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Aliases for NEGR1-IT1 Gene

Subcategory (RNA class) for NEGR1-IT1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NEGR1-IT1 Gene

  • NEGR1 Intronic Transcript 1 2 3 5
  • NEGR1 Intronic Transcript 1 (Non-Protein Coding) 2

External Ids for NEGR1-IT1 Gene

Previous GeneCards Identifiers for NEGR1-IT1 Gene

  • GC01M072260

Summaries for NEGR1-IT1 Gene

GeneCards Summary for NEGR1-IT1 Gene

NEGR1-IT1 (NEGR1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEGR1-IT1 Gene

Genomics for NEGR1-IT1 Gene

Regulatory Elements for NEGR1-IT1 Gene

Enhancers for NEGR1-IT1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH01F071835 0.4 Ensembl 0.8 +1.9 1912 0.2 NFYB NEGR1-IT1 GC01P071802
GH01F071861 0.5 Ensembl 0.3 -24.3 -24289 0.6 JUND FOS TCF7L2 NEGR1-IT1 GC01M071897
GH01F071881 0.6 Ensembl ENCODE 0.2 -45.2 -45177 1.4 MAX GC01M071897 NEGR1-IT1
GH01F071868 0.3 FANTOM5 0.3 -31.5 -31512 0.2 NEGR1-IT1 GC01M071897
GH01F071888 0.2 Ensembl 0.2 -51.5 -51498 0.6 GC01M071897 NEGR1-IT1
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NEGR1-IT1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NEGR1-IT1 Gene

71,794,232 bp from pter
71,837,012 bp from pter
42,781 bases
Minus strand

Genomic View for NEGR1-IT1 Gene

Genes around NEGR1-IT1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEGR1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEGR1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEGR1-IT1 Gene

Proteins for NEGR1-IT1 Gene

Post-translational modifications for NEGR1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEGR1-IT1 Gene

Domains & Families for NEGR1-IT1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEGR1-IT1 Gene

Function for NEGR1-IT1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEGR1-IT1 Gene

Localization for NEGR1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NEGR1-IT1 Gene

Pathways & Interactions for NEGR1-IT1 Gene

SuperPathways for NEGR1-IT1 Gene

No Data Available

Interacting Proteins for NEGR1-IT1 Gene

Gene Ontology (GO) - Biological Process for NEGR1-IT1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NEGR1-IT1 Gene

Transcripts for NEGR1-IT1 Gene

mRNA/cDNA for NEGR1-IT1 Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEGR1-IT1 Gene

NEGR1 intronic transcript 1 (non-protein coding):
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEGR1-IT1 Gene

No ASD Table

Relevant External Links for NEGR1-IT1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NEGR1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NEGR1-IT1 Gene

SOURCE GeneReport for Unigene cluster for NEGR1-IT1 Gene:

genes like me logo Genes that share expression patterns with NEGR1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NEGR1-IT1 Gene

Orthologs for NEGR1-IT1 Gene

Evolution for NEGR1-IT1 Gene

Gene Tree for NEGR1-IT1 (if available)
Gene Tree for NEGR1-IT1 (if available)

No data available for Orthologs for NEGR1-IT1 Gene

Paralogs for NEGR1-IT1 Gene

No data available for Paralogs for NEGR1-IT1 Gene

Variants for NEGR1-IT1 Gene

Sequence variations from dbSNP and Humsavar for NEGR1-IT1 Gene

SNP ID Clin Chr 01 pos Sequence Context AA Info Type
rs10524992 -- 71,834,909(+) ACACA(-/CACACACACACACACACACACACA)GCAGT intron-variant
rs10552883 -- 71,831,806(+) AAAAG(-/AA)AAAAA intron-variant
rs10668432 -- 71,836,499(+) TATAT(-/AT/ATAT)GAAGT intron-variant
rs111238422 -- 71,811,183(+) GTAAC(A/C)ATCTC intron-variant
rs111338452 -- 71,837,092(+) TCTCA(C/T)TTTGC intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NEGR1-IT1 Gene

Variant ID Type Subtype PubMed ID
nsv830181 CNV gain 17160897
nsv1008210 CNV loss 25217958
esv3893668 CNV loss 25118596
esv2762150 CNV loss 21179565

Relevant External Links for NEGR1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEGR1-IT1 Gene

Disorders for NEGR1-IT1 Gene

Relevant External Links for NEGR1-IT1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:

No disorders were found for NEGR1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEGR1-IT1 Gene

Publications for NEGR1-IT1 Gene

  1. Association of systemic lupus erythematosus with C8orf13-BLK and ITGAM-ITGAX. (PMID: 18204098) Hom G. … Behrens T.W. (N. Engl. J. Med. 2008) 3 64
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg R.L. … Marra M.A. (Proc. Natl. Acad. Sci. U.S.A. 2002) 3 64

Products for NEGR1-IT1 Gene

Sources for NEGR1-IT1 Gene

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