC nc-transcript-variant, utr-variant-5-prime

Structural Variations from Database of Genomic Variants (DGV) for NEXN-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2329300 CNV deletion 18987734
nsv1137774 CNV deletion 24896259

Relevant External Links for NEXN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NEXN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEXN-AS1 Gene

Disorders for NEXN-AS1 Gene

Relevant External Links for NEXN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NEXN-AS1

No disorders were found for NEXN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEXN-AS1 Gene

Publications for NEXN-AS1 Gene

  1. A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer. (PMID: 27713484) Yuan H. … Wei Q. (Sci Rep 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for NEXN-AS1 Gene

Sources for NEXN-AS1 Gene

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