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NEURL Gene

protein-coding GIFtS: 53

GC10P105244

neuralized homolog (Drosophila)
(Previous names: neuralized (Drosophila)-like, neuralized-like (Drosophila) )
Symbol approved by the HUGO Gene Nomenclature Committee (HGNC) database

(According to ¹HGNC, ²Entrez Gene,
³UniProtKB/Swiss-Prot, ⁴UniProtKB/TrEMBL, ⁵OMIM, ⁶GeneLoc , and/or ⁷Ensembl, ⁸miRBase)
About This Section

Aliases
NEURL1 ^¹, ², ³
OTTHUMP00000020414 ^²
RNF67 ^¹, ², ³
bA416N2.1 ^²
h-neu ^¹, ³
neu ^²
neu-1 ^¹, ²
neuralized-like ^²

Descriptions
RING finger protein 67 ^³
h-neuralized 1 ^³
neuralized (Drosophila)-like ^¹
neuralized homolog (Drosophila) ^²
neuralized-like (Drosophila) ^¹

External Ids
HGNC: 7761¹
Entrez Gene: 9148²
UniProtKB: O76050³
Ensembl: ENSG00000107954⁷

Search outside databases for aliases for NEURL gene

Previous GC identifers: GC10P104147 GC10P104487 GC10P105384 GC10P104918

(According to Entrez Gene, Wikipedia's Gene Wiki,
UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL)
About This Section

Gene Wiki entry for NEURL

(According to GeneLoc and/or HGNC, and/or
Entrez Gene (NCBI build 36),
and/or miRBase,
Genomic Views according to UCSC and Ensembl, Transcription factor binding sites according to SABiosciences)
About This Section

Genomic View:

UCSC Golden Path with GeneCards custom track

Transcription factor binding sites upstream to the NEURL gene

Entrez Gene cytogenetic band: 10q25.1 Ensembl cytogenetic band: 10q24.33 HGNC cytogenetic band: 10q25.1

NEURL Gene in genomic location: bands according to Ensembl, locations according to (and/or Entrez Gene and/or Ensembl if different)

GeneLoc gene densities for chromosome 10 GeneLoc Exon Structure

GeneLoc location for GC10P105244: (about GC identifiers)

Start:	105,244,038 bp from pter
End:	105,342,293 bp from pter
Size:	98,256 bases
Orientation:	plus strand

RefSeq DNA sequence:

NC_000010.9 NT_030059.12

(According to ¹UniProtKB, and/or Ensembl, Phosphorylation sites according to ²Phosphosite, RefSeq according to NCBI, PDB rendering according to OCA and/or Proteopedia, Recombinant Proteins from Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Enzo Life Sciences, Abnova, OriGene and/or, Abcam,
Biochemical Assays by Invitrogen, Millipore, R&D Systems, Cell Signaling Technology, and/or Enzo Life Sciences, Ontologies according to Gene Ontology Consortium 01 Apr 2009 and Entrez Gene, Antibodies by Invitrogen, Millipore, Sigma-Aldrich, R&D Systems, Cell Signaling Technology, Abcam, Abnova, and/or Novus Biologicals)
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UniProtKB/Swiss-Prot: NEUL1_HUMAN, O76050 (See protein sequence)

Recommended Name: Neuralized-like protein 1

Size: 574 amino acids; 61860 Da

Subcellular location: Cytoplasm, perinuclear region

Sequence caution: Sequence=CAI13958.1; Type=Erroneous gene model prediction; Sequence=CAI13959.1;

Type=Erroneous gene model prediction;

Secondary accessions: Q5TDR2 Q5TDR3 Q8TAN0 Q9H463

Alternative splicing: 2 isoforms: O76050-1 O76050-2

REFSEQ proteins: NP_004201.3

ENSEMBL proteins:

ENSP00000358795 ENSP00000358792

Human Recombinant Proteins

	Browse Drug Discovery Central at Invitrogen for human recombinant proteins
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	Recombinant Proteins from Abcam (NEURL)
	Browse Abnova for Human Recombinant Proteins

Browse Origene for full length recombinant human proteins expressed in human HEK293 cells

1 Gene Ontology (GO) cellular component term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005737	cytoplasm	IEA	--

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Antibodies for NEURL:

	Browse Antibodies Central at Invitrogen
	Browse Millipore's Extensive Line of Mono- and Polyclonal Antibodies
	Browse Antibodies at Sigma-Aldrich
	Browse R&D Systems for Antibodies
	Antibodies from Abcam (NEURL), each with their Abpromise^SM
	Browse Abnova for Monoclonal and Polyclonal Antibodies
	Search Novus for antibodies for NEURL

Assays for NEURL:

	Browse Invitrogen for biochemical assays
	Browse Kits and Assays available from Millipore
	Browse R&D Systems for biochemical assays
	Browse biochemical assays available from Enzo Life Sciences

(According to InterPro, ProtoNet, UniProtKB, and/or BLOCKS, Sets of similar genes according to GeneDecks)
About This Section

Graphical View of Domain Structure for InterPro Entry O76050

ProtoNet protein and cluster: O76050

1 Blocks protein family: IPB001841 Zn-finger

UniProtKB/Swiss-Prot: NEUL1_HUMAN, O76050

Similarity: Contains 2 NHR (neuralized homology repeat) domains

Similarity: Contains 1 RING-type zinc finger

(According to MGI Jun 06 2009, UniProtKB, IUBMB,and/or Genatlas,
shRNA from OriGene, Sigma-Aldrich, RNAi from Sigma-Aldrich,
RNAi Products, Clones, and Q-PCR Products from Invitrogen, Millipore, OriGene, and/or Abnova, siRNAs from Applied Biosystems, SYBR primers from OriGene, Cell-based Assays from Millipore, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (NEURL)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (NEURL)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004210

Applied Biosystems Silencer® siRNAs for NEURL

Sigma-Aldrich siRNA and siRNA Panels for NEURL

Sigma-Aldrich shRNA Panels and shRNA for NEURL

Explore Sigma-Aldrich super-pooled esiRNAs

Clones:		Browse Clone Ranger at Invitrogen for clones
		Browse Clones for the Expression of Recombinant Proteins Available from Millipore

OriGene GFP tagged cDNA clone in CMV expression vector: NM_004210
Myc/DDK tagged cDNA clone in CMV expression vector: NM_004210
untagged cDNA clone in CMV expression vector: NM_004210

Primers:

Browse Quantitative PCR Central at Invitrogen for Q-PCR LUX™ Primers

OriGene genome-wide validated SYBR primer pairs: NM_004210

Genatlas biochemistry entry for NEURL:

Drosophila neuralized homolog within the malignant astrocytoma region on chromosome 10,expressed in

brain,potentially involved in neurogenesis

8 MGI mutant phenotypes (inferred from 2 alleles) (MGI details for Neurl1a):

behavior/neurological	embryogenesis	endocrine/exocrine gland	homeostasis/metabolism	nervous system
normal	reproductive system	tumorigenesis

3 Gene Ontology (GO) molecular function terms (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0005515	protein binding	IEA	--
GO:0008270	zinc ion binding	IEA	--
GO:0046872	metal ion binding	IEA	--

About this table

(Pathways according to Invitrogen (maps by GeneGo), Millipore, Cell Signaling Technology, Sigma-Aldrich, KEGG and/or UniProtKB,
Sets of similar genes according to GeneDecks, Proteins Network according to SABiosciences, Interactions according to ¹UniProtKB, ²MINT, and/or ³STRING, with links to IntAct and Ensembl, Ontologies according to Gene Ontology Consortium 01 Apr 2009 via Entrez Gene.)
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1 Gene Ontology (GO) biological process term (links to tree view):

GO ID	Qualified GO term	Evidence	PubMed IDs
GO:0007399	nervous system development	TAS	9519875

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(Chemical Compounds according to UniProtKB, Enzo Life Sciences, Sigma-Aldrich, Tocris Bioscience, and/or Novoseek and Drugs according to Enzo Life Sciences and/or PharmGKB)
About This Section

Browse drugs & compounds from Enzo Life Sciences

Browse Small Molecules at Sigma-Aldrich

Browse Tocris compounds for NEURL

(GenBank/EMBL/DDBJ Accessions according to
Unigene (Build 219 Homo sapiens; Jun 2 2009) or GenBank,
RefSeq according to Entrez Gene,
DOTS (version 10), and/or AceView,
non coding RNAs according to RNAdb,
ESTs according to GeneTide,
exon structure from GeneLoc, alternative splicing isoforms according to ASD and/or ECgene,
RNAi Products from Invitrogen, Millipore, and/or Abnova,
siRNAs from Applied Biosystems, Sigma-Aldrich,
shRNA from Sigma-Aldrich, OriGene,
Tagged/untagged cDNA clones from OriGene,
Expression Assays from Applied Biosystems)
About This Section

Inhib. RNA:		Invitrogen RNAi Products for gene knock-down (NEURL)
		Browse for Gene Knock-down Tools from Millipore
		Abnova Chimera RNAi Products for Gene knock-down (NEURL)

OriGene 29mer shRNA kit in GFP-retroviral vector: NM_004210

Sigma-Aldrich siRNA and siRNA Panels for NEURL

Sigma-Aldrich shRNA Panels and shRNA for NEURL

Explore Sigma-Aldrich super-pooled esiRNAs

Applied Biosystems Silencer® siRNAs:

NM_004210

REFSEQ mRNAs for NEURL gene:

NM_004210.4

Applied Biosystems TaqMan ® Gene Expression Assays:

NM_004210

              OriGene GFP tagged cDNA clone in CMV expression vector: NM_004210
                                 Myc/DDK tagged cDNA clone in CMV expression vector: NM_004210
                                 untagged cDNA clone in CMV expression vector: NM_004210

Additional cDNA sequence:

AF029729.1 AK299620.1 BC026336.1 BX648827.1 CR607490.1 U87864.1

12 DOTS entries:

DT.95137847 DT.315206 DT.121244660 DT.97859116 DT.87046983 DT.97859117 DT.121244722 DT.100682224

DT.405394 DT.454491 DT.92422740 DT.99940506

24/187 AceView cDNA sequences (see all 187 ):

AI216388 BM314748 CA775047 BM712445 AI096380 BQ269642 BU951423 CB068797

BM713432 AA971863 CA774789 BF591302 BM930417 BQ638204 AI693957 BQ417444

BQ287987 BU952430 BG656185 AW449663 AW205080 BQ632047 BM724707 AI142671

highest scoring ESTs for NEURL:

AF029729 AA322717 AA323445 AA326806 AA612873 AI025302 AI096380 AI268680 AI660543 AI739022

Unigene Cluster for NEURL:

Neuralized homolog (Drosophila)

Hs.716382 [show with all ESTs]

Unigene Representative Sequence: NM_004210

GeneLoc Exon Structure

4 Alternative Splicing Database (ASD) splice patterns (SP) for NEURL

ExUns:	1	^	2	^	3	^	4	^	5a	·	5b	^	6	^	7a	·	7b	^	8	^	9a	·	9b
SP1:			-		-												-
SP2:					-
SP3:
SP4:

About this scheme

ECgene alternative splicing isoforms for NEURL

2 Ensembl transcripts including schematic representations:

ENST00000369780 ENST00000369777

(Experimental results according to ¹GeneNote and GNF BioGPS,
probe sets-to-genes annotations according to ²GeneAnnot , ³GeneTide , Sets of similar genes according to GeneDecks, Electronic Northern calculations according to data from UniGene (Build 219 Homo sapiens), SAGE tags according to CGAP, plus additional links to SOURCE, and/or GNF BioGPS, and/or EXPOLDB, and/or UniProtKB,
Expression Assays from Applied Biosystems )
About This Section

NEURL expression in normal and diseased human tissues

Applied Biosystems TaqMan ® Gene Expression Assays for NEURL

¹ / ² / ³

5 probe-sets matching NEURL gene

Affymetrix probe-set	Array	# genes	Sensitivity	Specificity	Correlation	Length	Gb_Accession	Consensus	Uniqueness	Score	Rank
Affymetrix probe-set	Array	GeneAnnot data			GeneNote data		GeneTide data
32717_at²^{, 3}	U95-A	1	1.00	1.00	1.00	1.00	AF029729	1.00	1.00	1.00	1
204889_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AF029729	1.00	1.00	1.00	1
204888_s_at²^{, 3}	U133-A	1	1.00	1.00	--	--	AA772093	0.40	1.00	0.76	1
204889_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--
204888_s_at²	U133Plus2	1	1.00	1.00	--	--	--	--	--	--	--

GeneDecks NEURL for binary patterns associated with the probe-sets selected above

About GeneDecksing

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Data from

(Publications) and GNF BioGPS
About these images
About these images

CGAP SAGE TAG: --

SOURCE GeneReport for Unigene cluster: Hs.716382
Expression variation in blood from EXPOLDB for NEURL
UniProtKB/Swiss-Prot: NEUL1_HUMAN, O76050
Tissue specificity: Expressed in brain, testis, pituitary gland, pancreas and bone marrow. Also
poorly expressed in an malignant astrocytomas and several neuroectodermal tumor cell lines

(Orthologs according to ^1,2HomoloGene (²older version, for species not in ¹newer version), ³euGenes, ⁴SGD and/or ⁵MGI Jun 06 2009, with possible further links to Flybase and/or WormBase, Gene Trees according to Ensembl)
About This Section

Orthologs for NEURL gene from 5/9 species (see all 9 )

Organism	Gene	Locus	Description	Human Similarity	NCBI accessions
dog (Canis familiaris)	NEURL¹	--	neuralized homolog (Drosophila)	93.44(n) 95.47(a)	486873 XM_544003.2 XP_544003.2
cow (Bos taurus)	NEURL¹	--	neuralized homolog (Drosophila)	92.86(n) 94.95(a)	510334 XM_587462.3 XP_587462.3
rat (Rattus norvegicus)	Neurl¹	--	neuralized homolog (Drosophila)	90.75(n) 94.16(a)	309459 XM_219970.4 XP_219970.4
mouse (Mus musculus)	Neurl1a⁵ Neurl¹	19 (49.25 cM)⁵	neuralized homolog 1A (Drosophila)⁵ neuralized-like homolog (Drosophila)¹	90.82(n)¹ 93.38(a)¹	18011¹ NM_021360.3¹ NP_067335.3¹ AA563492⁵ AF400063⁵ (see all 21)
chicken (Gallus gallus)	NEURL¹	--	neuralized homolog (Drosophila)	73.46(n) 77.43(a)	423875 NM_001012910.1 NP_001012928.1

About this table Species with no ortholog for NEURL

ENSEMBL Gene Tree for NEURL

(Paralogs according to ¹HomoloGene
and ²Ensembl, Pseudogenes according to ³Pseudogene.org)
About This Section

Paralogs for NEURL gene

NEURL2² NEURL1B²

(According to the ¹NCBI SNP Database, ²Ensembl, ³PupaSUITE, and UniProtKB, Linkage Disequilibrium by HapMap, Genotyping Reagents from Applied Biosystems)
About This Section

10/471 NCBI SNPs in NEURL are shown (see all 471 )
(Click for Applied Biosystems TaqMan ® Genotyping Assay) (see all 162)

AB	SNP ID	Valid	Chr 10 pos	Sequence	Recs	AA Chg	Type	More	Recs	Allele freq	Pop	Total sample	More
AB	Genomic Data				Transcription Data				Allele Frequencies
				--	--	--		--	--				--
--	rs7918186^1,2	A,C,F,H	105340437(+)	`CCCATC/TTGAGG`	1	--	ut3¹ ese³		4		EU EA WA	412
	rs2986041^1,2	A,C,F	105244080(+)	`TCAGCT/GCCTGC`	1	--	ut5¹		2		NA	182
--	rs12217979^1,2	F	105341987(+)	`CTTCCG/ATGAGG`	1	--	ut3¹ ese³		1		MN	184
--	rs3014203^1,2	C	105243920(+)	`CCAGCC/TTGCGC`	1	--	ng5¹ ese³		0	--	--	--	--
	rs3814216^1,2	H	105242822(+)	`AACCCC/TCTTCC`	1	--	ng5¹ trp³		2		EA EU	1622
	rs2236209^1,2	A,C,F	105334746(+)	`CTGCCC/TTTCAG`	1	P/P	syn¹		1		EA	1454
	rs2273556^1,2	F	105340023(+)	`TGCTAC/TGCCTG`	1	Y/Y	syn¹ ese³		1		EA	1504
	rs2986060^1,2	A,C,F,H,O	105265438(+)	`TGAAAC/GCAGAT`	1	--	int¹		8		EA NA EU WA	610
	rs3014207^1,2	A,C,F,H,O	105252867(+)	`GAGTCG/CAAAGG`	1	--	int¹		7		NA EU EA WA	522
	rs902991^1,2	A,C,F,H,O	105332890(-)	`TCTCCA/GTGCCA`	1	--	int¹		16		EA NA EU WA	1352

About this table

HapMap Linkage Disequilibrium images for NEURL (up to first 250kb)

(in which this Gene is Involved, According to OMIM, UniProtKB, PharmGKB, Genatlas, GeneTests, Blood group antigen gene mutations by BGMUT, HGMD, GAD, HuGE Navigator, BCGD, and/or TGDB.)
About This Section

OMIM: 603804

(Possibly Related Articles in Doctor's Guide)
About This Section

(in PubMed. Associations of this gene to articles via ¹Novoseek, ²HGNC, ³Entrez Gene, ⁴UniProtKB/Swiss-Prot, ⁵UniProtKB/TrEMBL, ⁶GAD, and/or ⁷PharmGKB)
About This Section

8 PubMed articles for NEURL gene:

Identification of a human homolog of the Drosophila neuralized gene within the 10q25.1 malignant astrocytoma deletion region. (PubMed id 9519875)^{2, 3, 4} Nakamura H.... Saya H. (1998)
The DNA sequence and comparative analysis of human chromosome 10. (PubMed id 15164054)^{3, 4} Deloukas P.... Rogers J. (2004)
The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PubMed id 15489334)^{3, 4} Gerhard D.S....Malek J. (2004)
Isolation of a murine homologue of the Drosophila neuralized gene, a gene required for axonemal integrity in spermatozoa and terminal maturation of the mammary gland. (PubMed id 11585928)^{3, 4} Vollrath B.... Fitzgerald K. (2001)
Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PubMed id 12477932)³ Strausberg R.L....Marra M.A. (2002)
Dendritic localization of mammalian neuralized mRNA encoding a protein with transcription repression activities. (PubMed id 12213446)³ Timmusk T....Neuman T. (2002)
Cloning, chromosomal organization and expression analysis of Neurl, the mouse homolog of Drosophila melanogaster neuralized gene. (PubMed id 11997106)³ Pavlopoulos E....Moschonas N.K. (2002)
The SOCS box: a tale of destruction and degradation. (PubMed id 12076535)³ Kile B.T....Hilton D.J. (2002)

(in PubMed, OMIM, and NCBI Bookshelf)
About This Section

		AND	OR
Aliases
Free Text

Query String		PubMed OMIM NCBI Bookshelf
	(Note: In FireFox, select the above section and copy using Ctrl-C)

(According to Entrez Gene, HGNC, AceView, euGenes, Ensembl, miRBase, ECgene, and/or H-InvDB)
About This Section

Entrez Gene: 9148	HGNC: 7761	AceView: NEURL	Ensembl:ENSG00000107954	euGenes: HUgn9148
ECgene: NEURL	H-InvDB: NEURL

(According to HUGE)
About This Section

(According to ATLAS, HORDE, IMGT, MTDB, LEIDEN, UniProtKB/Swiss-Prot, and/or UniProtKB/TrEMBL,
Wikipedia and/or GeneReviews via UniProtKB/Swiss-Prot)
About This Section

Name	Description
ATLAS Chromosomes in Cancer entry for NEURL	Genetics and Cytogenetics in Oncology and Haematology

Licensable Technologies for NEURL
(Available from WIS Yeda, Salk, Tufts)

About This Section

(Reagents available from Applied Biosystems, Antibodies and assays by Cell Signaling Technology, Abcam, Novus Biologicals,
Sigma-Aldrich, R&D Systems, Millipore, Abnova, and/or Invitrogen, Clones available from OriGene,and/or Invitrogen, Drugs and/or compounds by Sigma-Aldrich,
Enzo Life Sciences, and/or Tocris Bioscience)
About This Section

Products for NEURL:

TaqMan ® Gene Expression Assays

TaqMan ® Genotyping Assays

Free SNP selection tool

Invitrogen iPath Pathways	Invitrogen BLOCK-iT™ RNAi
Invitrogen Antibodies	Invitrogen Assays
Invitrogen Clones	Invitrogen Q-PCR Products
Invitrogen Human Recombinant Kinases	Invitrogen Custom Antibody and Peptide Service
Invitrogen Proteins / Assays / Screening Services	Search Invitrogen catalog for NEURL-related products

	Millipore Custom Antibody & Bulk Services
	Millipore Preclinical / Clinical Development Services
	Millipore Immunoassay Services
	Millipore Target Screening & Profiling Services

	Predesigned and custom siRNAs for NEURL		Browse antibodies at Sigma-Aldrich
	Explore super-pooled esiRNAs		Browse proteins at Sigma-Aldrich
	Lentivirus-delivered shRNAs for NEURL		Browse small molecules at Sigma-Aldrich
	"Your Favorite Gene" Pathways		feedback

	Antibodies		Primer Pairs
	Cell Culture Products		ELISAs
	Flow Cytometry Kits		Protease Activity Assays & Reagents
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	Multiplex/Array Assay Kits & Reagents		ELISpot Kits & Development Modules
	Recombinant & Natural Proteins

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Search Novus for antibodies for NEURL

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NEURL Gene at Home site.
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NEURL Gene

protein-coding GIFtS: 53

Aliases &
Descriptions
for NEURL

Summaries
for NEURL

Genomic Location
for NEURL

Proteins
for NEURL

Protein Domains/
Families
for NEURL

Gene Function
for NEURL

Pathways & Interactions
for NEURL

Drugs & Compounds
for NEURL

Transcripts
for NEURL

Expression
for NEURL

Orthologs
for NEURL

Paralogs
for NEURL

SNPs/Variants
for NEURL

Disorders & Mutations
for NEURL

Medical News
for NEURL

Publications
for NEURL

Search for NEURL

Genome Databases showing NEURL

Other Databases showing NEURL

Specialized Databases showing NEURL

Licensable Technologies
for NEURL

Services
for NEURL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

NEURL Gene

protein-coding GIFtS: 53

Aliases & Descriptionsfor NEURL

Summariesfor NEURL

Genomic Locationfor NEURL

Proteinsfor NEURL

Protein Domains/Familiesfor NEURL

Gene Functionfor NEURL

Pathways & Interactionsfor NEURL

Drugs & Compoundsfor NEURL

Transcriptsfor NEURL

Expression for NEURL

Orthologsfor NEURL

Paralogsfor NEURL

SNPs/Variantsfor NEURL

Disorders & Mutationsfor NEURL

Medical Newsfor NEURL

Publicationsfor NEURL

Search for NEURL

Genome Databases showing NEURL

Other Databases showing NEURL

Specialized Databases showing NEURL

Licensable Technologiesfor NEURL

Servicesfor NEURL

Gene Index: 3 5 A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

Aliases &
Descriptions
for NEURL

Summaries
for NEURL

Genomic Location
for NEURL

Proteins
for NEURL

Protein Domains/
Families
for NEURL

Gene Function
for NEURL

Pathways & Interactions
for NEURL

Drugs & Compounds
for NEURL

Transcripts
for NEURL

Expression
for NEURL

Orthologs
for NEURL

Paralogs
for NEURL

SNPs/Variants
for NEURL

Disorders & Mutations
for NEURL

Medical News
for NEURL

Publications
for NEURL

Licensable Technologies
for NEURL

Services
for NEURL