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Aliases for NEURL3 Gene

Aliases for NEURL3 Gene

  • Neuralized E3 Ubiquitin Protein Ligase 3 2 3
  • Lung-Inducible Neuralized-Related C3CH4 RING Domain Protein 3 4
  • Neuralized-Like Protein 3 3 4
  • LINCR 3 4
  • Neuralized Homolog 3 (Drosophila) Pseudogene 2
  • E3 Ubiquitin-Protein Ligase NEURL3 3
  • Neuralized Homolog 3 Pseudogene 3
  • EC 6.3.2.- 4

External Ids for NEURL3 Gene

Summaries for NEURL3 Gene

GeneCards Summary for NEURL3 Gene

NEURL3 (Neuralized E3 Ubiquitin Protein Ligase 3) is a Protein Coding gene. GO annotations related to this gene include ligase activity.

UniProtKB/Swiss-Prot for NEURL3 Gene

  • E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal degradation (By similarity).

No data available for Entrez Gene Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEURL3 Gene

Genomics for NEURL3 Gene

Genomic Location for NEURL3 Gene

Start:
96,497,643 bp from pter
End:
96,508,109 bp from pter
Size:
10,467 bases
Orientation:
Minus strand

Genomic View for NEURL3 Gene

UCSC Golden Path with GeneCards custom track
Cytogenetic band:
Genomic Location for NEURL3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEURL3 Gene

Regulatory Elements for NEURL3 Gene

Proteins for NEURL3 Gene

  • Protein details for NEURL3 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96EH8-NEUL3_HUMAN
    Recommended name:
    E3 ubiquitin-protein ligase NEURL3
    Protein Accession:
    Q96EH8
    Secondary Accessions:

    Protein attributes for NEURL3 Gene

    Size:
    262 amino acids
    Molecular mass:
    28789 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NEURL3 Gene

Proteomics data for NEURL3 Gene at MOPED

Post-translational modifications for NEURL3 Gene

No Post-translational modifications

Other Protein References for NEURL3 Gene

No data available for DME Specific Peptides for NEURL3 Gene

Domains for NEURL3 Gene

Protein Domains for NEURL3 Gene

UniProtKB/Swiss-Prot:

NEUL3_HUMAN
Domain:
  • Contains 1 NHR (neuralized homology repeat) domain.:
    • Q96EH8
Similarity:
  • Contains 1 RING-type zinc finger.:
    • Q96EH8
genes like me logo Genes that share domains with NEURL3: view

No data available for Gene Families for NEURL3 Gene

Function for NEURL3 Gene

Molecular function for NEURL3 Gene

UniProtKB/Swiss-Prot Function: E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal degradation (By similarity).

Enzyme Numbers (IUBMB) for NEURL3 Gene

Gene Ontology (GO) - Molecular Function for NEURL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004842 ubiquitin-protein transferase activity IEA --
GO:0005515 protein binding --
GO:0008270 zinc ion binding IEA --
GO:0016874 ligase activity IEA --
GO:0046872 metal ion binding --
genes like me logo Genes that share ontologies with NEURL3: view

miRNA for NEURL3 Gene

miRTarBase miRNAs that target NEURL3

No data available for Phenotypes , Animal Models , Transcription Factor Targeting and HOMER Transcription for NEURL3 Gene

Localization for NEURL3 Gene

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NEURL3 Gene COMPARTMENTS Subcellular localization image for NEURL3 gene
Compartment Confidence
cytosol 3
extracellular 2
mitochondrion 1
nucleus 1

No data available for Gene Ontology (GO) - Cellular Components for NEURL3 Gene

Pathways for NEURL3 Gene

SuperPathways for NEURL3 Gene

No Data Available

UniProtKB/Swiss-Prot Q96EH8-NEUL3_HUMAN

  • Pathway: Protein modification; protein ubiquitination

Interacting Proteins for NEURL3 Gene

Gene Ontology (GO) - Biological Process for NEURL3 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0016567 protein ubiquitination IEA --
genes like me logo Genes that share ontologies with NEURL3: view

No data available for Pathways by source for NEURL3 Gene

Transcripts for NEURL3 Gene

Unigene Clusters for NEURL3 Gene

Neuralized homolog 3 (Drosophila) pseudogene:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEURL3 Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1:
SP2: - - -

Relevant External Links for NEURL3 Gene

GeneLoc Exon Structure for
NEURL3
ECgene alternative splicing isoforms for
NEURL3

Expression for NEURL3 Gene

mRNA expression in normal human tissues for NEURL3 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NEURL3 Gene

This gene is overexpressed in Pancreas (15.9), Kidney - Cortex (6.6), and Minor Salivary Gland (5.4).

Integrated Proteomics: protein expression from ProteomicsDB and MOPED for NEURL3 Gene

SOURCE GeneReport for Unigene cluster for NEURL3 Gene Hs.149219

genes like me logo Genes that share expressions with NEURL3: view

Orthologs for NEURL3 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NEURL3 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC470439 36
  • 99.24 (n)
  • 98.09 (a)
cow
(Bos Taurus)
Mammalia LOC511385 36
  • 82.11 (n)
  • 71.81 (a)
dog
(Canis familiaris)
Mammalia LOC102152163 36
  • 83.46 (n)
  • 76.54 (a)
mouse
(Mus musculus)
Mammalia Neurl3 36
  • 77.47 (n)
  • 69.57 (a)
Neurl3 16
rat
(Rattus norvegicus)
Mammalia Neurl3 36
  • 77.34 (n)
  • 69.17 (a)
tropical clawed frog
(Silurana tropicalis)
Amphibia neurl3 36
  • 48.63 (n)
  • 38.96 (a)
Species with no ortholog for NEURL3:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NEURL3 Gene

ENSEMBL:
Gene Tree for NEURL3 (if available)
TreeFam:
Gene Tree for NEURL3 (if available)

Paralogs for NEURL3 Gene

Selected SIMAP similar genes for NEURL3 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NEURL3: view

No data available for Paralogs for NEURL3 Gene

Variants for NEURL3 Gene

Sequence variations from dbSNP and Humsavar for NEURL3 Gene

SNP ID Clin Chr 02 pos Sequence Context AA Info Type MAF
rs1866444 -- 96,506,388(-) GTCTT(C/T)ACAAT upstream-variant-2KB, intron-variant
rs2118836 -- 96,497,235(-) ATGTG(A/G)AGGGA downstream-variant-500B
rs2279049 -- 96,497,432(-) CCAAC(C/T)AGACT downstream-variant-500B
rs2579504 -- 96,506,548(-) ACAAG(A/G)CTCCA upstream-variant-2KB, intron-variant
rs2579505 -- 96,502,225(-) TTCGC(A/G)GGAAG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NEURL3 Gene

Variant ID Type Subtype PubMed ID
dgv650e201 CNV Deletion 23290073
esv5003 CNV Complex 18987735
nsv874677 CNV Loss 21882294
nsv874679 CNV Gain 21882294
esv2720413 CNV Deletion 23290073
nsv2835 CNV Insertion 18451855

Relevant External Links for NEURL3 Gene

HapMap Linkage Disequilibrium report
NEURL3

Disorders for NEURL3 Gene

No disorders were found for NEURL3 Gene.

No data available for UniProtKB/Swiss-Prot for NEURL3 Gene

Publications for NEURL3 Gene

  1. A novel inflammation-induced ubiquitin E3 ligase in alveolar type II cells. (PMID: 15936721) Hu Y. … Smith J.B. (Biochem. Biophys. Res. Commun. 2005) 2 3
  2. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T. … Vidal M. (Cell 2014) 3
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T. … Sugano S. (Nat. Genet. 2004) 4
  4. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PMID: 15815621) Hillier L.W. … Wilson R.K. (Nature 2005) 4
  5. Targeted identification of glucocorticoid-attenuated response genes: in vitro and in vivo models. (PMID: 16113446) Smith J.B. … Herschman H.R. (Proc Am Thorac Soc 2004) 23

Products for NEURL3 Gene

  • QIAGEN qRT-PCR Assays for microRNAs that regulate NEURL3
    • QuantiTect SYBR Green Assays in human,mouse,rat
    • Pre-validated RT² qPCR Primer Assay in human,mouse,rat
    • QuantiFast Probe-based Assays in human,mouse,rat
    • Predesigned siRNA for gene silencing in human,mouse,rat for NEURL3
    • Block miRNA regulation of NEURL3 using miScript Target Protectors

    Sources for NEURL3 Gene

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