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Aliases for NEBL-AS1 Gene

Subcategory (RNA class) for NEBL-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NEBL-AS1 Gene

  • NEBL Antisense RNA 1 2 3 5

External Ids for NEBL-AS1 Gene

Previous GeneCards Identifiers for NEBL-AS1 Gene

  • GC10P021464

Summaries for NEBL-AS1 Gene

GeneCards Summary for NEBL-AS1 Gene

NEBL-AS1 (NEBL Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

No data available for Entrez Gene Summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NEBL-AS1 Gene

Genomics for NEBL-AS1 Gene

Regulatory Elements for NEBL-AS1 Gene

Enhancers for NEBL-AS1 Gene
GeneHancer Identifier Enhancer Score Enhancer Sources Gene-Enhancer Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor Binding Sites within enhancer Gene Targets for Enhancer
GH10F021173 0.9 ENCODE 0.8 -1.7 -1684 0.2 MNT NEBL-AS1 C10orf113
GH10F021166 0.2 ENCODE 0.4 -7.2 -7169 0.0 BCOR HDGF ATF1 CBX3 ESRRA ZMYM3 ZNF175 BACH1 UBTF ADNP C10orf113 RNU6-15P NEBL-AS1
GH10F021167 0.4 ENCODE 0.4 -6.9 -6915 0.4 BCOR HDGF ATF1 CBX3 ESRRA ZNF175 BACH1 UBTF FEZF1 ZIC2 AMD1P1 C10orf113 DNAJC1 RNU6-15P NEBL-AS1
GH10F021160 0.2 ENCODE 0.4 -12.1 -12146 1.7 ZNF121 CBX3 JUND TEAD4 MAX NEBL-AS1 C10orf113
GH10F021147 0.5 FANTOM5 0.3 -26.7 -26718 0.3 ZNF121 NEBL C10orf113 NEBL-AS1
- Elite enhancer/Elite enhancer-gene association Download Table
Download GeneHancer data dump

Enhancers around NEBL-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Location for NEBL-AS1 Gene

Chromosome:
10
Start:
21,173,990 bp from pter
End:
21,175,048 bp from pter
Size:
1,059 bases
Orientation:
Plus strand

Genomic View for NEBL-AS1 Gene

Genes around NEBL-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NEBL-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NEBL-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NEBL-AS1 Gene

Proteins for NEBL-AS1 Gene

Post-translational modifications for NEBL-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NEBL-AS1 Gene

Domains & Families for NEBL-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NEBL-AS1 Gene

Function for NEBL-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NEBL-AS1 Gene

Localization for NEBL-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Gene Ontology (GO) - Cellular Components for NEBL-AS1 Gene

Pathways & Interactions for NEBL-AS1 Gene

SuperPathways for NEBL-AS1 Gene

No Data Available

Interacting Proteins for NEBL-AS1 Gene

Gene Ontology (GO) - Biological Process for NEBL-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NEBL-AS1 Gene

Transcripts for NEBL-AS1 Gene

mRNA/cDNA for NEBL-AS1 Gene

(2) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NEBL-AS1 Gene

NEBL antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NEBL-AS1 Gene

No ASD Table

Relevant External Links for NEBL-AS1 Gene

GeneLoc Exon Structure for
NEBL-AS1
ECgene alternative splicing isoforms for
NEBL-AS1

Expression for NEBL-AS1 Gene

mRNA expression in normal human tissues for NEBL-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NEBL-AS1 Gene

This gene is overexpressed in Pituitary (x4.4).

SOURCE GeneReport for Unigene cluster for NEBL-AS1 Gene:

Hs.635827
genes like me logo Genes that share expression patterns with NEBL-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners and mRNA Expression by UniProt/SwissProt for NEBL-AS1 Gene

Orthologs for NEBL-AS1 Gene

Evolution for NEBL-AS1 Gene

ENSEMBL:
Gene Tree for NEBL-AS1 (if available)
TreeFam:
Gene Tree for NEBL-AS1 (if available)

No data available for Orthologs for NEBL-AS1 Gene

Paralogs for NEBL-AS1 Gene

No data available for Paralogs for NEBL-AS1 Gene

Variants for NEBL-AS1 Gene

Sequence variations from dbSNP and Humsavar for NEBL-AS1 Gene

SNP ID Clin Chr 10 pos Sequence Context AA Info Type
rs377648518 Likely benign 21,173,750(+) CCCGG(A/C)GCCCC intron-variant, upstream-variant-2KB
rs727503340 Uncertain significance 21,172,422(-) CATGA(A/G)CAACT upstream-variant-2KB, reference, missense
rs727503341 Uncertain significance 21,173,769(-) CCTGG(A/T)TAAGG upstream-variant-2KB, reference, missense
rs141707642 Benign 21,173,840(+) ATCGC(A/G/T)GTTCC upstream-variant-2KB, utr-variant-5-prime
rs11413698 untested 21,172,481(+) AAAAA(-/A)AAAAA intron-variant, upstream-variant-2KB

Structural Variations from Database of Genomic Variants (DGV) for NEBL-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv508573 CNV deletion 20534489
nsv831806 CNV gain 17160897

Relevant External Links for NEBL-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NEBL-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NEBL-AS1 Gene

Disorders for NEBL-AS1 Gene

Relevant External Links for NEBL-AS1

Atlas of Genetics and Cytogenetics in Oncology and Haematology:
NEBL-AS1

No disorders were found for NEBL-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NEBL-AS1 Gene

Publications for NEBL-AS1 Gene

  1. Fine expression profiling of full-length transcripts using a size- unbiased cDNA library prepared with the vector-capping method. (PMID: 18487259) Oshikawa M. … Kato S. (DNA Res. 2008) 3 64

Products for NEBL-AS1 Gene

Sources for NEBL-AS1 Gene

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