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Aliases for NECAB2 Gene

Aliases for NECAB2 Gene

  • N-Terminal EF-Hand Calcium Binding Protein 2 2 3 5
  • Synaptotagmin-Interacting Protein 2 3 4
  • Neuronal Calcium-Binding Protein 2 3 4
  • EF-Hand Calcium-Binding Protein 2 3 4
  • Stip-2 3 4
  • EFCBP2 3 4
  • N-Terminal EF-Hand Calcium-Binding Protein 2 3
  • EF-Hand Calcium Binding Protein 2 2
  • Neuronal Calcium Binding 2 3

External Ids for NECAB2 Gene

Previous HGNC Symbols for NECAB2 Gene

  • EFCBP2

Previous GeneCards Identifiers for NECAB2 Gene

  • GC16P083744
  • GC16P082560
  • GC16P069754

Summaries for NECAB2 Gene

Entrez Gene Summary for NECAB2 Gene

  • The protein encoded by this gene is a neuronal calcium-binding protein that binds to and modulates the function of at least two receptors, adenosine A(2A) receptor and metabotropic glutamate receptor type 5. [provided by RefSeq, Jul 2016]

GeneCards Summary for NECAB2 Gene

NECAB2 (N-Terminal EF-Hand Calcium Binding Protein 2) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is NECAB1.

UniProtKB/Swiss-Prot for NECAB2 Gene

  • May act as a signaling scaffold protein that senses intracellular calcium. Can modulate ligand-induced internalization of ADORA2A and coupling efficiency of mGluR5/GRM5; for both receptors may regulate signaling activity such as promoting MAPK1/3 (ERK1/2) activation.

Gene Wiki entry for NECAB2 Gene

Additional gene information for NECAB2 Gene

No data available for CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NECAB2 Gene

Genomics for NECAB2 Gene

Regulatory Elements for NECAB2 Gene

Enhancers for NECAB2 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH16H083993 1.4 Ensembl ENCODE dbSUPER 25.1 +29.2 29236 1 ELF3 ARID4B DNMT3B HSF1 RCOR1 FOS ATF7 THAP11 CEBPB SMARCB1 NECAB2 KLHL36 RNA5SP432 SLC38A8 OSGIN1 MLYCD ENSG00000261243 TAF1C ADAD2 ENSG00000260859
GH16H083995 1.4 FANTOM5 Ensembl ENCODE dbSUPER 17.7 +30.8 30751 0 MXI1 RFX1 DDX20 NFYC BMI1 RFX5 MYNN ZXDB NECAB2 DNAAF1 RNA5SP432 SLC38A8 ENSG00000260300 KLHL36 HSDL1 ADAD2 PIR54401 GC16M084039
GH16H084062 1.1 ENCODE dbSUPER 12.1 +97.7 97716 0 HDGF CTCF ATF1 RB1 ARID4B SIN3A RAD21 FOSL1 MTA3 CTBP1 RNA5SP432 MBTPS1 NECAB2 OSGIN1 TAF1C HSDL1 DNAAF1 MLYCD SLC38A8 ENSG00000274677
GH16H084044 1 ENCODE dbSUPER 12.1 +79.2 79166 0 SOX13 CTCF ESRRA ARID4B RAD21 RARA SMC3 ZNF143 NR2F6 SMARCA5 TAF1C NECAB2 OSGIN1 ADAD2 HSDL1 DNAAF1 KCNG4 SLC38A8 ENSG00000274677
GH16H083990 0.6 dbSUPER 17.3 +25.4 25429 0 GATAD2A NFIL3 ZNF157 NFIA ZNF512 HLF CREB1 HSDL1 NECAB2 RNA5SP432 SLC38A8 OSGIN1 DNAAF1 TAF1C ADAD2 MLYCD PIR54401
- Elite enhancer and/or Elite enhancer-gene association Download GeneHancer data dump

Enhancers around NECAB2 on UCSC Golden Path with GeneCards custom track

Genomic Location for NECAB2 Gene

Chromosome:
16
Start:
83,965,185 bp from pter
End:
84,002,776 bp from pter
Size:
37,592 bases
Orientation:
Plus strand

Genomic View for NECAB2 Gene

Genes around NECAB2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NECAB2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NECAB2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NECAB2 Gene

Proteins for NECAB2 Gene

  • Protein details for NECAB2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q7Z6G3-NECA2_HUMAN
    Recommended name:
    N-terminal EF-hand calcium-binding protein 2
    Protein Accession:
    Q7Z6G3
    Secondary Accessions:
    • A2RRG3
    • H3BTW2
    • O75547
    • Q6ZSK0

    Protein attributes for NECAB2 Gene

    Size:
    386 amino acids
    Molecular mass:
    43194 Da
    Quaternary structure:
    • Interacts (calcium-dependent) with ADORA2A and GRM5.
    SequenceCaution:
    • Sequence=AAI31616.1; Type=Erroneous initiation; Evidence={ECO:0000305}; Sequence=BAC86948.1; Type=Erroneous initiation; Evidence={ECO:0000305};

    Alternative splice isoforms for NECAB2 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NECAB2 Gene

Post-translational modifications for NECAB2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NECAB2 Gene

No data available for DME Specific Peptides for NECAB2 Gene

Domains & Families for NECAB2 Gene

Gene Families for NECAB2 Gene

Suggested Antigen Peptide Sequences for NECAB2 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NECAB2: view

No data available for UniProtKB/Swiss-Prot for NECAB2 Gene

Function for NECAB2 Gene

Molecular function for NECAB2 Gene

UniProtKB/Swiss-Prot Function:
May act as a signaling scaffold protein that senses intracellular calcium. Can modulate ligand-induced internalization of ADORA2A and coupling efficiency of mGluR5/GRM5; for both receptors may regulate signaling activity such as promoting MAPK1/3 (ERK1/2) activation.

Phenotypes From GWAS Catalog for NECAB2 Gene

Gene Ontology (GO) - Molecular Function for NECAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005509 calcium ion binding IEA --
GO:0005515 protein binding IPI 17689978
GO:0031687 A2A adenosine receptor binding IDA 17689978
GO:0031802 type 5 metabotropic glutamate receptor binding IDA 19694902
GO:0046872 metal ion binding IEA --
genes like me logo Genes that share ontologies with NECAB2: view
genes like me logo Genes that share phenotypes with NECAB2: view

Animal Models for NECAB2 Gene

MGI Knock Outs for NECAB2:

Animal Model Products

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for NECAB2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for NECAB2 Gene

Localization for NECAB2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NECAB2 Gene

Cytoplasm. Cell projection, dendrite. Cell projection, axon. Cell membrane. Note=Colocalizes with ADORA2A and/or mGluR5/GRM5 at the plasma membrane (PubMed:17689978, PubMed:19694902). Found in neuronal somata (PubMed:26843217). Detected in the cytoplasm of striatal neurons, at postsynaptic sites, filling dendritic shafts and spines, and at presynaptic sites, filling axon terminals (By similarity). {ECO:0000250 UniProtKB:F1LQY6, ECO:0000269 PubMed:17689978, ECO:0000269 PubMed:19694902, ECO:0000269 PubMed:26843217}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NECAB2 gene
Compartment Confidence
plasma membrane 5
mitochondrion 2
nucleus 2
cytosol 2
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for NECAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IEA --
GO:0005886 plasma membrane IDA,IEA 19694902
GO:0016020 membrane IEA --
GO:0030424 axon IEA --
GO:0030425 dendrite IEA --
genes like me logo Genes that share ontologies with NECAB2: view

Pathways & Interactions for NECAB2 Gene

SuperPathways for NECAB2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NECAB2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0060168 positive regulation of adenosine receptor signaling pathway IDA 17689978
GO:0070374 positive regulation of ERK1 and ERK2 cascade IDA 19694902
GO:1900451 positive regulation of glutamate receptor signaling pathway IDA 19694902
GO:1904021 negative regulation of G-protein coupled receptor internalization IDA 17689978
GO:1905477 positive regulation of protein localization to membrane IDA 19694902
genes like me logo Genes that share ontologies with NECAB2: view

No data available for Pathways by source and SIGNOR curated interactions for NECAB2 Gene

Drugs & Compounds for NECAB2 Gene

No Compound Related Data Available

Transcripts for NECAB2 Gene

Unigene Clusters for NECAB2 Gene

N-terminal EF-hand calcium binding protein 2:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

Clone Products

  • Applied Biological Materials Clones for NECAB2
  • Vectors and viruses for ORF, Lenti, Retro, Adenovirus, AAV, and more

Alternative Splicing Database (ASD) splice patterns (SP) for NECAB2 Gene

No ASD Table

Relevant External Links for NECAB2 Gene

GeneLoc Exon Structure for
NECAB2
ECgene alternative splicing isoforms for
NECAB2

Expression for NECAB2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NECAB2 Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NECAB2 Gene

This gene is overexpressed in Brain - Nucleus accumbens (basal ganglia) (x7.9), Brain - Amygdala (x7.0), Brain - Caudate (basal ganglia) (x6.5), Brain - Putamen (basal ganglia) (x5.7), Brain - Anterior cingulate cortex (BA24) (x4.9), and Brain - Hypothalamus (x4.1).

Protein differential expression in normal tissues from HIPED for NECAB2 Gene

This gene is overexpressed in Fetal Brain (24.4), Brain (21.2), and Frontal cortex (7.3).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, and MOPED for NECAB2 Gene



NURSA nuclear receptor signaling pathways regulating expression of NECAB2 Gene:

NECAB2

SOURCE GeneReport for Unigene cluster for NECAB2 Gene:

Hs.140950

mRNA Expression by UniProt/SwissProt for NECAB2 Gene:

Q7Z6G3-NECA2_HUMAN
Tissue specificity: Expressed in brain. Expressed in the spinal dorsal horn with especially strong expression in lamina IIi; found in excitory synaptic boutons and in ependymal cells (at protein level).

Evidence on tissue expression from TISSUES for NECAB2 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with NECAB2: view

Primer Products

No data available for Protein tissue co-expression partners and Phenotype-based relationships between genes and organs from Gene ORGANizer for NECAB2 Gene

Orthologs for NECAB2 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NECAB2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NECAB2 33 34
  • 98.53 (n)
cow
(Bos Taurus)
Mammalia NECAB2 33 34
  • 85.77 (n)
dog
(Canis familiaris)
Mammalia NECAB2 33
  • 84.23 (n)
mouse
(Mus musculus)
Mammalia Necab2 33 16 34
  • 83.68 (n)
rat
(Rattus norvegicus)
Mammalia Necab2 33
  • 81.85 (n)
oppossum
(Monodelphis domestica)
Mammalia NECAB2 34
  • 66 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NECAB2 34
  • 60 (a)
OneToOne
chicken
(Gallus gallus)
Aves NECAB2 33 34
  • 71.87 (n)
lizard
(Anolis carolinensis)
Reptilia NECAB2 34
  • 85 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia LOC101731915 33
  • 70.85 (n)
zebrafish
(Danio rerio)
Actinopterygii necab2 33 34
  • 67.86 (n)
Species where no ortholog for NECAB2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NECAB2 Gene

ENSEMBL:
Gene Tree for NECAB2 (if available)
TreeFam:
Gene Tree for NECAB2 (if available)

Paralogs for NECAB2 Gene

Paralogs for NECAB2 Gene

(2) SIMAP similar genes for NECAB2 Gene using alignment to 5 proteins:

genes like me logo Genes that share paralogs with NECAB2: view

Variants for NECAB2 Gene

Sequence variations from dbSNP and Humsavar for NECAB2 Gene

SNP ID Clin Chr 16 pos Sequence Context AA Info Type
rs1000036962 -- 83,989,596(+) GAGAG(C/G)AGGGC intron-variant
rs1000050619 -- 83,993,513(+) TGTTT(A/C)TGTAT intron-variant
rs1000142109 -- 83,985,450(+) CAACA(A/T)GGTGA intron-variant
rs1000159572 -- 83,968,860(+) TACGC(C/G)CCGGC intron-variant
rs1000164617 -- 83,975,568(+) GGGCT(A/G)CCCTG intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NECAB2 Gene

Variant ID Type Subtype PubMed ID
dgv3056n100 CNV loss 25217958
dgv357n27 CNV loss 19166990
dgv5259n54 CNV loss 21841781
dgv5260n54 CNV loss 21841781
esv28321 CNV loss 19812545
esv3572242 CNV gain 25503493
esv3639405 CNV loss 21293372
nsv1065790 CNV loss 25217958
nsv1067050 CNV loss 25217958
nsv1070361 CNV deletion 25765185
nsv1126437 CNV deletion 24896259
nsv1136220 CNV deletion 24896259
nsv457591 CNV loss 19166990
nsv457594 CNV loss 19166990
nsv471106 CNV gain 18288195
nsv517566 CNV gain+loss 19592680
nsv528396 CNV loss 19592680
nsv573409 CNV loss 21841781
nsv573413 CNV loss 21841781
nsv573415 CNV loss 21841781
nsv573417 CNV loss 21841781
nsv573418 CNV loss 21841781
nsv827780 CNV loss 20364138

Variation tolerance for NECAB2 Gene

Residual Variation Intolerance Score: 31.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 10.05; 90.12% of all genes are more intolerant (likely to be disease-causing)

Relevant External Links for NECAB2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NECAB2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NECAB2 Gene

Disorders for NECAB2 Gene

Relevant External Links for NECAB2

Genetic Association Database (GAD)
NECAB2
Human Genome Epidemiology (HuGE) Navigator
NECAB2
Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NECAB2

No disorders were found for NECAB2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NECAB2 Gene

Publications for NECAB2 Gene

  1. NECABs: a family of neuronal Ca(2+)-binding proteins with an unusual domain structure and a restricted expression pattern. (PMID: 12044471) Sugita S … Südhof TC (Neuroscience 2002) 2 3 4 60
  2. Comparative anatomical distribution of neuronal calcium-binding protein (NECAB) 1 and -2 in rodent and human spinal cord. (PMID: 26843217) Zhang MD … Hökfelt T (Brain structure & function 2016) 3 4 60
  3. Personalized smoking cessation: interactions between nicotine dose, dependence and quit-success genotype score. (PMID: 20379614) Rose JE … Uhl GR (Molecular medicine (Cambridge, Mass.) 2010) 3 45 60
  4. The association of metabotropic glutamate receptor type 5 with the neuronal Ca2+-binding protein 2 modulates receptor function. (PMID: 19694902) Canela L … Ciruela F (Journal of neurochemistry 2009) 3 4 60
  5. Molecular genetics of successful smoking cessation: convergent genome-wide association study results. (PMID: 18519826) Uhl GR … Lerman C (Archives of general psychiatry 2008) 3 45 60

Products for NECAB2 Gene

Sources for NECAB2 Gene

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