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Aliases for NECAB1 Gene

Aliases for NECAB1 Gene

  • N-Terminal EF-Hand Calcium Binding Protein 1 2 3 5
  • Neuronal Calcium-Binding Protein 1 3 4
  • EF-Hand Calcium Binding Protein 1 2 3
  • EF-Hand Calcium-Binding Protein 1 3 4
  • EFCBP1 3 4
  • Synaptotagmin Interacting Protein 1 3
  • EF Hand Calcium Binding Protein 1 3
  • Neuronal Calcium Binding Protein 3
  • STIP-1 3

External Ids for NECAB1 Gene

Previous HGNC Symbols for NECAB1 Gene

  • EFCBP1

Previous GeneCards Identifiers for NECAB1 Gene

  • GC08P091873
  • GC08P087013

Summaries for NECAB1 Gene

GeneCards Summary for NECAB1 Gene

NECAB1 (N-Terminal EF-Hand Calcium Binding Protein 1) is a Protein Coding gene. GO annotations related to this gene include calcium ion binding. An important paralog of this gene is NECAB3.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NECAB1 Gene

Genomics for NECAB1 Gene

Regulatory Elements for NECAB1 Gene

Enhancers for NECAB1 Gene
GeneHancer Identifier Score Enhancer Sources TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Other Gene Targets for Enhancer

Enhancers around NECAB1 on UCSC Golden Path with GeneCards custom track

Promoters for NECAB1 Gene
Ensembl Regulatory Elements (ENSRs) TSS Distance (bp) Size (bp) Binding Sites for Transcription Factors within promoters

ENSRs around NECAB1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NECAB1 Gene

Chromosome:
8
Start:
90,791,550 bp from pter
End:
90,959,408 bp from pter
Size:
167,859 bases
Orientation:
Plus strand

Genomic View for NECAB1 Gene

Genes around NECAB1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NECAB1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NECAB1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NECAB1 Gene

Proteins for NECAB1 Gene

  • Protein details for NECAB1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8N987-NECA1_HUMAN
    Recommended name:
    N-terminal EF-hand calcium-binding protein 1
    Protein Accession:
    Q8N987
    Secondary Accessions:
    • Q6NUS7
    • Q96AZ7
    • Q9HBW8

    Protein attributes for NECAB1 Gene

    Size:
    351 amino acids
    Molecular mass:
    40571 Da
    Quaternary structure:
    • Interacts with STX1 (PubMed:12044471). May interact with CPNE6 (PubMed:12044471).

    Alternative splice isoforms for NECAB1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NECAB1 Gene

Proteomics data for NECAB1 Gene at MOPED

Post-translational modifications for NECAB1 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NECAB1 Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NECAB1 Gene

Domains & Families for NECAB1 Gene

Suggested Antigen Peptide Sequences for NECAB1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8N987

UniProtKB/Swiss-Prot:

NECA1_HUMAN :
  • Contains 1 ABM domain.
Domain:
  • Contains 1 ABM domain.
  • Contains 2 EF-hand domains.
genes like me logo Genes that share domains with NECAB1: view

Function for NECAB1 Gene

Phenotypes for NECAB1 Gene

genes like me logo Genes that share phenotypes with NECAB1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NECAB1 Gene

Localization for NECAB1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NECAB1 Gene

Cytoplasm.

Subcellular locations from

COMPARTMENTS
Jensen Localization Image for NECAB1 Gene COMPARTMENTS Subcellular localization image for NECAB1 gene
Compartment Confidence
nucleus 5
cytosol 3
extracellular 1

Gene Ontology (GO) - Cellular Components for NECAB1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IDA --
genes like me logo Genes that share ontologies with NECAB1: view

Pathways & Interactions for NECAB1 Gene

SuperPathways for NECAB1 Gene

No Data Available

Interacting Proteins for NECAB1 Gene

Gene Ontology (GO) - Biological Process for NECAB1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NECAB1 Gene

Drugs & Compounds for NECAB1 Gene

(1) Drugs for NECAB1 Gene - From: Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
genes like me logo Genes that share compounds with NECAB1: view

Transcripts for NECAB1 Gene

Unigene Clusters for NECAB1 Gene

N-terminal EF-hand calcium binding protein 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NECAB1 Gene

No ASD Table

Relevant External Links for NECAB1 Gene

GeneLoc Exon Structure for
NECAB1
ECgene alternative splicing isoforms for
NECAB1

Expression for NECAB1 Gene

mRNA expression in normal human tissues for NECAB1 Gene

mRNA differential expression in normal tissues according to GTEx for NECAB1 Gene

This gene is overexpressed in Brain - Frontal Cortex (BA9) (x8.3), Brain - Anterior cingulate cortex (BA24) (x6.5), Brain - Spinal cord (cervical c-1) (x6.1), Brain - Cortex (x5.2), and Brain - Hippocampus (x4.0).

Protein differential expression in normal tissues from HIPED for NECAB1 Gene

This gene is overexpressed in Brain (33.6) and Frontal cortex (27.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NECAB1 Gene



SOURCE GeneReport for Unigene cluster for NECAB1 Gene Hs.719466

mRNA Expression by UniProt/SwissProt for NECAB1 Gene

Q8N987-NECA1_HUMAN
Tissue specificity: Expressed in brain (at protein level).
genes like me logo Genes that share expression patterns with NECAB1: view

Protein tissue co-expression partners for NECAB1 Gene

- Elite partner

Primer Products

Orthologs for NECAB1 Gene

This gene was present in the common ancestor of chordates.

Orthologs for NECAB1 Gene

Organism Taxonomy Gene Similarity Type Details
dog
(Canis familiaris)
Mammalia NECAB1 35
  • 91.3 (n)
  • 94.72 (a)
NECAB1 36
  • 95 (a)
OneToOne
mouse
(Mus musculus)
Mammalia Necab1 35
  • 91.07 (n)
  • 96.58 (a)
Necab1 16
Necab1 36
  • 96 (a)
OneToOne
chimpanzee
(Pan troglodytes)
Mammalia NECAB1 35
  • 99.26 (n)
  • 99.68 (a)
NECAB1 36
  • 100 (a)
OneToOne
rat
(Rattus norvegicus)
Mammalia Necab1 35
  • 91.26 (n)
  • 96.3 (a)
oppossum
(Monodelphis domestica)
Mammalia NECAB1 36
  • 92 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NECAB1 36
  • 57 (a)
OneToOne
chicken
(Gallus gallus)
Aves NECAB1 35
  • 78.56 (n)
  • 83.84 (a)
NECAB1 36
  • 83 (a)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NECAB1 36
  • 75 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia necab1 35
  • 76.93 (n)
  • 82.01 (a)
zebrafish
(Danio rerio)
Actinopterygii necab1 35
  • 70 (n)
  • 76.97 (a)
necab1 36
  • 72 (a)
OneToOne
Species with no ortholog for NECAB1:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NECAB1 Gene

ENSEMBL:
Gene Tree for NECAB1 (if available)
TreeFam:
Gene Tree for NECAB1 (if available)

Paralogs for NECAB1 Gene

Paralogs for NECAB1 Gene

(3) SIMAP similar genes for NECAB1 Gene using alignment to 1 proteins:

genes like me logo Genes that share paralogs with NECAB1: view

Variants for NECAB1 Gene

Sequence variations from dbSNP and Humsavar for NECAB1 Gene

SNP ID Clin Chr 08 pos Sequence Context AA Info Type
rs2062880 -- 90,839,435(-) TATAT(C/T)CCTAG intron-variant
rs2062881 -- 90,829,481(-) TCTGG(A/T)ACTCC intron-variant
rs2062882 -- 90,827,348(-) TACCA(C/T)AAACA intron-variant
rs2202392 -- 90,831,276(-) GATTT(G/T)TCCAG intron-variant
rs2221423 -- 90,818,392(+) tttgg(A/T)tcttt intron-variant

Structural Variations from Database of Genomic Variants (DGV) for NECAB1 Gene

Variant ID Type Subtype PubMed ID
nsv891185 CNV Loss 21882294
esv272269 CNV Insertion 20981092
esv269945 CNV Insertion 20981092

Variation tolerance for NECAB1 Gene

Residual Variation Intolerance Score: 40.8% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 0.73; 15.40% of all genes are more intolerant (likely to be disease-causing)

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Relevant External Links for NECAB1 Gene

Disorders for NECAB1 Gene

Relevant External Links for NECAB1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NECAB1

No disorders were found for NECAB1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NECAB1 Gene

Publications for NECAB1 Gene

  1. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard D.S. … Malek J. (Genome Res. 2004) 3 4 67
  2. Interactions of pathological hallmark proteins: tubulin polymerization promoting protein/p25, beta-amyloid, and alpha-synuclein. (PMID: 21832049) OlA!h J. … OvA!di J. (J. Biol. Chem. 2011) 3
  3. Toward a confocal subcellular atlas of the human proteome. (PMID: 18029348) Barbe L. … Andersson-Svahn H. (Mol. Cell Proteomics 2008) 3
  4. Subfield and layer-specific depletion in calbindin-D28K, calretinin and parvalbumin immunoreactivity in the dentate gyrus of amyloid precursor protein/presenilin 1 transgenic mice. (PMID: 18583063) PopoviA8 M. … Van Groen T. (Neuroscience 2008) 23
  5. EFCBP1/NECAB1, a brain-specifically expressed gene with highest abundance in temporal lobe, encodes a protein containing EF-hand and antibiotic biosynthesis monooxygenase domains. (PMID: 17364817) Wu H. … Yu L. (DNA Seq. 2007) 3

Products for NECAB1 Gene

Sources for NECAB1 Gene

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