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Aliases for NEBL-AS1 Gene

Subcategory (RNA class) for NEBL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NEBL-AS1 Gene

  • NEBL Antisense RNA 1 2 3 5

External Ids for NEBL-AS1 Gene

Previous GeneCards Identifiers for NEBL-AS1 Gene

  • GC10P021464

Summaries for NEBL-AS1 Gene

GeneCards Summary for NEBL-AS1 Gene

NEBL-AS1 (NEBL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NEBL-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEBL-AS1 Gene

Genomics for NEBL-AS1 Gene

GeneHancer (GH) Regulatory Elements for NEBL-AS1 Gene

Promoters and enhancers for NEBL-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10I021172 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE 550.8 +0.4 411 3.5 HDGF PKNOX1 FOXA2 SIN3A GLI4 ZNF2 ZBTB7B YY1 GLIS2 KLF7 NEBL NEBL-AS1 ENSG00000228860
GH10I021173 Enhancer 0.4 ENCODE 550.8 -1.7 -1683 0.2 MNT FOXA1 EZH2 NEBL NEBL-AS1 C10orf113
GH10I021167 Enhancer 0.8 ENCODE 0.4 -6.9 -6914 0.4 HDAC1 HDGF ATF1 FOXA2 ARNT FEZF1 ZNF335 SMARCA5 ZBTB11 IKZF1 C10orf113 RNU6-15P NEBL NEBL-AS1
GH10I021166 Enhancer 0.7 ENCODE 0.4 -7.2 -7169 0 HDAC1 BCOR HDGF ATF1 ARNT ASH1L BACH1 ZMYM3 FOSL1 FOXK2 C10orf113 RNU6-15P NEBL NEBL-AS1
GH10I021160 Enhancer 0.5 ENCODE 0.4 -12.1 -12145 1.7 SP1 ZNF121 USF1 MAX SIN3A NEBL NEBL-AS1 C10orf113
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NEBL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NEBL-AS1 Gene

Genomic Locations for NEBL-AS1 Gene
chr10:21,173,990-21,175,048
(GRCh38/hg38)
Size:
1,059 bases
Orientation:
Plus strand
chr10:21,462,943-21,463,977
(GRCh37/hg19)

Genomic View for NEBL-AS1 Gene

Genes around NEBL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEBL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEBL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEBL-AS1 Gene

Proteins for NEBL-AS1 Gene

Post-translational modifications for NEBL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEBL-AS1 Gene

Domains & Families for NEBL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEBL-AS1 Gene

Function for NEBL-AS1 Gene

Phenotypes From GWAS Catalog for NEBL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEBL-AS1 Gene

Localization for NEBL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NEBL-AS1 Gene

Pathways & Interactions for NEBL-AS1 Gene

SuperPathways for NEBL-AS1 Gene

No Data Available

Interacting Proteins for NEBL-AS1 Gene

Gene Ontology (GO) - Biological Process for NEBL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NEBL-AS1 Gene

Drugs & Compounds for NEBL-AS1 Gene

No Compound Related Data Available

Transcripts for NEBL-AS1 Gene

mRNA/cDNA for NEBL-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEBL-AS1 Gene

NEBL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEBL-AS1 Gene

No ASD Table

Relevant External Links for NEBL-AS1 Gene

GeneLoc Exon Structure for
NEBL-AS1
ECgene alternative splicing isoforms for
NEBL-AS1

Expression for NEBL-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NEBL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NEBL-AS1 Gene

This gene is overexpressed in Pituitary (x4.4).

SOURCE GeneReport for Unigene cluster for NEBL-AS1 Gene:

Hs.635827
genes like me logo Genes that share expression patterns with NEBL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NEBL-AS1 Gene

Orthologs for NEBL-AS1 Gene

Evolution for NEBL-AS1 Gene

ENSEMBL:
Gene Tree for NEBL-AS1 (if available)
TreeFam:
Gene Tree for NEBL-AS1 (if available)

No data available for Orthologs for NEBL-AS1 Gene

Paralogs for NEBL-AS1 Gene

No data available for Paralogs for NEBL-AS1 Gene

Variants for NEBL-AS1 Gene

Sequence variations from dbSNP and Humsavar for NEBL-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs377648518 likely-benign, not specified 21,173,750(+) C/A upstream_transcript_variant
rs727503340 uncertain-significance, not specified 21,172,422(+) T/C upstream_transcript_variant
rs727503341 uncertain-significance, not specified 21,173,769(+) T/A upstream_transcript_variant
rs141707642 benign, not specified 21,173,840(+) G/A/C/T upstream_transcript_variant
rs11413698 not-provided, not specified 21,172,482(+) AAAAAAAAAAAAAA/AAAAAAAAAAA/AAAAAAAAAAAA/AAAAAAAAAAAAA/AAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAA/AAAAAAAAAAAAAAAAA upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NEBL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv508573 CNV deletion 20534489
nsv831806 CNV gain 17160897

Additional Variant Information for NEBL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NEBL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEBL-AS1 Gene

Disorders for NEBL-AS1 Gene

Additional Disease Information for NEBL-AS1

No disorders were found for NEBL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEBL-AS1 Gene

Publications for NEBL-AS1 Gene

  1. Fine expression profiling of full-length transcripts using a size-unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M … Kato S (DNA research : an international journal for rapid publication of reports on genes and genomes 2008) 3 58

Products for NEBL-AS1 Gene

Sources for NEBL-AS1 Gene

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