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NEURL3 Gene

protein-coding   GIFtS: 34
GCID: GC02M097163

Neuralized E3 Ubiquitin Protein Ligase 3

(Previous name: neuralized homolog 3 (Drosophila) pseudogene)
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(According to 1HGNC, 2Entrez Gene,
3UniProtKB/Swiss-Prot, 4UniProtKB/TrEMBL, 5OMIM, 6GeneLoc, 7Ensembl, 8DME, 9miRBase, 10fRNAdb, 12H-InvDB, 13NCBI, 14NONCODE, and/or 15RNAdb)
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Aliases
Neuralized E3 Ubiquitin Protein Ligase 31 2     Neuralized Homolog 3 (Drosophila) Pseudogene1
Lung-Inducible Neuralized-Related C3CH4 RING Domain Protein2 3     E3 Ubiquitin-Protein Ligase NEURL32
Neuralized-Like Protein 32 3     Neuralized Homolog 3 Pseudogene2
LINCR2 3     EC 6.3.2.-3

External Ids:    HGNC: 251621   Entrez Gene: 930822   Ensembl: ENSG000001631217   UniProtKB: Q96EH83   

Export aliases for NEURL3 gene to outside databases

Previous GC identifers: GC02M096527 GC02M091124


(According to Entrez Gene, GeneCards, Tocris Bioscience, Wikipedia's Gene Wiki, PharmGKB,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
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GeneCards Summary for NEURL3 Gene:
NEURL3 (neuralized E3 ubiquitin protein ligase 3) is a protein-coding gene. GO annotations related to this gene include ligase activity.

UniProtKB/Swiss-Prot: NEUL3_HUMAN, Q96EH8
Function: E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via
non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal
degradation (By similarity)




(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 37),
and/or miRBase,
Genomic Views according to UCSC (hg19) and Ensembl (release 75), Regulatory elements and Epigenetics data according to QIAGEN, and/or SwitchGear Genomics)
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RefSeq DNA sequence at NCBI GenBank:
NC_000002.11  NC_018913.2  NT_005403.18  
Regulatory elements:
   Regulatory transcription factor binding sites in the NEURL3 gene promoter:
         LHX3b/Lhx3b   Pax-5   Olf-1   NF-kappaB   Arnt   c-Rel   NF-kappaB2   FOXO4   LHX3a/Lhx3a   NF-kappaB1   
         Other transcription factors

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Epigenetics:
DNA Methylation CpG Assay Predesigned for Pyrosequencing in human, mouse, rat NEURL3


Genomic Location:
Genomic View: UCSC Golden Path with GeneCards custom track

Entrez Gene cytogenetic band: 2q11.2   Ensembl cytogenetic band:  2q11.2   HGNC cytogenetic band: 2q11.2

NEURL3 Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)
NEURL3 gene location

GeneLoc information about chromosome 2         GeneLoc Exon Structure

GeneLoc location for GC02M097163:  view genomic region     (about GC identifiers)

Start:
97,163,383 bp from pter      End:
97,173,846 bp from pter
Size:
10,464 bases      Orientation:
minus strand

(According to 1UniProtKB, HORDE, 2neXtProt, Ensembl, and/or Reactome, Modification sites according to PhosphoSitePlus, Specific Peptides from DME, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from EMD Millipore, R&D Systems, GenScript, Enzo Life Sciences, OriGene, Novus Biologicals, Sino Biological, ProSpec, Cloud-Clone Corp., eBioscience, and/or antibodies-online,
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UniProtKB/Swiss-Prot: NEUL3_HUMAN, Q96EH8 (See protein sequence)
Recommended Name: E3 ubiquitin-protein ligase NEURL3  
Size: 262 amino acids; 28789 Da

Explore the universe of human proteins at neXtProt for NEURL3: NX_Q96EH8

Explore proteomics data for NEURL3 at MOPED


See NEURL3 Protein Expression from SPIRE MOPED, PaxDB, and MaxQB

REFSEQ proteins (2 alternative transcripts): 
NP_001272414.1  NP_001272415.1  

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(According to HGNC, IUPHAR, InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
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3 InterPro protein domains:
 IPR001841 Znf_RING
 IPR006573 Neu_Z
 IPR013083 Znf_RING/FYVE/PHD

Graphical View of Domain Structure for InterPro Entry Q96EH8

ProtoNet protein and cluster: Q96EH8

UniProtKB/Swiss-Prot: NEUL3_HUMAN, Q96EH8
Similarity: Contains 1 NHR (neuralized homology repeat) domain
Similarity: Contains 1 RING-type zinc finger


Find genes that share domains with NEURL3           About GenesLikeMe


(According to 1UniProtKB, Genatlas, LifeMap Discovery™, IUBMB, and/or 2DME, Human phenotypes from GenomeRNAi, Animal models from MGI Mar 06 2013, genOway,
transcription factor targeting from QIAGEN and/or HOMER, miRNA Gene Targets from miRTarBase, shRNA from OriGene, siRNAs from OriGene, QIAGEN, microRNA from QIAGEN, SwitchGear Genomics, Gene Editing from DNA2.0, Clones from OriGene, GenScript, Sino Biological, DNA2.0, Vector BioLabs and/or Addgene, Cell Lines from GenScript, ESI BIO, In Situ Hybridization Assays from Advanced Cell Diagnostics, Flow cytometry from eBioscience, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Molecular Function:

     UniProtKB/Swiss-Prot Summary: NEUL3_HUMAN, Q96EH8
Function: E3 ubiquitin-protein ligase. Seems to utilize UBE2E1. In vitro, generates polyubiquitin chains via
non-canonical lysine residues suggesting that it is not involved in tagging substrates for proteasomal
degradation (By similarity)

     Enzyme Number (IUBMB): EC 6.3.2.-1

     Gene Ontology (GO): 2 molecular function terms:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0008270zinc ion binding IEA--
GO:0016874ligase activity IEA--
     
Find genes that share ontologies with NEURL3           About GenesLikeMe


Animal Models:
   genOway: Develop your customized and physiologically relevant rodent model for NEURL3

miRNA
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hsa-mir-335-5p (MIRT018320)

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(According to UniProtKB, COMPARTMENTS Subcellular localization database, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene.)
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Subcellular locations from COMPARTMENTS: 

CompartmentConfidence
cytosol3
extracellular2
mitochondrion1
nucleus1

(SuperPaths according to PathCards, Pathways according to R&D Systems, Cell Signaling Technology, KEGG, PharmGKB, BioSystems, Sino Biological, Reactome, Tocris Bioscience, GeneGo (Thomson Reuters), QIAGEN, and/or UniProtKB, Sets of similar genes according to GeneDecks, Interaction Networks according to QIAGEN, and/or STRING, Interactions according to 1UniProtKB, 2MINT, 3I2D, and/or 4STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2014 via Entrez Gene).
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UniProtKB/Swiss-Prot: NEUL3_HUMAN, Q96EH8
Pathway: Protein modification; protein ubiquitination

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Interactions:

    Search GeneGlobe Interaction Network for NEURL3

Gene Ontology (GO): 1 biological process term:    About this table

GO IDQualified GO termEvidencePubMed IDs
GO:0016567protein ubiquitination IEA--

Find genes that share ontologies with NEURL3           About GenesLikeMe



(Chemical Compounds according to UniProtKB, Enzo Life Sciences, EMD Millipore, Tocris Bioscience, ApexBio, HMDB, BitterDB, and/or Novoseek, Ligands according to IUPHAR, and Drugs according to DrugBank, Enzo Life Sciences, and/or PharmGKB)
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Browse Small Molecules at EMD Millipore
   Browse drugs & compounds from Enzo Life Sciences
  Browse compounds at ApexBio 

Browse Tocris compounds for NEURL3 (NEUL3)



(Secondary structures according to fRNAdb,
GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 236 Homo sapiens; Apr 25 2013) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView, transcript ids from Ensembl with links to UCSC,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
siRNAs from OriGene, QIAGEN, shRNA from OriGene, microRNA from QIAGEN, SwitchGear Genomics,
Tagged/untagged cDNA clones from OriGene, GenScript, DNA2.0, Vector BioLabs, and/or Addgene, Primers from OriGene, and/or QIAGEN, Flow cytometry from eBioscience )
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REFSEQ mRNAs for NEURL3 gene (3 alternative transcripts): 
NM_001080535.1  NM_001285485.1  NM_001285486.1  

Unigene Cluster for NEURL3:

Neuralized homolog 3 (Drosophila) pseudogene
Hs.149219  [show with all ESTs]
Unigene Representative Sequence: AL389981
4 Ensembl transcripts including schematic representations, and UCSC links where relevant:
ENST00000310865(uc010fhx.3 uc010yuo.2 uc010yup.1) ENST00000435380(uc002swc.3)
ENST00000444588 ENST00000451794
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Additional mRNA sequence: 

AK303423.1 AK311953.1 AL389981.1 BC012317.1 NR_026875.1 

4 DOTS entries:

DT.95365834  DT.430059  DT.99958813  DT.121008722 

17 AceView cDNA sequences:

BF475999 AL389981 CK904505 CB528509 NM_138397 BC012317 CA311039 BM023607 
AA662305 CB528921 AI247103 CB241870 BU163676 CA311305 BE274672 BI824527 
BG477915 

GeneLoc Exon Structure

2 Alternative Splicing Database (ASD) splice patterns (SP) for NEURL3    About this scheme

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7
SP1:                                          
SP2:        -     -                 -         


ECgene alternative splicing isoforms for NEURL3

(RNA expression data according to H-InvDB, NONCODE, miRBase, and RNAdb, Expression images according to data from BioGPS, Illumina Human BodyMap, and CGAP SAGE, Sets of similar genes according to GeneDecks, in vivo and in vitro expression data from LifeMap Discovery™, Protein expression images according to data from SPIRE 1MOPED, 2PaxDb, and 3MaxQB, plus additional links to SOURCE, and/or BioGPS, and/or UniProtKB,
PCR Arrays from QIAGEN, Primers from OriGene, and/or QIAGEN, In Situ Hybridization Assays from Advanced Cell Diagnostics)
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NEURL3 expression in normal human tissues (normalized intensities)
See probesets specificity/sensitivity at GeneAnnot
About this imageBioGPS <intensity>2/3
CGAP TAG: AAAGTGTATT
NEURL3 Expression
About this image


NEURL3 expression in embryonic tissues and stem cells    About this table
Data from LifeMap, the Embryonic Development and Stem Cells Database
 selected tissues (see all 2) fully expand
 
 Epithelial Cells
         Duct Cells Pancreatic Ducts
 
 Pancreas (Endocrine System)
         Duct Cells Pancreatic Ducts
NEURL3 Protein expression data from MOPED1, PaxDb2 and MaxQB3    About this image

NEURL3 Protein Expression

SOURCE GeneReport for Unigene cluster: Hs.149219
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In Situ
Assay Products:
 

 
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(Orthologs according to 1,2HomoloGene (2older version, for species not in 1newer version), 3euGenes, 4SGD , 5MGI Mar 06 2013, with possible further links to Flybase and/or WormBase, and/or 6Ensembl pan taxonomic compara , Gene Trees according to Ensembl and TreeFam)
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This gene was present in the common ancestor of chordates.

Orthologs for NEURL3 gene from Selected species (see all 6)    About this table
Organism Taxonomic
classification
Gene Description Human
Similarity
Orthology
Type
Details
mouse
(Mus musculus)
Mammalia Neurl31 , 5 neuralized homolog 3 homolog (Drosophila)1, 5 77.47(n)1
69.57(a)1
  1 (15.18 cM)5
2148541  NM_153408.21  NP_700457.11 
 362646025 
tropical clawed frog
(Xenopus tropicalis)
Amphibia neurl31 neuralized E3 ubiquitin protein ligase 3 48.63(n)
38.96(a)
  100145805  XM_002932566.1  XP_002932612.1 


ENSEMBL Gene Tree for NEURL3 (if available)
TreeFam Gene Tree for NEURL3 (if available)

(Paralogs according to 1HomoloGene,
2Ensembl, and 3SIMAP, Pseudogenes according to 4Pseudogene.org Build 68)
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Paralogs for NEURL3 gene
2 SIMAP similar genes for NEURL3 using alignment to 1 protein entry:     NEUL3_HUMAN:
NEURL1B    TRIM39

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(SNPs/Variants according to the 1NCBI SNP Database, 2Ensembl, 3PupaSUITE, 4UniProtKB, and DNA2.0, Linkage Disequilibrium by HapMap, Structural Variations(CNVs/InDels/Inversions) from the Database of Genomic Variants, Mutations from the Human Gene Mutation Database (HGMD), the Human Cytochrome P450 Allele Nomenclature Database, and the Locus Specific Mutation Databases (LSDB), Blood group antigen gene mutations by BGMUT, Resequencing Primers, Cancer Mutation PCR Arrays and Assays, and Copy Number PCR Arrays from QIAGEN)
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Selected SNPs for NEURL3 (see all 196)    About this table                                 

Genomic DataTranscription Related DataAllele Frequencies
SNP IDValidClinical
significance
Chr 2 posSequence#AA
Chg
TypeMore#Allele
freq
PopTotal
sample
More
----------
rs1412918881,2
--97162957(+) ACAATA/GGGTTC 1 -- int10--------
rs21188361,2
C,F,A,H--97162972(-) ATGTGA/GAGGGA 1 -- int135Minor allele frequency- N:0.00EA NA NS WA CSA 4650
rs1825136431,2
--97163022(+) AGCAGA/GGGACA 1 -- int10--------
rs22790491,2
C,F,H--97163169(-) CCAACC/TAGACT 1 -- int117Minor allele frequency- T:0.07EA NA NS 3070
rs1470111461,2
--97163235(+) CGAGCA/GCCCAG 1 -- int10--------
rs1476344591,2
--97163305(+) AAATGC/TTGCAT 1 -- int10--------
rs1146594971,2
C,F--97163474(+) TCATCT/CTCAGA 1 -- nc-transcript-variant1Minor allele frequency- C:0.02WA 118
rs1880341751,2
--97163512(+) CACCCC/TGAAAG 1 -- nc-transcript-variant0--------
rs1924847651,2
--97163722(+) GCCACA/CCCATC 1 -- nc-transcript-variant0--------
rs1832640301,2
--97163846(+) TCCTCC/TCTCTG 1 -- nc-transcript-variant0--------

HapMap Linkage Disequilibrium report for NEURL3 (97163383 - 97173846 bp)

Structural Variations
     Database of Genomic Variants (DGV) 6 variations for NEURL3:    About this table    
Variant IDTypeSubtypePubMed ID
esv2720413CNV Deletion23290073
dgv650e201CNV Deletion23290073
nsv2835CNV Insertion18451855
nsv874677CNV Loss21882294
nsv874679CNV Gain21882294
esv5003CNV Complex18987735

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(in which this Gene is Involved, According to MalaCards, OMIM, UniProtKB, the University of Copenhagen DISEASES database, Genatlas, GeneTests, GAD, HuGE Navigator, and/or TGDB.)
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  --

(in PubMed. Associations of this gene to articles via 1Entrez Gene, 2UniProtKB/Swiss-Prot, 3HGNC, 4GAD, 5PharmGKB, 6HMDB, 7DrugBank, 8UniProtKB/TrEMBL, 9 Novoseek, and/or 10fRNAdb)
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PubMed articles for NEURL3 gene integrated from 10 sources:
(articles sorted by number of sources associating them with NEURL3)
    Utopia: connect your pdf to the dynamic
world of online information

  1. A novel inflammation-induced ubiquitin E3 ligase in alveolar type II cells. (PubMed id 15936721)1, 3 Hu Y....Smith J.B. (Biochem. Biophys. Res. Commun. 2005)
  2. Generation and annotation of the DNA sequences of human chromosomes 2 and 4. (PubMed id 15815621)2 Hillier L.W.... Wilson R.K. (Nature 2005)
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PubMed id 14702039)2 Ota T.... Sugano S. (Nat. Genet. 2004)
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)1 Strausberg R.L....Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002)
  5. The sequence of the human genome. (PubMed id 11181995)1 Venter J.C.... Zhu X. (Science 2001)
  6. Normalization and subtraction: two approaches to facilitate gene discovery. (PubMed id 8889548)1 Bonaldo M.F.... Soares M.B. (Genome Res. 1996)
  7. Targeted identification of glucocorticoid-attenuated response genes: in vitro and in vivo models. (PubMed id 16113446)9 Smith J.B. and Herschman H.R. (Proc Am Thorac Soc 2004)

(in PubMed, OMIM, and NCBI Bookshelf)
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 ANDOR
Aliases
Free Text  

  Query String
PubMed
OMIM
NCBI Bookshelf
  (Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, Kegg, and/or H-InvDB)
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Entrez Gene: 93082 HGNC: 25162 AceView: LOC93082 Ensembl:ENSG00000163121 euGenes: HUgn93082
ECgene: NEURL3 H-InvDB: NEURL3

(According to HUGE)
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  --

(According to PharmGKB, ATLAS, HORDE, IMGT, LEIDEN, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL, and/or others, e.g. Wikipedia and GeneReviews, via UniProtKB/Swiss-Prot)
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  --

(Patent information from GeneIP,
Licensable technologies from WIS Yeda, Salk, Tufts,
IP news from LifeMap Sciences, Inc.)
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Patent Information for NEURL3 gene:
Search GeneIP for patents involving NEURL3

GeneCards and IP:
Japan Patent Office Licenses GeneCards     European Patent Office Licenses GeneCards     Improving the IP Search



(Antibodies, recombinant proteins, and assays from EMD Millipore, R&D Systems, OriGene, QIAGEN, GenScript, Cell Signaling Technology, Novus Biologicals, Sino Biological, Enzo Life Sciences, Abcam, ProSpec, Cloud-Clone Corp., Thermo Fisher Scientific, eBioscience, antibodies-online, and/or others, Gene Editing from DNA2.0. Clones from OriGene, GenScript, Sino Biological, DNA2.0, SwitchGear Genomics, Vector BioLabs, Addgene, Cell lines from GenScript, and ESI BIO, Flow cytometery from eBioscience, PCR Arrays from QIAGEN, Drugs and/or compounds from EMD Millipore, Tocris Bioscience, Enzo Life Sciences, and/or ApexBio, In Situ Hybridization Assays from
Advanced Cell Diagnostics, Animal models from genOway)
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GeneCards Homepage - Last full update: 7 May 2014 - Incrementals: 9 May 2014 , 2 Jun 2014 , 26 Jun 2014 , 30 Jun 2014 , 21 Aug 2014 , 8 Sep 2014 , 7 Oct 2014

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