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Aliases for NEXN-AS1 Gene

Subcategory (RNA class) for NEXN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NEXN-AS1 Gene

  • NEXN Antisense RNA 1 2 3 4 5
  • NEXN Antisense RNA 1 (Non-Protein Coding) 2 3
  • C1orf118 3 4
  • Chromosome 1 Open Reading Frame 118 2

External Ids for NEXN-AS1 Gene

Previous HGNC Symbols for NEXN-AS1 Gene

  • C1orf118

Previous GeneCards Identifiers for NEXN-AS1 Gene

  • GC01M078348

Summaries for NEXN-AS1 Gene

GeneCards Summary for NEXN-AS1 Gene

NEXN-AS1 (NEXN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEXN-AS1 Gene

Genomics for NEXN-AS1 Gene

Regulatory Elements for NEXN-AS1 Gene

Enhancers for NEXN-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F077886 1 ENCODE 5.9 +0.1 140 5.0 DMAP1 ZNF2 ZNF121 GLIS2 FOS YY2 REST ZNF518A MEF2D ZNF610 GIPC2 FUBP1 NEXN-AS1 NEXN IFI44
GH01F077900 0.6 ENCODE 0.4 -11.3 -11332 0.2 CTCF ZNF654 SMC3 REST RAD21 RFX5 ACTG1P21 MIGA1 RNA5SP21 ZZZ3 NEXN-AS1 DNAJB4
GH01F077975 1.1 ENCODE 0.2 -88.7 -88743 5.5 HDGF PKNOX1 CREB3L1 WRNIP1 SIN3A FEZF1 DMAP1 ZNF2 YY1 SLC30A9 RPL17P6 GIPC2 NEXN DNAJB4 NEXN-AS1
GH01F077949 0.6 ENCODE 0.2 -59.7 -59712 0.2 PAF1 CTCF SMC3 EBF1 RAD21 DNAJB4 NEXN-AS1
GH01F077920 0.3 FANTOM5 0.3 -31.1 -31101 0.0 RNU6-1102P LOC100422537 MIGA1 RNA5SP21 ACTG1P21 NEXN NEXN-AS1 DNAJB4
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NEXN-AS1 on UCSC Golden Path with GeneCards custom track

Promoters for NEXN-AS1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters
ENSR00000539330 -61 3601 FEZF1 DMAP1 ZNF2 ZNF121 GLIS2 FOS YY2 REST ZNF518A MEF2D

Genomic Location for NEXN-AS1 Gene

Chromosome:
1
Start:
77,881,348 bp from pter
End:
77,889,539 bp from pter
Size:
8,192 bases
Orientation:
Minus strand

Genomic View for NEXN-AS1 Gene

Genes around NEXN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEXN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEXN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEXN-AS1 Gene

Proteins for NEXN-AS1 Gene

  • Protein details for NEXN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8NBZ9-NEAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein NEXN-AS1
    Protein Accession:
    Q8NBZ9

    Protein attributes for NEXN-AS1 Gene

    Size:
    246 amino acids
    Molecular mass:
    25156 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NEXN-AS1 Gene

Post-translational modifications for NEXN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEXN-AS1 Gene

Domains & Families for NEXN-AS1 Gene

Protein Domains for NEXN-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NEXN-AS1: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEXN-AS1 Gene

Function for NEXN-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEXN-AS1 Gene

Localization for NEXN-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NEXN-AS1 Gene

Pathways & Interactions for NEXN-AS1 Gene

SuperPathways for NEXN-AS1 Gene

No Data Available

Interacting Proteins for NEXN-AS1 Gene

Gene Ontology (GO) - Biological Process for NEXN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NEXN-AS1 Gene

Transcripts for NEXN-AS1 Gene

mRNA/cDNA for NEXN-AS1 Gene

(2) REFSEQ mRNAs :
(4) Additional mRNA sequences :
(6) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEXN-AS1 Gene

NEXN antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEXN-AS1 Gene

No ASD Table

Relevant External Links for NEXN-AS1 Gene

GeneLoc Exon Structure for
NEXN-AS1
ECgene alternative splicing isoforms for
NEXN-AS1

Expression for NEXN-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NEXN-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NEXN-AS1 Gene

This gene is overexpressed in Muscle - Skeletal (x7.2) and Heart - Left Ventricle (x5.6).

Protein differential expression in normal tissues from HIPED for NEXN-AS1 Gene

This gene is overexpressed in CD4 Tcells (67.1).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NEXN-AS1 Gene



Protein tissue co-expression partners for NEXN-AS1 Gene

SOURCE GeneReport for Unigene cluster for NEXN-AS1 Gene:

Hs.632414
genes like me logo Genes that share expression patterns with NEXN-AS1: view

Primer Products

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery and mRNA Expression by UniProt/SwissProt for NEXN-AS1 Gene

Orthologs for NEXN-AS1 Gene

Evolution for NEXN-AS1 Gene

ENSEMBL:
Gene Tree for NEXN-AS1 (if available)
TreeFam:
Gene Tree for NEXN-AS1 (if available)

No data available for Orthologs for NEXN-AS1 Gene

Paralogs for NEXN-AS1 Gene

No data available for Paralogs for NEXN-AS1 Gene

Variants for NEXN-AS1 Gene

Sequence variations from dbSNP and Humsavar for NEXN-AS1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs587781100 Benign 77,888,754(+) GCTCC(C/T)GCAGG nc-transcript-variant, utr-variant-5-prime
rs111672371 -- 77,886,385(+) ATCTC(C/T)AAATA intron-variant
rs111688541 -- 77,889,430(+) TTACG(A/T)AGTTT intron-variant
rs111815109 -- 77,889,310(+) TTACT(-/C/CC)CCCCC intron-variant
rs112545421 -- 77,882,025(+) TACAA(C/T)AAATT intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NEXN-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1137774 CNV deletion 24896259
esv2329300 CNV deletion 18987734

Relevant External Links for NEXN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NEXN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEXN-AS1 Gene

Disorders for NEXN-AS1 Gene

Relevant External Links for NEXN-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NEXN-AS1

No disorders were found for NEXN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEXN-AS1 Gene

Publications for NEXN-AS1 Gene

  1. A Novel Genetic Variant in Long Non-coding RNA Gene NEXN-AS1 is Associated with Risk of Lung Cancer. (PMID: 27713484) Yuan H. … Wei Q. (Sci Rep 2016) 2 3 64
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 3 4 64

Products for NEXN-AS1 Gene

Sources for NEXN-AS1 Gene

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